Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0331G1467 Vigna mungo HOM05D002977 ORTHO05D003225 3.6e-225 784.6 414 100.0
Glyma.07G079500 Glycine max HOM05D002977 ORTHO05D003225 2.6e-154 549.3 422 77.0
Phvul.010G089700 Phaseolus vulgaris HOM05D002977 ORTHO05D003225 9.7e-154 547.4 336 86.9
Glyma.03G017800 Glycine max HOM05D002977 ORTHO05D003225 7.2e-149 531.2 432 73.8
Ca_23758_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 2.1e-103 380.2 438 56.2
Medtr8g032770 Medicago truncatula HOM05D002977 ORTHO05D003225 4.4e-98 362.5 441 54.2
Psat4g151680 Pisum sativum HOM05D002977 ORTHO05D003225 1.1e-96 357.8 436 53.4
Lj3g0026127 Lotus japonicus HOM05D002977 ORTHO05D003225 1.9e-96 357.1 449 54.6
Lalb_Chr10g0097561 Lupinus albus HOM05D002977 ORTHO05D003225 2.5e-85 320.1 443 49.4
arahy.Tifrunner.gnm1.ann1.YQQF81 Arachis hypogaea HOM05D002977 ORTHO05D003225 9.0e-75 285.0 456 44.5
arahy.Tifrunner.gnm1.ann1.XNH79U Arachis hypogaea HOM05D002977 ORTHO05D003225 4.9e-73 279.3 456 44.1
Thecc.01G369200 Theobroma cacao HOM05D002977 ORTHO05D003225 1.0e-49 201.8 467 36.8
COL.COLO4_06963 Corchorus olitorius HOM05D002977 ORTHO05D003225 2.2e-49 200.7 467 36.0
Cpa.g.c33531 Carica papaya HOM05D002977 ORTHO05D003225 1.9e-48 197.6 457 35.7
MD07G1125600 Malus domestica HOM05D002977 ORTHO05D003225 2.1e-47 194.1 477 35.8
Potri.002G152700 Populus trichocarpa HOM05D002977 ORTHO05D003225 2.1e-47 194.1 480 35.6
RcHm_v2.0_Chr1g0352121 Rosa chinensis HOM05D002977 ORTHO05D003225 3.6e-47 193.4 446 38.6
QL08p050716 Quercus lobata HOM05D002977 ORTHO05D003225 6.1e-47 192.6 443 35.4
Haze_15232 Corylus avellana HOM05D002977 ORTHO05D003225 1.1e-45 188.3 429 36.4
FAN10G0205 Fragaria x ananassa HOM05D002977 ORTHO05D003225 1.1e-45 188.3 443 37.7
MD01G1047600 Malus domestica HOM05D002977 ORTHO05D003225 4.4e-45 186.4 461 36.9
Atru.chr5.400 Acer truncatum HOM05D002977 ORTHO05D003225 5.7e-45 186.0 457 36.3
FAN06G3334 Fragaria x ananassa HOM05D002977 ORTHO05D003225 2.2e-44 184.1 438 37.4
Sabra02G0121100 Salix brachista HOM05D002977 ORTHO05D003225 3.7e-44 183.3 468 33.8
FvH4_7g12980 Fragaria vesca HOM05D002977 ORTHO05D003225 6.3e-44 182.6 442 36.9
FAN10G1938 Fragaria x ananassa HOM05D002977 ORTHO05D003225 6.3e-44 182.6 444 36.9
Prupe.2G153900 Prunus persica HOM05D002977 ORTHO05D003225 1.1e-43 181.8 481 36.8
Hma1.2p1_0132F.1_g060810 Hydrangea macrophylla HOM05D002977 ORTHO05D003225 2.0e-42 177.6 433 36.0
Potri.014G077400 Populus trichocarpa HOM05D002977 ORTHO05D003225 4.5e-42 176.4 478 36.0
Duzib138G0317 Durio zibethinus HOM05D002977 ORTHO05D003225 6.5e-41 172.6 507 33.7
