Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0331G0914 Vigna mungo HOM05D005200 ORTHO05D005760 1.4e-75 286.2 139 100.0
Phvul.010G123400 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 4.4e-66 254.6 139 89.2
Glyma.16G013600 Glycine max HOM05D005200 ORTHO05D005760 3.1e-64 248.4 140 86.4
Glyma.07G045700 Glycine max HOM05D005200 ORTHO05D005760 8.3e-57 223.8 140 78.6
Lalb_Chr10g0101121 Lupinus albus HOM05D005200 ORTHO05D005760 6.4e-49 197.6 141 70.2
Lalb_Chr17g0343251 Lupinus albus HOM05D005200 ORTHO05D005760 1.5e-45 186.4 140 68.6
arahy.Tifrunner.gnm1.ann1.56RDUW Arachis hypogaea HOM05D005200 ORTHO05D005760 8.3e-41 170.6 141 67.4
arahy.Tifrunner.gnm1.ann1.KXG0W2 Arachis hypogaea HOM05D005200 ORTHO05D005760 1.1e-40 170.2 141 67.4
Lj3g0024707 Lotus japonicus HOM05D005200 ORTHO05D005760 1.2e-39 166.8 131 63.4
Lalb_Chr04g0261221 Lupinus albus HOM05D005200 ORTHO05D005760 2.3e-38 162.5 135 62.2
TPR.G18172 Trifolium pratense HOM05D005200 ORTHO05D005760 1.6e-36 156.4 133 61.7
Glyma.19G262400 Glycine max HOM05D005200 ORTHO05D005760 6.2e-36 154.5 136 61.8
Lalb_Chr15g0076711 Lupinus albus HOM05D005200 ORTHO05D005760 6.2e-36 154.5 135 56.3
Glyma.03G263400 Glycine max HOM05D005200 ORTHO05D005760 1.4e-35 153.3 136 62.5
arahy.Tifrunner.gnm1.ann1.F1PVR5 Arachis hypogaea HOM05D005200 ORTHO05D005760 9.8e-34 147.1 139 57.6
arahy.Tifrunner.gnm1.ann1.7PP1M3 Arachis hypogaea HOM05D005200 ORTHO05D005760 1.3e-33 146.7 140 57.1
Lj1g0005720 Lotus japonicus HOM05D005200 ORTHO05D005760 1.1e-32 143.7 147 53.1
Medtr8g023100 Medicago truncatula HOM05D005200 ORTHO05D005760 5.4e-32 141.4 134 58.2
VMungo1309G1714 Vigna mungo HOM05D005200 ORTHO05D005760 2.5e-29 132.5 140 54.3
QL05p001275 Quercus lobata HOM05D005200 ORTHO05D005760 8.1e-28 127.5 134 53.0
Medtr7g117550 Medicago truncatula HOM05D005200 ORTHO05D005760 3.1e-27 125.6 118 55.1
Manes.11G013000 Manihot esculenta HOM05D005200 ORTHO05D005760 6.8e-27 124.4 137 50.4
CiPaw.01G211800 Carya illinoinensis HOM05D005200 ORTHO05D005760 1.5e-26 123.2 136 50.0
Haze_16132 Corylus avellana HOM05D005200 ORTHO05D005760 2.2e-25 119.4 126 54.8
Manes.04G150600 Manihot esculenta HOM05D005200 ORTHO05D005760 3.7e-25 118.6 137 47.4
Dinv37821 Davidia involucrata HOM05D005200 ORTHO05D005760 6.4e-25 117.9 136 48.5
Potri.001G163100 Populus trichocarpa HOM05D005200 ORTHO05D005760 8.4e-25 117.5 138 48.6
CiPaw.02G131300 Carya illinoinensis HOM05D005200 ORTHO05D005760 2.4e-24 115.9 137 48.2
Psat4g165560 Pisum sativum HOM05D005200 ORTHO05D005760 5.4e-24 114.8 97 58.8
Duzib235G1369 Durio zibethinus HOM05D005200 ORTHO05D005760 9.2e-24 114.0 132 45.5
Sabra01G0129600 Salix brachista HOM05D005200 ORTHO05D005760 7.8e-23 110.9 138 43.5
Sabra03G0043200 Salix brachista HOM05D005200 ORTHO05D005760 1.0e-22 110.5 137 46.0
Dinv20386 Davidia involucrata HOM05D005200 ORTHO05D005760 1.3e-22 110.2 126 48.4
Duzib160G0856 Durio zibethinus HOM05D005200 ORTHO05D005760 1.7e-22 109.8 136 44.1
Ciclev10026732m.g Citrus clementina HOM05D005200 ORTHO05D005760 2.3e-22 109.4 138 46.4
