Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 3.8e-132 474.9 255 100.0
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 3.3e-120 435.3 251 92.8
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 6.5e-116 421.0 255 89.8
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 3.1e-110 402.1 255 86.7
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 9.1e-102 374.0 256 81.6
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 9.1e-102 374.0 255 80.4
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 2.9e-100 369.0 256 80.1
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 5.0e-100 368.2 255 77.6
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.9e-99 366.3 255 75.7
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 3.2e-99 365.5 256 78.5
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 1.6e-98 363.2 256 78.9
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 8.8e-97 357.5 256 78.1
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 1.5e-96 356.7 252 76.2
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 2.0e-96 356.3 257 75.9
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 1.3e-95 353.6 255 75.7
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.8e-95 352.4 257 77.0
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 2.8e-95 352.4 257 75.1
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 3.1e-94 349.0 251 76.5
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 3.1e-94 349.0 254 75.6
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 3.1e-94 349.0 254 75.2
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 5.3e-94 348.2 257 74.3
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 5.3e-94 348.2 254 76.4
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 7.0e-94 347.8 254 74.8
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 9.1e-94 347.4 256 75.0
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.0e-93 346.3 251 76.5
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 3.5e-93 345.5 256 74.6
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 3.5e-93 345.5 256 75.0
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 4.5e-93 345.1 251 76.1
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 7.7e-93 344.4 255 71.4
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 7.7e-93 344.4 254 74.4
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 2.2e-92 342.8 255 72.2
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 5.0e-92 341.7 260 73.1
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 8.5e-92 340.9 248 75.8
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 1.5e-91 340.1 256 73.4
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 5.5e-91 338.2 267 71.5
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 9.4e-91 337.4 257 71.6
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 8.0e-90 334.3 256 70.7
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 1.0e-89 334.0 248 76.6
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 1.4e-89 333.6 254 73.6
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 1.8e-89 333.2 255 73.3
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 4.0e-89 332.0 251 72.9
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 5.2e-89 331.6 246 73.2
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 1.2e-88 330.5 256 73.0
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 1.5e-88 330.1 254 72.0
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 1.3e-87 327.0 251 69.7
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 1.3e-87 327.0 258 72.5
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 1.7e-87 326.6 252 69.8
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 2.8e-87 325.9 244 72.1
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 3.7e-87 325.5 259 68.3
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 3.7e-87 325.5 258 71.7
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 3.7e-87 325.5 255 71.4
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 3.1e-86 322.4 255 68.6
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 3.1e-86 322.4 255 67.8
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 1.2e-85 320.5 257 72.0
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 1.2e-85 320.5 251 67.3
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.6e-85 320.1 255 70.2
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 3.5e-85 318.9 251 66.5
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 5.9e-85 318.2 258 69.8
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 5.9e-85 318.2 251 68.9
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 7.7e-85 317.8 246 71.1
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 7.7e-85 317.8 348 55.7
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.3e-84 317.0 255 69.4
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 1.3e-84 317.0 251 66.9
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 2.2e-84 316.2 245 69.8
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 2.9e-84 315.8 246 69.5
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 2.9e-84 315.8 252 67.5
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 3.8e-84 315.5 274 66.1
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 6.5e-84 314.7 257 69.3
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 1.5e-83 313.5 251 70.5
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 5.5e-83 311.6 238 72.7
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 5.5e-83 311.6 242 68.2
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 5.5e-83 311.6 247 71.7
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 7.2e-83 311.2 246 68.3
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 7.2e-83 311.2 257 68.9
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 7.2e-83 311.2 246 68.7
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 9.4e-83 310.8 251 69.3
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 9.4e-83 310.8 251 70.5
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 1.0e-81 307.4 250 70.0
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 1.0e-81 307.4 248 65.3
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 4.0e-81 305.4 242 67.8
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 4.0e-81 305.4 250 70.0
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 8.8e-81 304.3 244 68.4
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 3.4e-80 302.4 248 64.5
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 1.7e-79 300.1 248 66.1
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 2.2e-79 299.7 257 68.5
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 2.8e-79 299.3 205 70.7
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 3.7e-79 298.9 204 72.5
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 1.1e-78 297.4 238 66.0
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 1.1e-78 297.4 247 64.4
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 1.4e-78 297.0 239 66.1
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 2.4e-78 296.2 240 67.5
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 2.4e-78 296.2 246 67.1
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 2.0e-77 293.1 249 64.3
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 5.9e-77 291.6 247 64.0
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 5.9e-77 291.6 248 66.1
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 1.7e-76 290.0 245 64.1
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 2.9e-76 289.3 245 66.1
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 8.6e-76 287.7 262 60.3
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 8.6e-76 287.7 194 72.7
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.9e-75 286.6 243 65.0
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 1.9e-75 286.6 278 63.7
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 7.2e-75 284.6 248 64.1
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 6.1e-74 281.6 247 62.3
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 1.4e-73 280.4 245 62.4
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 5.2e-73 278.5 253 63.2
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 1.2e-72 277.3 298 57.7
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 2.8e-71 272.7 255 65.1
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 2.4e-70 269.6 252 58.7
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.0e-69 266.5 334 50.9
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 6.6e-68 261.5 290 54.1
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 2.8e-66 256.1 251 59.0
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 3.1e-65 252.7 246 59.8
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 3.4e-64 249.2 247 55.9
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 1.9e-62 243.4 181 71.3
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 1.7e-60 236.9 249 53.0
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 2.3e-60 236.5 263 52.5
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 2.8e-58 229.6 244 58.6
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.1e-57 227.6 253 54.5
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 1.1e-54 217.6 249 54.2
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 7.1e-54 214.9 249 53.8
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 4.6e-53 212.2 216 56.9
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 1.1e-51 207.6 244 47.5
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 7.3e-51 204.9 148 69.6
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 1.8e-49 200.3 166 71.1
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 1.6e-45 187.2 128 74.2
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 1.7e-44 183.7 136 67.6
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 4.7e-42 175.6 150 72.0
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 3.1e-41 172.9 142 64.8
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 5.2e-41 172.2 145 61.4
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 6.0e-37 158.7 256 40.2
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 3.9e-36 156.0 159 54.7
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 5.1e-36 155.6 192 52.6
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 8.7e-36 154.8 342 40.4
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 4.4e-32 142.5 229 38.9
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 1.4e-30 137.5 120 69.2
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 7.9e-29 131.7 244 34.8
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 5.1e-28 129.0 108 63.0
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 6.6e-28 128.6 224 36.2
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 2.9e-23 113.2 60 85.0
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 3.5e-21 106.3 92 56.5
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 2.3e-20 103.6 72 69.4
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 1.5e-16 90.9 79 55.7
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 2.0e-16 90.5 79 54.4
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 4.5e-16 89.4 79 74.7
Pp3c6_13820 Physcomitrium patens HOM05D005017 ORTHO05D006044 6.0e-13 79.0 210 32.4
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.3e-10 71.2 161 34.2
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.1e-06 58.2 34 73.5
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 1.9e-06 57.4 53 56.6


User provided reference genes

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