FAN06G4128 Fragaria x ananassa HOM05D002977 ORTHO05D003225 6.5e-41 172.6 450 36.2
Thhalv10029270m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 2.5e-40 170.6 452 34.7
Sabra14G0054900 Salix brachista HOM05D002977 ORTHO05D003225 4.2e-40 169.9 476 35.5
AL6G52680 Arabidopsis lyrata HOM05D002977 ORTHO05D003225 1.2e-39 168.3 441 32.9
C03p39020 Brassica napus HOM05D002977 ORTHO05D003225 3.6e-39 166.8 425 33.9
BolC3t16174H Brassica oleracea HOM05D002977 ORTHO05D003225 3.6e-39 166.8 425 33.9
BcaC01g06858 Brassica carinata HOM05D002977 ORTHO05D003225 4.7e-39 166.4 425 33.6
BraA03t12372Z Brassica rapa HOM05D002977 ORTHO05D003225 6.1e-39 166.0 417 35.3
BcaB01g02155 Brassica carinata HOM05D002977 ORTHO05D003225 1.4e-38 164.9 426 32.9
Cfa004177 Carpinus fangiana HOM05D002977 ORTHO05D003225 1.4e-38 164.9 433 32.6
A03p32000 Brassica napus HOM05D002977 ORTHO05D003225 8.8e-38 162.2 420 34.8
Ciclev10020246m.g Citrus clementina HOM05D002977 ORTHO05D003225 2.0e-37 161.0 462 36.6
CSS0040991 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 3.7e-36 156.8 418 32.8
FAN01G0110 Fragaria x ananassa HOM05D002977 ORTHO05D003225 3.7e-36 156.8 462 34.8
CANSAT56G0238 Cannabis sativa HOM05D002977 ORTHO05D003225 1.1e-35 155.2 460 33.7
Dinv37695 Davidia involucrata HOM05D002977 ORTHO05D003225 1.1e-35 155.2 448 33.5
Dinv43754 Davidia involucrata HOM05D002977 ORTHO05D003225 2.4e-35 154.1 427 33.0
Peaxi162Scf00021g00041 Petunia axillaris HOM05D002977 ORTHO05D003225 2.4e-35 154.1 458 34.9
Carub.0006s3643 Capsella rubella HOM05D002977 ORTHO05D003225 3.1e-35 153.7 443 32.1
TWI81G0253 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 9.1e-35 152.1 481 32.4
THA.LOC104801463 Tarenaya hassleriana HOM05D002977 ORTHO05D003225 7.7e-34 149.1 463 32.8
AT4G00770 Arabidopsis thaliana HOM05D002977 ORTHO05D003225 2.9e-33 147.1 437 32.3
Gohir.A08G178500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 2.9e-33 147.1 469 33.3
Nn1g01342 Nelumbo nucifera HOM05D002977 ORTHO05D003225 2.9e-33 147.1 479 30.9
Sp6g00770 Schrenkiella parvula HOM05D002977 ORTHO05D003225 2.9e-33 147.1 446 32.1
Aqoxy7G00463 Aquilegia oxysepala HOM05D002977 ORTHO05D003225 3.8e-33 146.7 441 30.2
CARHR248960 Cardamine hirsuta HOM05D002977 ORTHO05D003225 8.5e-33 145.6 439 31.7
TWI59G0633 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 1.1e-32 145.2 450 35.8
Sopen01g037600 Solanum pennellii HOM05D002977 ORTHO05D003225 1.5e-32 144.8 423 32.9
Sabra03G0085100 Salix brachista HOM05D002977 ORTHO05D003225 4.2e-32 143.3 470 31.7
Gorai.004G156200 Gossypium raimondii HOM05D002977 ORTHO05D003225 5.5e-32 142.9 430 32.6
Thecc.03G270800 Theobroma cacao HOM05D002977 ORTHO05D003225 5.5e-32 142.9 488 32.0