TWI23G1266 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 5.1e-22 108.2 137 45.3
Prupe.3G031300 Prunus persica HOM05D005200 ORTHO05D005760 1.5e-21 106.7 138 42.8
CANSAT56G3023 Cannabis sativa HOM05D005200 ORTHO05D005760 2.5e-21 105.9 129 43.4
GSVIVG01016673001 Vitis vinifera HOM05D005200 ORTHO05D005760 2.5e-21 105.9 92 55.4
Thecc.06G129700 Theobroma cacao HOM05D005200 ORTHO05D005760 5.6e-21 104.8 116 48.3
Eucgr.I02161 Eucalyptus grandis HOM05D005200 ORTHO05D005760 7.3e-21 104.4 136 41.2
TWI14G0574 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 9.6e-21 104.0 116 49.1
ClCG09G001380 Citrullus lanatus HOM05D005200 ORTHO05D005760 1.2e-20 103.6 134 43.3
Gorai.011G055500 Gossypium raimondii HOM05D005200 ORTHO05D005760 2.8e-20 102.4 132 42.4
Potri.003G072400 Populus trichocarpa HOM05D005200 ORTHO05D005760 3.6e-20 102.1 100 51.0
MELO3C024308.2 Cucumis melo HOM05D005200 ORTHO05D005760 4.7e-20 101.7 135 41.5
Cfa003464 Carpinus fangiana HOM05D005200 ORTHO05D005760 1.1e-19 100.5 110 52.7
Gohir.A06G143500 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.1e-19 100.5 132 39.4
Cpa.g.sc25.187 Carica papaya HOM05D005200 ORTHO05D005760 1.4e-19 100.1 81 56.8
Gohir.D10G051950 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.8e-19 99.8 132 42.4
Gorai.010G173300 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.8e-19 99.8 132 39.4
Atru.chr1.4140 Acer truncatum HOM05D005200 ORTHO05D005760 2.4e-19 99.4 148 43.9
COL.COLO4_30860 Corchorus olitorius HOM05D005200 ORTHO05D005760 2.4e-19 99.4 136 41.9
Phvul.009G261901 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 3.1e-19 99.0 85 54.1
MD09G1173200 Malus domestica HOM05D005200 ORTHO05D005760 4.0e-19 98.6 123 42.3
Gohir.A10G047648 Gossypium hirsutum HOM05D005200 ORTHO05D005760 6.8e-19 97.8 132 40.9
CsaV3_7G033950 Cucumis sativus L. HOM05D005200 ORTHO05D005760 1.2e-18 97.1 132 41.7
Sed0021338 Sechium edule HOM05D005200 ORTHO05D005760 2.6e-18 95.9 138 40.6
Actinidia21832 Actinidia chinensis HOM05D005200 ORTHO05D005760 1.3e-17 93.6 112 48.2
MD17G1154100 Malus domestica HOM05D005200 ORTHO05D005760 2.2e-17 92.8 129 41.1
Rhsim08G0244400 Rhododendron simsii HOM05D005200 ORTHO05D005760 8.4e-17 90.9 115 43.5
Actinidia26000 Actinidia chinensis HOM05D005200 ORTHO05D005760 4.6e-15 85.1 87 49.4
FAN02G2923 Fragaria x ananassa HOM05D005200 ORTHO05D005760 6.0e-15 84.7 125 40.0
FAN14G3672 Fragaria x ananassa HOM05D005200 ORTHO05D005760 6.0e-15 84.7 125 40.0
Nn6g35724 Nelumbo nucifera HOM05D005200 ORTHO05D005760 6.0e-15 84.7 115 39.1
RcHm_v2.0_Chr2g0147821 Rosa chinensis HOM05D005200 ORTHO05D005760 7.8e-15 84.3 136 38.2
FvH4_6g35780 Fragaria vesca HOM05D005200 ORTHO05D005760 1.0e-14 84.0 125 40.0
FAN05G3446 Fragaria x ananassa HOM05D005200 ORTHO05D005760 1.0e-14 84.0 125 40.0
FAN09G2652 Fragaria x ananassa HOM05D005200 ORTHO05D005760 1.0e-14 84.0 125 40.0
FAN14G2768 Fragaria x ananassa HOM05D005200 ORTHO05D005760 1.0e-14 84.0 125 40.0
PGR119G0182 Punica granatum HOM05D005200 ORTHO05D005760 1.0e-14 84.0 95 48.4
Oeu008400.1 Olea europaea HOM05D005200 ORTHO05D005760 1.3e-14 83.6 90 48.9
