Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 5.1e-160 567.8 303 100.0
Phvul.010G150500 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 1.3e-107 393.7 320 70.9
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 1.8e-101 373.2 302 71.2
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 7.2e-98 361.3 294 69.4
Lj3g0021763 Lotus japonicus HOM05D003500 ORTHO05D003919 3.5e-68 262.7 292 57.5
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 3.3e-66 256.1 311 54.7
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 5.8e-63 245.4 305 51.5
arahy.Tifrunner.gnm1.ann1.Y86J0E Arachis hypogaea HOM05D003500 ORTHO05D003919 8.4e-62 241.5 295 51.9
Psat7g252240 Pisum sativum HOM05D003500 ORTHO05D003919 1.2e-60 237.7 308 50.6
arahy.Tifrunner.gnm1.ann1.AD7SDK Arachis hypogaea HOM05D003500 ORTHO05D003919 9.6e-58 228.0 314 48.4
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 6.2e-57 225.3 306 50.3
Lalb_Chr01g0012691 Lupinus albus HOM05D003500 ORTHO05D003919 1.3e-41 174.5 209 50.7
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 1.3e-35 154.5 310 42.3
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 1.5e-34 151.0 307 39.7
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 4.3e-34 149.4 313 40.9
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 1.1e-32 144.8 321 38.0
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 4.0e-32 142.9 306 38.9
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 3.4e-31 139.8 305 37.4
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 3.4e-31 139.8 304 39.5
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 7.6e-31 138.7 311 38.3
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 7.6e-31 138.7 315 38.4
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 7.6e-31 138.7 315 39.0
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 2.9e-30 136.7 312 36.5
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 4.9e-30 136.0 305 36.1
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 1.4e-29 134.4 298 36.9
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 1.9e-29 134.0 304 36.5
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 2.5e-29 133.7 298 36.9
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 2.5e-29 133.7 304 36.5
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 9.3e-29 131.7 306 37.6
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 1.0e-27 128.3 306 37.3
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 1.3e-27 127.9 324 36.7
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 1.3e-27 127.9 345 35.7
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 3.0e-27 126.7 179 45.8
AT1G52343 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 8.7e-27 125.2 297 35.4
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 1.5e-26 124.4 319 34.5
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 5.7e-26 122.5 310 36.8
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 9.7e-26 121.7 322 35.7
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 1.3e-25 121.3 291 37.5
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 3.7e-25 119.8 304 34.5
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 6.3e-25 119.0 294 34.7
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 1.1e-24 118.2 141 53.9
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 1.8e-24 117.5 211 40.3
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 2.4e-24 117.1 300 34.0
AL1G60570 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 2.6e-23 113.6 287 34.1
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 3.4e-23 113.2 313 34.5
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 7.6e-23 112.1 313 33.5
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 1.3e-22 111.3 317 36.0
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 2.2e-22 110.5 312 35.6
BcaB02g11002 Brassica carinata HOM05D003500 ORTHO05D003919 6.5e-22 109.0 294 33.3
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 5.5e-21 105.9 314 31.8
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 7.2e-21 105.5 304 34.2
Gohir.D03G063800 Gossypium hirsutum HOM05D003500 ORTHO05D003919 9.4e-21 105.1 319 33.9
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 9.4e-21 105.1 206 38.8
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 1.2e-20 104.8 307 35.5
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 1.6e-20 104.4 327 33.9
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.6e-20 104.4 319 32.0
Peaxi162Scf00015g10038 Petunia axillaris HOM05D003500 ORTHO05D003919 1.6e-20 104.4 173 40.5
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 2.7e-20 103.6 249 34.9
Gorai.002G059400 Gossypium raimondii HOM05D003500 ORTHO05D003919 2.7e-20 103.6 319 33.9
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 4.6e-20 102.8 315 32.7
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 1.0e-19 101.7 308 30.5
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.0e-19 101.7 192 38.5
Nitab4.5_0000671g0100 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.4e-19 101.3 192 38.5
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 1.8e-19 100.9 320 31.9
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 3.0e-19 100.1 304 31.2
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 3.0e-19 100.1 302 33.4
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 3.9e-19 99.8 308 34.4
TPR.G24153 Trifolium pratense HOM05D003500 ORTHO05D003919 3.9e-19 99.8 161 45.3
SHI10927 Sapria himalayana HOM05D003500 ORTHO05D003919 8.8e-19 98.6 152 43.4
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 2.5e-18 97.1 315 30.2
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 3.3e-18 96.7 311 32.8
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 5.7e-18 95.9 308 28.9
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 7.4e-18 95.5 312 31.1
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 7.4e-18 95.5 309 29.4
Solyc03g120180.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 7.4e-18 95.5 126 46.8
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 1.7e-17 94.4 320 28.8
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 6.3e-17 92.4 314 31.5
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 1.1e-16 91.7 304 31.9
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 2.4e-16 90.5 314 30.3
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 3.1e-16 90.1 312 30.1
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.5e-15 87.8 311 30.5
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 1.5e-15 87.8 325 28.6