Manes.05G040400 Manihot esculenta HOM05D002977 ORTHO05D003225 9.4e-32 142.1 437 34.6
Actinidia33447 Actinidia chinensis HOM05D002977 ORTHO05D003225 1.2e-31 141.7 416 31.7
GSVIVG01027598001 Vitis vinifera HOM05D002977 ORTHO05D003225 1.2e-31 141.7 414 32.6
Solyc01g091830.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 1.6e-31 141.4 425 33.9
PGSC0003DMG400017053 Solanum tuberosum HOM05D002977 ORTHO05D003225 1.6e-31 141.4 417 33.1
Nn6g34271 Nelumbo nucifera HOM05D002977 ORTHO05D003225 3.6e-31 140.2 490 29.0
Gorai.004G207700 Gossypium raimondii HOM05D002977 ORTHO05D003225 6.1e-31 139.4 469 32.2
Gohir.D08G150500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 2.3e-30 137.5 430 31.6
Gohir.D08G197000 Gossypium hirsutum HOM05D002977 ORTHO05D003225 3.0e-30 137.1 469 32.2
vmacro20976 Vaccinium macrocarpon HOM05D002977 ORTHO05D003225 6.8e-30 136.0 422 31.0
Peaxi162Scf00233g00015 Petunia axillaris HOM05D002977 ORTHO05D003225 8.8e-30 135.6 431 33.6
Gohir.A08G129200 Gossypium hirsutum HOM05D002977 ORTHO05D003225 4.4e-29 133.3 428 32.0
Duzib084G1184 Durio zibethinus HOM05D002977 ORTHO05D003225 7.5e-29 132.5 482 31.5
QL12p017099 Quercus lobata HOM05D002977 ORTHO05D003225 9.8e-29 132.1 513 28.7
Nitab4.5_0004550g0040 Nicotiana tabacum HOM05D002977 ORTHO05D003225 1.7e-28 131.3 460 33.0
Potri.003G121100 Populus trichocarpa HOM05D002977 ORTHO05D003225 1.7e-28 131.3 465 29.2
Duzib205G0359 Durio zibethinus HOM05D002977 ORTHO05D003225 3.7e-28 130.2 481 30.6
Manes.01G067700 Manihot esculenta HOM05D002977 ORTHO05D003225 3.7e-28 130.2 468 31.0
Oeu059228.1 Olea europaea HOM05D002977 ORTHO05D003225 3.1e-27 127.1 432 32.9
Oeu059227.1 Olea europaea HOM05D002977 ORTHO05D003225 4.1e-27 126.7 432 32.9
RcHm_v2.0_Chr7g0199421 Rosa chinensis HOM05D002977 ORTHO05D003225 9.1e-27 125.6 507 26.4
TWI60G0323 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 9.1e-27 125.6 481 31.8
MBI12_g11809_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 3.5e-26 123.6 455 29.5
Lsat_1_v5_gn_7_8261 Lactuca sativa HOM05D002977 ORTHO05D003225 4.5e-26 123.2 374 32.1
Cc08_g13950 Coffea canephora HOM05D002977 ORTHO05D003225 5.9e-26 122.9 471 30.1
CAN.G170.54 Capsicum annuum HOM05D002977 ORTHO05D003225 7.7e-26 122.5 452 31.4
DCAR_008585 Daucus carota HOM05D002977 ORTHO05D003225 1.0e-25 122.1 412 32.3
Eucgr.E00281 Eucalyptus grandis HOM05D002977 ORTHO05D003225 1.0e-25 122.1 436 31.2
Prupe.5G089800 Prunus persica HOM05D002977 ORTHO05D003225 1.3e-25 121.7 477 27.7
CiPaw.11G141500 Carya illinoinensis HOM05D002977 ORTHO05D003225 2.3e-25 120.9 496 29.8