PSO135G0283 Papaver somniferum HOM05D005200 ORTHO05D005760 1.3e-14 83.6 89 42.7
Actinidia31148 Actinidia chinensis HOM05D005200 ORTHO05D005760 1.7e-14 83.2 94 44.7
SalBow7G2254 Salvia bowleyana HOM05D005200 ORTHO05D005760 2.3e-14 82.8 76 53.9
TAR626G1734 Trochodendron aralioides HOM05D005200 ORTHO05D005760 3.9e-14 82.0 120 39.2
Peaxi162Scf00038g02243 Petunia axillaris HOM05D005200 ORTHO05D005760 6.6e-14 81.3 79 48.1
Gohir.A09G075600 Gossypium hirsutum HOM05D005200 ORTHO05D005760 8.7e-14 80.9 102 42.2
Gohir.D09G075300 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.5e-13 80.1 104 40.4
Gorai.006G090400 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.5e-13 80.1 104 40.4
AUR62001409 Chenopodium quinoa HOM05D000001 ORTHO05D009753 4.3e-13 78.6 120 41.7
PGSC0003DMG400009175 Solanum tuberosum HOM05D005200 ORTHO05D005760 5.6e-13 78.2 82 48.8
MSTRG.4536 Avicennia marina HOM05D005200 ORTHO05D005760 7.3e-13 77.8 94 41.5
Nitab4.5_0008798g0020 Nicotiana tabacum HOM05D005200 ORTHO05D005760 7.3e-13 77.8 88 43.2
A01p39430 Brassica napus HOM05D005200 ORTHO05D005760 1.3e-12 77.0 119 39.5
MSTRG.10915 Avicennia marina HOM05D005200 ORTHO05D005760 2.1e-12 76.3 86 45.3
Sopen03g041350 Solanum pennellii HOM05D005200 ORTHO05D005760 4.8e-12 75.1 76 51.3
BraA01t03983Z Brassica rapa HOM05D005200 ORTHO05D005760 6.2e-12 74.7 119 38.7
vmacro15084 Vaccinium macrocarpon HOM05D005200 ORTHO05D005760 1.1e-11 73.9 59 52.5
AUR62025618 Chenopodium quinoa HOM05D000001 ORTHO05D009753 1.4e-11 73.6 87 47.1
THA.LOC104815599 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 1.4e-11 73.6 117 37.6
AL3G26600 Arabidopsis lyrata HOM05D005200 ORTHO05D005760 1.8e-11 73.2 91 39.6
Carub.0003s1397 Capsella rubella HOM05D005200 ORTHO05D005760 1.8e-11 73.2 112 37.5
Thhalv10021716m.g Eutrema salsugineum HOM05D005200 ORTHO05D005760 1.8e-11 73.2 79 45.6
PGSC0003DMG402028848 Solanum tuberosum HOM05D005200 ORTHO05D005760 1.8e-11 73.2 71 47.9
Gohir.D06G148800 Gossypium hirsutum HOM05D005200 ORTHO05D005760 2.4e-11 72.8 87 40.2
Lsat_1_v5_gn_5_137940 Lactuca sativa HOM05D005200 ORTHO05D005760 2.4e-11 72.8 74 45.9
C01p50260 Brassica napus HOM05D005200 ORTHO05D005760 3.1e-11 72.4 121 38.8
BolC1t04981H Brassica oleracea HOM05D005200 ORTHO05D005760 3.1e-11 72.4 121 38.8
Solyc03g123580.4 Solanum lycopersicum HOM05D005200 ORTHO05D005760 3.1e-11 72.4 73 52.1
Migut.I01128 Erythranthe guttata HOM05D005200 ORTHO05D005760 4.0e-11 72.0 62 53.2
BcaC09g48397 Brassica carinata HOM05D005200 ORTHO05D005760 5.3e-11 71.6 93 46.2
CARHR089210 Cardamine hirsuta HOM05D005200 ORTHO05D005760 5.3e-11 71.6 92 41.3
THA.LOC104822615 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 5.3e-11 71.6 72 51.4
Sp3g12570 Schrenkiella parvula HOM05D005200 ORTHO05D005760 9.0e-11 70.9 86 41.9
THA.LOC104810392 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 1.2e-10 70.5 130 34.6
Aqoxy7G04178 Aquilegia oxysepala HOM05D005200 ORTHO05D005760 1.5e-10 70.1 90 40.0
BcaB06g25397 Brassica carinata HOM05D005200 ORTHO05D005760 1.5e-10 70.1 106 39.6
Solyc12g055700.3 Solanum lycopersicum HOM05D005200 ORTHO05D005760 1.5e-10 70.1 71 46.5