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 2.0e-15 87.4 302 29.8
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 2.0e-15 87.4 314 29.0
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 2.0e-15 87.4 304 31.2
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 2.0e-15 87.4 293 32.8
SGA_v2.0_scaffold37G14827 Striga asiatica HOM05D003500 ORTHO05D003919 2.6e-15 87.0 240 35.0
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 3.4e-15 86.7 330 28.5
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 4.5e-15 86.3 309 33.0
Actinidia32755 Actinidia chinensis HOM05D003500 ORTHO05D003919 7.7e-15 85.5 301 30.9
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 7.7e-15 85.5 320 30.0
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 7.7e-15 85.5 309 30.1
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 7.7e-15 85.5 313 29.1
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 1.0e-14 85.1 309 28.2
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 1.3e-14 84.7 307 29.3
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 1.3e-14 84.7 303 30.0
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.7e-14 84.3 310 31.6
MELO3C012963.2 Cucumis melo HOM05D003500 ORTHO05D003919 2.2e-14 84.0 298 33.6
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 2.2e-14 84.0 316 33.2
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 2.9e-14 83.6 313 28.4
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 8.5e-14 82.0 312 27.2
SalBow2G0526 Salvia bowleyana HOM05D003500 ORTHO05D003919 1.1e-13 81.6 309 31.1
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 1.4e-13 81.3 311 31.5
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 1.4e-13 81.3 314 28.3
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 7.2e-13 79.0 308 32.1
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 7.2e-13 79.0 304 31.6
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.2e-12 78.2 311 28.6
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.6e-12 77.8 307 29.0
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 1.6e-12 77.8 312 27.6
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 2.1e-12 77.4 303 29.7
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 2.1e-12 77.4 304 30.9
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 3.6e-12 76.6 307 28.3
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 3.6e-12 76.6 312 27.9
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 3.6e-12 76.6 312 27.9
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 3.6e-12 76.6 295 31.2
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 4.7e-12 76.3 309 26.2
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 6.1e-12 75.9 307 28.3
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 6.1e-12 75.9 308 27.6
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 6.1e-12 75.9 318 29.9
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 7.9e-12 75.5 326 30.1
CSS0016282 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 1.4e-11 74.7 207 35.7
CSS0048346 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 1.4e-11 74.7 207 35.7
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 1.4e-11 74.7 307 26.4
Sabra03G0031200 Salix brachista HOM05D003500 ORTHO05D003919 1.4e-11 74.7 108 44.4
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 1.8e-11 74.3 305 28.5
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 2.3e-11 73.9 304 31.2
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 5.1e-11 72.8 315 28.9
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 8.8e-11 72.0 194 35.6
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 8.8e-11 72.0 307 25.4
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 1.1e-10 71.6 305 30.5
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 1.1e-10 71.6 306 30.1
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 1.1e-10 71.6 306 30.1
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 1.1e-10 71.6 280 31.8
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 1.1e-10 71.6 302 29.8
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 1.5e-10 71.2 314 27.7
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 1.5e-10 71.2 307 27.4
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 2.6e-10 70.5 305 27.9
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 2.6e-10 70.5 302 29.5
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 2.6e-10 70.5 312 28.8
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 7.4e-10 68.9 310 28.1
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 9.7e-10 68.6 315 28.6
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 1.3e-09 68.2 310 28.1
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 1.7e-09 67.8 312 25.6
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 2.2e-09 67.4 305 25.9
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 2.2e-09 67.4 307 29.6
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 2.2e-09 67.4 359 26.5
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 3.7e-09 66.6 311 28.6
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 6.3e-09 65.9 348 27.9
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 8.2e-09 65.5 304 28.3
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 8.2e-09 65.5 313 28.1
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 2.4e-08 63.9 306 27.8
Os01g0863400 Oryza sativa ssp. japonica HOM05D003500 ORTHO05D003919 3.1e-08 63.5 302 25.8
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 4.1e-08 63.2 309 26.9
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 7.0e-08 62.4 308 26.9
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 9.1e-08 62.0 300 28.7
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 1.2e-07 61.6 307 27.7
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 1.5e-07 61.2 303 25.7
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 2.0e-07 60.8 306 27.1
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 2.6e-07 60.5 309 26.9
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 3.4e-07 60.1 309 27.8
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 4.5e-07 59.7 315 28.9
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 1.0e-06 58.5 315 29.2
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 1.0e-06 58.5 292 28.1
unitig_899.g14777 Utricularia gibba HOM05D003500 ORTHO05D003919 1.3e-06 58.2 121 37.2
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 2.9e-06 57.0 316 25.9
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 6.5e-06 55.8 299 24.4


User provided reference genes

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