Manes.02G027900 Manihot esculenta HOM05D002977 ORTHO05D003225 1.9e-24 117.9 472 26.3
Sabra01G0084500 Salix brachista HOM05D002977 ORTHO05D003225 2.5e-24 117.5 453 29.1
Haze_08955 Corylus avellana HOM05D002977 ORTHO05D003225 3.2e-24 117.1 473 29.2
TAR629G3293 Trochodendron aralioides HOM05D002977 ORTHO05D003225 4.2e-24 116.7 390 33.1
Atru.chr9.1537 Acer truncatum HOM05D002977 ORTHO05D003225 1.2e-23 115.2 469 27.3
Duzib133G0091 Durio zibethinus HOM05D002977 ORTHO05D003225 1.2e-23 115.2 206 42.7
Aa31LG5G240 Aethionema arabicum HOM05D002977 ORTHO05D003225 2.1e-23 114.4 486 28.4
MSTRG.20788 Avicennia marina HOM05D002977 ORTHO05D003225 2.1e-23 114.4 402 32.3
Potri.001G110900 Populus trichocarpa HOM05D002977 ORTHO05D003225 3.6e-23 113.6 480 27.7
Actinidia02049 Actinidia chinensis HOM05D002977 ORTHO05D003225 1.4e-22 111.7 478 28.7
Oeu024421.1 Olea europaea HOM05D002977 ORTHO05D003225 1.4e-22 111.7 408 31.9
FAN04G2551 Fragaria x ananassa HOM05D002524 ORTHO05D002718 2.3e-22 110.9 504 26.0
Nitab4.5_0000134g0230 Nicotiana tabacum HOM05D002977 ORTHO05D003225 3.0e-22 110.5 423 31.7
Oeu024422.1 Olea europaea HOM05D002977 ORTHO05D003225 4.0e-22 110.2 408 30.9
FvH4_5g01430 Fragaria vesca HOM05D002977 ORTHO05D003225 6.8e-22 109.4 505 26.5
Cc02_g37200 Coffea canephora HOM05D002977 ORTHO05D003225 8.8e-22 109.0 422 30.3
PGR042G2435 Punica granatum HOM05D002977 ORTHO05D003225 2.0e-21 107.8 436 28.7
SalBow3G1388 Salvia bowleyana HOM05D002977 ORTHO05D003225 2.0e-21 107.8 410 28.8
Cfa012096 Carpinus fangiana HOM05D002524 ORTHO05D002718 2.6e-21 107.5 476 29.2
FAN13G0210 Fragaria x ananassa HOM05D002524 ORTHO05D002718 9.8e-21 105.5 468 26.5
MSTRG.25572 Avicennia marina HOM05D002977 ORTHO05D003225 3.7e-20 103.6 469 26.9
ECA236G0338 Erigeron canadensis HOM05D002977 ORTHO05D003225 3.7e-20 103.6 404 30.9
FAN18G2499 Fragaria x ananassa HOM05D002524 ORTHO05D002718 3.7e-20 103.6 519 25.8
CiPaw.02G024700 Carya illinoinensis HOM05D002977 ORTHO05D003225 6.3e-20 102.8 209 35.4
HanXRQChr06g0168991 Helianthus annuus HOM05D002977 ORTHO05D003225 8.3e-20 102.4 417 28.8
DCAR_006904 Daucus carota HOM05D002977 ORTHO05D003225 1.1e-19 102.1 402 30.8
Migut.E01299 Erythranthe guttata HOM05D002977 ORTHO05D003225 3.1e-19 100.5 439 30.1
Manes.01G262800 Manihot esculenta HOM05D002977 ORTHO05D003225 4.1e-19 100.1 428 29.0
SGA_v2.0_scaffold286G47104 Striga asiatica HOM05D002977 ORTHO05D003225 1.6e-18 98.2 446 28.3
Nitab4.5_0003356g0060 Nicotiana tabacum HOM05D002977 ORTHO05D003225 5.9e-18 96.3 409 31.8
Sopen08g028630 Solanum pennellii HOM05D002977 ORTHO05D003225 1.1e-16 92.0 481 26.8
