Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 1.1e-256 889.4 446 100.0
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 3.0e-241 838.2 446 93.9
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 6.0e-226 787.3 434 89.6
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 1.8e-225 785.8 438 89.0
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 8.2e-215 750.4 434 84.1
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 5.3e-214 747.7 434 83.6
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 2.2e-212 742.3 434 83.4
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 3.3e-200 701.8 436 79.8
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 6.9e-198 694.1 433 76.4
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 5.0e-196 688.0 437 78.9
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 8.5e-196 687.2 433 74.4
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 1.4e-193 679.9 433 75.3
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 9.7e-192 673.7 439 73.3
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 6.3e-191 671.0 433 73.4
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 4.1e-190 668.3 437 72.3
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 5.3e-190 667.9 432 73.6
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 5.3e-190 667.9 433 73.7
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 1.5e-189 666.4 446 71.7
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 1.5e-189 666.4 443 73.1
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 7.7e-189 664.1 443 72.7
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 2.2e-188 662.5 433 71.4
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 2.2e-188 662.5 433 72.7
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 5.0e-188 661.4 443 72.2
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 1.1e-187 660.2 433 72.5
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 1.1e-187 660.2 433 73.9
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 1.1e-187 660.2 431 73.3
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 1.9e-187 659.4 434 73.7
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 1.9e-187 659.4 443 72.5
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 3.2e-187 658.7 438 72.6
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 4.2e-187 658.3 433 71.8
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 8.0e-186 654.1 439 70.6
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 6.7e-185 651.0 432 71.8
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 1.5e-184 649.8 444 71.6
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 4.4e-184 648.3 434 71.9
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 9.7e-184 647.1 438 70.3
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 7.0e-182 641.0 432 72.2
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 9.1e-182 640.6 432 72.2
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 3.5e-181 638.6 433 70.2
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 7.7e-181 637.5 433 72.1
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 1.3e-180 636.7 430 69.5
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 2.2e-180 636.0 432 71.5
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 2.9e-180 635.6 444 69.1
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 2.9e-180 635.6 433 68.6
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 5.0e-180 634.8 432 71.1
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 1.9e-179 632.9 433 68.4
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 5.5e-179 631.3 433 68.8
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 4.7e-178 628.2 432 69.4
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 4.7e-178 628.2 432 69.4
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 5.2e-177 624.8 437 67.7
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 8.8e-177 624.0 459 67.1
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 1.2e-176 623.6 376 82.7
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 2.6e-176 622.5 430 69.8
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 7.5e-176 620.9 435 67.8
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 3.7e-175 618.6 473 64.7
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 4.8e-175 618.2 728 49.5
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 1.1e-174 617.1 430 69.5
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.4e-174 616.7 432 67.4
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.4e-174 616.7 432 68.5
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 3.1e-174 615.5 430 68.8
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 3.1e-174 615.5 434 67.7
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 3.1e-174 615.5 430 69.1
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 7.0e-174 614.4 431 68.2
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 3.5e-173 612.1 430 69.1
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 4.5e-173 611.7 434 68.2
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 1.1e-171 607.1 435 65.7
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 4.2e-171 605.1 426 67.4
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 5.5e-171 604.7 430 68.6
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 5.5e-171 604.7 434 68.9
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 7.2e-171 604.4 416 70.7
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 1.2e-170 603.6 362 82.0
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 2.1e-170 602.8 441 66.0
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 2.3e-169 599.4 448 66.5
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 4.0e-169 598.6 443 66.6
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 7.5e-168 594.3 434 67.3
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 1.2e-165 587.0 513 58.9
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 2.0e-165 586.3 434 63.8
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 4.5e-165 585.1 429 64.3
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 1.3e-164 583.6 433 64.4
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 1.7e-164 583.2 472 61.9
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 1.1e-163 580.5 416 68.0
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 1.1e-163 580.5 479 61.0
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 3.6e-162 575.5 432 66.7
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 6.1e-162 574.7 429 65.7
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 1.0e-161 573.9 433 64.9
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 1.4e-161 573.5 433 64.7
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 1.8e-161 573.2 478 61.1
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 3.0e-161 572.4 524 55.5
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 5.2e-161 571.6 434 64.7
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 3.1e-158 562.4 375 72.5
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 3.5e-157 558.9 421 67.0
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 1.3e-156 557.0 448 60.7
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 4.0e-153 545.4 383 70.5
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 2.0e-152 543.1 379 69.7
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.3e-151 540.4 434 62.0
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 1.3e-148 530.4 433 62.8
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 6.6e-148 528.1 380 66.1
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 8.6e-148 527.7 450 61.1
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.5e-147 526.2 380 65.8
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 1.7e-135 486.9 430 57.7
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 1.0e-132 477.6 697 41.2
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 5.6e-131 471.9 300 76.0
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 1.1e-129 467.6 438 53.7
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 1.7e-124 450.3 432 51.2
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.8e-121 440.3 321 65.7
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 1.8e-121 440.3 440 49.5
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 4.9e-119 432.2 339 64.0
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 4.8e-114 415.6 341 60.1
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 8.1e-114 414.8 295 69.2
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 1.9e-110 403.7 449 48.6
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 1.7e-95 354.0 223 77.1
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 2.2e-95 353.6 350 51.1
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.4e-86 324.3 255 64.3
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 5.7e-83 312.4 219 71.2
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 1.3e-74 284.6 237 62.9
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 1.0e-68 265.0 283 51.9
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 1.8e-68 264.2 215 63.7
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 6.7e-68 262.3 161 78.3
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 1.7e-63 247.7 431 34.3
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 8.3e-58 228.8 447 36.2
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 2.7e-56 223.8 159 68.6
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 5.9e-56 222.6 144 73.6
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.8e-52 211.1 134 76.9
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 1.3e-50 204.9 140 71.4
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 1.0e-47 195.3 142 67.6
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 7.0e-41 172.6 318 34.0
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 2.3e-36 157.5 200 46.5
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 8.9e-36 155.6 193 47.2
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.2e-34 151.0 149 49.0
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.2e-27 128.6 135 49.6
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 1.6e-24 118.2 146 49.3
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 7.3e-22 109.4 95 52.6
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 6.4e-18 96.3 56 71.4
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 2.7e-16 90.9 71 57.7
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 7.8e-16 89.4 79 53.2
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 7.8e-16 89.4 75 56.0
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 1.5e-14 85.1 75 53.3
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 2.0e-11 74.7 54 66.7
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 2.6e-11 74.3 85 41.2
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 1.9e-09 68.2 43 69.8
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 9.3e-09 65.9 47 63.8
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 1.7e-07 61.6 43 62.8
TPR.G29431 Trifolium pratense HOM05D033146 ORTHO05D019265 8.7e-07 59.3 44 65.9


User provided reference genes

Program Settings