AT3G14280 Arabidopsis thaliana HOM05D005200 ORTHO05D005760 2.0e-10 69.7 81 46.9
BcaB04g18835 Brassica carinata HOM05D005200 ORTHO05D005760 2.0e-10 69.7 90 42.2
Cc04_g00760 Coffea canephora HOM05D005200 ORTHO05D005760 2.0e-10 69.7 114 37.7
Sopen12g024150 Solanum pennellii HOM05D005200 ORTHO05D005760 2.0e-10 69.7 71 45.1
Lsat_1_v5_gn_4_92221 Lactuca sativa HOM05D005200 ORTHO05D005760 2.6e-10 69.3 72 47.2
HanXRQChr09g0277231 Helianthus annuus HOM05D005200 ORTHO05D005760 4.4e-10 68.6 71 46.5
Oeu015475.1 Olea europaea HOM05D005200 ORTHO05D005760 4.4e-10 68.6 59 49.2
Aa31LG8G1550 Aethionema arabicum HOM05D005200 ORTHO05D005760 5.8e-10 68.2 56 51.8
HanXRQChr10g0311991 Helianthus annuus HOM05D005200 ORTHO05D005760 5.8e-10 68.2 75 45.3
A05p35100 Brassica napus HOM05D005200 ORTHO05D005760 1.3e-09 67.0 134 32.8
BcaC05g29096 Brassica carinata HOM05D005200 ORTHO05D005760 1.7e-09 66.6 118 36.4
C05p53060 Brassica napus HOM05D005200 ORTHO05D005760 1.7e-09 66.6 118 36.4
BolC5t33987H Brassica oleracea HOM05D005200 ORTHO05D005760 1.7e-09 66.6 118 36.4
BraA05t22323Z Brassica rapa HOM05D005200 ORTHO05D005760 2.2e-09 66.2 100 38.0
Os10g0390701 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 2.2e-09 66.2 52 59.6
Ah.08g217360 Amaranthus hybridus HOM05D005200 ORTHO05D005760 2.9e-09 65.9 62 50.0
HanXRQChr12g0360121 Helianthus annuus HOM05D005200 ORTHO05D005760 2.9e-09 65.9 75 45.3
MBI19_g32869_MAGBIO Magnolia biondii HOM05D005200 ORTHO05D005760 2.9e-09 65.9 62 46.8
HPP92_005865 Vanilla planifolia HOM05D005200 ORTHO05D005760 2.9e-09 65.9 76 42.1
DCAR_007659 Daucus carota HOM05D005200 ORTHO05D005760 6.4e-09 64.7 80 42.5
SalBow6G5493 Salvia bowleyana HOM05D005200 ORTHO05D005760 8.4e-09 64.3 56 57.1
ClCG07G014310 Citrullus lanatus HOM05D005200 ORTHO05D005760 1.4e-08 63.5 72 45.8
ECA234G4728 Erigeron canadensis HOM05D005200 ORTHO05D005760 1.4e-08 63.5 67 47.8
SGA_v2.0_scaffold71G23919 Striga asiatica HOM05D005200 ORTHO05D005760 2.4e-08 62.8 39 69.2
ATR0099G034 Amborella trichopoda HOM05D005200 ORTHO05D005760 4.2e-08 62.0 100 35.0
Zm00001eb203790 Zea mays HOM05D005200 ORTHO05D005760 5.4e-08 61.6 53 52.8
CsaV3_3G030990 Cucumis sativus L. HOM05D005200 ORTHO05D005760 7.1e-08 61.2 117 33.3
SEGI_01582 Sequoiadendron giganteum HOM05D055431 ORTHO05D005760 7.1e-08 61.2 84 33.3
Zm00001eb278460 Zea mays HOM05D005200 ORTHO05D005760 9.3e-08 60.8 57 45.6
Pp3c19_6810 Physcomitrium patens HOM05D023101 ORTHO05D005760 1.2e-07 60.5 63 42.9
Os06g0193300 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 2.1e-07 59.7 52 46.2
Sed0016877 Sechium edule HOM05D005200 ORTHO05D005760 2.1e-07 59.7 87 39.1
MELO3C022697.2 Cucumis melo HOM05D005200 ORTHO05D005760 7.9e-07 57.8 82 37.8
Pp3c22_2900 Physcomitrium patens HOM05D023101 ORTHO05D005760 7.9e-07 57.8 71 38.0
Hund18641 Selenicereus undatus HOM05D005200 ORTHO05D005760 1.0e-06 57.4 88 39.8
Os02g0782900 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 3.9e-06 55.5 89 32.6


User provided reference genes

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