ClCG01G003130 Citrullus lanatus HOM05D002977 ORTHO05D003225 2.5e-16 90.9 454 25.8
Peaxi162Scf00714g00621 Petunia axillaris HOM05D002977 ORTHO05D003225 2.5e-16 90.9 476 26.1
FAN08G2595 Fragaria x ananassa HOM05D002524 ORTHO05D002718 1.2e-15 88.6 498 25.9
EL10Ac1g00967 Beta vulgaris HOM05D002977 ORTHO05D003225 1.6e-15 88.2 300 33.7
TWI14G0163 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 2.8e-15 87.4 443 27.8
AUR62010660 Chenopodium quinoa HOM05D002977 ORTHO05D003225 3.6e-15 87.0 455 25.9
Psat4g067560 Pisum sativum HOM05D002977 ORTHO05D003225 3.6e-15 87.0 429 27.0
Solyc08g080280.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 3.6e-15 87.0 482 27.0
COL.COLO4_05272 Corchorus olitorius HOM05D002977 ORTHO05D003225 4.7e-15 86.7 473 25.6
Hund16963 Selenicereus undatus HOM05D002977 ORTHO05D003225 8.0e-15 85.9 431 29.2
SGA_v2.0_scaffold196G40889 Striga asiatica HOM05D002977 ORTHO05D003225 2.3e-14 84.3 461 25.4
VMungo1215G3066 Vigna mungo HOM05D002977 ORTHO05D003225 2.3e-14 84.3 445 26.7
CsaV3_5G003260 Cucumis sativus L. HOM05D002977 ORTHO05D003225 4.0e-14 83.6 476 26.5
PSO478G2989 Papaver somniferum HOM05D002977 ORTHO05D003225 5.2e-14 83.2 544 23.9
Hund28360 Selenicereus undatus HOM05D002977 ORTHO05D003225 5.2e-14 83.2 468 26.5
Hund28364 Selenicereus undatus HOM05D002977 ORTHO05D003225 5.2e-14 83.2 468 26.5
TPR.G37675 Trifolium pratense HOM05D002977 ORTHO05D003225 1.5e-13 81.6 442 27.6
Ah.16g108930 Amaranthus hybridus HOM05D002977 ORTHO05D003225 2.0e-13 81.3 286 31.5
Gorai.008G243500 Gossypium raimondii HOM05D002977 ORTHO05D003225 2.6e-13 80.9 450 25.8
CAN.G981.38 Capsicum annuum HOM05D002977 ORTHO05D003225 5.7e-13 79.7 475 26.1
MELO3C005628.2 Cucumis melo HOM05D002977 ORTHO05D003225 9.8e-13 79.0 468 28.0
Ah.02g116430 Amaranthus hybridus HOM05D002977 ORTHO05D003225 1.7e-12 78.2 472 26.7
Migut.A00919 Erythranthe guttata HOM05D002977 ORTHO05D003225 1.7e-12 78.2 444 27.3
Gohir.A12G224700 Gossypium hirsutum HOM05D002977 ORTHO05D003225 2.2e-12 77.8 451 25.9
THA.LOC104806370 Tarenaya hassleriana HOM05D002977 ORTHO05D003225 2.2e-12 77.8 480 27.1
Gohir.D12G227500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 2.9e-12 77.4 450 25.6
Ciclev10023310m.g Citrus clementina HOM05D002977 ORTHO05D003225 3.7e-12 77.0 213 31.9
Lalb_Chr05g0225091 Lupinus albus HOM05D002977 ORTHO05D003225 3.7e-12 77.0 441 24.7
Medtr4g102650 Medicago truncatula HOM05D002977 ORTHO05D003225 6.4e-12 76.3 440 26.1
HanXRQChr07g0188421 Helianthus annuus HOM05D002977 ORTHO05D003225 1.1e-11 75.5 450 25.6
Phvul.003G212900 Phaseolus vulgaris HOM05D002977 ORTHO05D003225 1.1e-11 75.5 446 25.6
Glyma.17G132000 Glycine max HOM05D002977 ORTHO05D003225 1.8e-11 74.7 454 26.2
Sp7g21110 Schrenkiella parvula HOM05D002977 ORTHO05D003225 1.8e-11 74.7 465 24.7
Ah.12g057650 Amaranthus hybridus HOM05D002977 ORTHO05D003225 2.4e-11 74.3 442 26.9
SGA_v2.0_scaffold153G37063 Striga asiatica HOM05D002977 ORTHO05D003225 2.4e-11 74.3 412 26.7
Ca_20242_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 4.1e-11 73.6 424 24.8
Ca_29496_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 4.1e-11 73.6 424 24.8
CiPaw.12G098800 Carya illinoinensis HOM05D002977 ORTHO05D003225 5.4e-11 73.2 484 26.0
Lsat_1_v5_gn_6_13021 Lactuca sativa HOM05D002977 ORTHO05D003225 7.0e-11 72.8 472 25.0
ECA233G2885 Erigeron canadensis HOM05D002977 ORTHO05D003225 9.2e-11 72.4 461 24.3
Nitab4.5_0010430g0070 Nicotiana tabacum HOM05D002977 ORTHO05D003225 1.2e-10 72.0 202 35.6
Dinv39013 Davidia involucrata HOM05D002977 ORTHO05D003225 2.7e-10 70.9 459 24.0
Migut.B01683 Erythranthe guttata HOM05D002977 ORTHO05D003225 3.5e-10 70.5 440 24.1
CDE11G0380 Ceratophyllum demersum HOM05D055600 ORTHO05D003225 4.6e-10 70.1 201 30.3
MD04G1068300 Malus domestica HOM05D002977 ORTHO05D003225 4.6e-10 70.1 220 32.7
ATR0757G071 Amborella trichopoda HOM05D003485 ORTHO05D004004 1.7e-09 68.2 375 25.3
Glyma.05G050000 Glycine max HOM05D002977 ORTHO05D003225 1.7e-09 68.2 454 24.0
Lj4g0001816 Lotus japonicus HOM05D002977 ORTHO05D003225 2.3e-09 67.8 435 24.6
Glyma.01G215900 Glycine max HOM05D002977 ORTHO05D003225 3.0e-09 67.4 407 26.0
Thhalv10025169m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 6.6e-09 66.2 394 24.6
CARHR254530 Cardamine hirsuta HOM05D002977 ORTHO05D003225 1.5e-08 65.1 486 24.7
Ciclev10023936m.g Citrus clementina HOM05D002977 ORTHO05D003225 1.5e-08 65.1 229 33.2
A01p14320 Brassica napus HOM05D002977 ORTHO05D003225 2.5e-08 64.3 440 24.8
MELO3C006152.2 Cucumis melo HOM05D002977 ORTHO05D003225 2.5e-08 64.3 229 33.2
Cpa.g.sc74.83 Carica papaya HOM05D002977 ORTHO05D003225 4.3e-08 63.5 179 31.3
ClCG05G001920 Citrullus lanatus HOM05D002977 ORTHO05D003225 4.3e-08 63.5 417 26.4
CsaV3_3G009320 Cucumis sativus L. HOM05D002977 ORTHO05D003225 2.1e-07 61.2 422 25.4
Os04g0572500 Oryza sativa ssp. japonica HOM05D063545 ORTHO05D003225 2.8e-07 60.8 206 29.1
Lsat_1_v5_gn_3_5860 Lactuca sativa HOM05D002524 ORTHO05D002718 4.7e-07 60.1 456 24.8
Aa31LG9G10650 Aethionema arabicum HOM05D002977 ORTHO05D003225 1.1e-06 58.9 475 26.5
Sed0005409 Sechium edule HOM05D002977 ORTHO05D003225 1.4e-06 58.5 441 25.9
BraA01t01377Z Brassica rapa HOM05D002977 ORTHO05D003225 5.2e-06 56.6 456 22.1


User provided reference genes

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