Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0331G0515 Vigna mungo HOM05D005654 ORTHO05D006438 2.7e-89 332.0 176 100.0
Phvul.010G058900 Phaseolus vulgaris HOM05D005654 ORTHO05D006438 4.2e-82 308.1 174 93.1
Glyma.13G002400 Glycine max HOM05D005654 ORTHO05D006438 6.3e-78 294.3 173 89.6
Glyma.20G066700 Glycine max HOM05D005654 ORTHO05D006438 1.7e-75 286.2 173 87.9
Glyma.16G220800 Glycine max HOM05D005654 ORTHO05D006438 2.7e-73 278.9 173 86.7
Lj3g0016616 Lotus japonicus HOM05D005654 ORTHO05D006438 1.0e-72 276.9 173 85.0
Lj5g0021075 Lotus japonicus HOM05D005654 ORTHO05D006438 1.5e-66 256.5 173 80.3
Ca_14022_v3 Cicer arietinum L. HOM05D005654 ORTHO05D006438 2.3e-64 249.2 169 79.9
Lalb_Chr06g0172541 Lupinus albus HOM05D005654 ORTHO05D006438 3.4e-63 245.4 182 74.7
TPR.G24134 Trifolium pratense HOM05D005654 ORTHO05D006438 9.2e-61 237.3 174 76.4
Medtr8g077440 Medicago truncatula HOM05D005654 ORTHO05D006438 4.7e-57 224.9 172 75.0
arahy.Tifrunner.gnm1.ann1.IV76VY Arachis hypogaea HOM05D005654 ORTHO05D006438 4.0e-56 221.9 193 66.3
QL06p034798 Quercus lobata HOM05D005654 ORTHO05D006438 4.0e-56 221.9 171 73.7
QL10p007390 Quercus lobata HOM05D005654 ORTHO05D006438 4.0e-56 221.9 171 73.7
FAN07G1349 Fragaria x ananassa HOM05D005654 ORTHO05D006438 5.9e-52 208.0 177 67.8
GSVIVG01018856001 Vitis vinifera HOM05D005654 ORTHO05D006438 7.8e-52 207.6 185 68.6
ClCG09G019610 Citrullus lanatus HOM05D005654 ORTHO05D006438 1.7e-51 206.5 180 70.0
Thecc.01G026300 Theobroma cacao HOM05D005654 ORTHO05D006438 1.5e-50 203.4 177 67.2
Haze_03832 Corylus avellana HOM05D005654 ORTHO05D006438 3.3e-50 202.2 174 68.4
FvH4_2g15150 Fragaria vesca HOM05D005654 ORTHO05D006438 3.3e-50 202.2 176 65.3
FAN17G0825 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.3e-50 202.2 177 66.7
COL.COLO4_21992 Corchorus olitorius HOM05D005654 ORTHO05D006438 9.5e-50 200.7 177 67.2
FAN22G0080 Fragaria x ananassa HOM05D005654 ORTHO05D006438 9.5e-50 200.7 177 66.1
RcHm_v2.0_Chr6g0277811 Rosa chinensis HOM05D005654 ORTHO05D006438 9.5e-50 200.7 178 66.9
CSS0048601 Camellia sinensis var. sinensis HOM05D005654 ORTHO05D006438 1.2e-49 200.3 184 66.3
Hma1.2p1_1114F.1_g258780 Hydrangea macrophylla HOM05D005654 ORTHO05D006438 1.2e-49 200.3 185 66.5
QL08p063081 Quercus lobata HOM05D005654 ORTHO05D006438 1.2e-49 200.3 180 66.1
Sopen04g003980 Solanum pennellii HOM05D005654 ORTHO05D006438 1.6e-49 199.9 176 65.9
arahy.Tifrunner.gnm1.ann1.I9PPQ0 Arachis hypogaea HOM05D005654 ORTHO05D006438 2.1e-49 199.5 178 65.2
CANSAT01G3286 Cannabis sativa HOM05D005654 ORTHO05D006438 2.1e-49 199.5 171 65.5
Sed0005955 Sechium edule HOM05D005654 ORTHO05D006438 2.1e-49 199.5 179 65.9
THA.LOC104819191 Tarenaya hassleriana HOM05D005654 ORTHO05D006438 2.1e-49 199.5 180 65.0
Gohir.A11G179400 Gossypium hirsutum HOM05D005654 ORTHO05D006438 2.8e-49 199.1 181 66.3
TWI60G0108 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 3.6e-49 198.7 186 66.7
Solyc04g008800.3 Solanum lycopersicum HOM05D005654 ORTHO05D006438 4.7e-49 198.4 176 65.3
Prupe.8G013400 Prunus persica HOM05D005654 ORTHO05D006438 1.1e-48 197.2 181 65.7
MELO3C005244.2 Cucumis melo HOM05D005654 ORTHO05D006438 1.4e-48 196.8 179 65.4
CiPaw.08G137200 Carya illinoinensis HOM05D005654 ORTHO05D006438 1.8e-48 196.4 176 66.5
CsaV3_5G027780 Cucumis sativus L. HOM05D005654 ORTHO05D006438 3.1e-48 195.7 179 64.8
PGSC0003DMG400025306 Solanum tuberosum HOM05D005654 ORTHO05D006438 3.1e-48 195.7 176 64.2
Nn1g05784 Nelumbo nucifera HOM05D005654 ORTHO05D006438 5.2e-48 194.9 182 64.3
FvH4_4g16440 Fragaria vesca HOM05D005654 ORTHO05D006438 1.2e-47 193.7 177 65.0
FAN12G4326 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.2e-47 193.7 177 65.0
Lj2A460T79 Lonicera japonica HOM05D005654 ORTHO05D006438 1.2e-47 193.7 176 65.3
TAR381G0206 Trochodendron aralioides HOM05D005654 ORTHO05D006438 3.4e-47 192.2 179 65.9
Eucgr.H02778 Eucalyptus grandis HOM05D005654 ORTHO05D006438 4.4e-47 191.8 182 63.7
Gorai.007G199000 Gossypium raimondii HOM05D005654 ORTHO05D006438 9.8e-47 190.7 183 63.4
Nitab4.5_0007445g0010 Nicotiana tabacum HOM05D005654 ORTHO05D006438 1.7e-46 189.9 182 62.1
Gohir.D11G187100 Gossypium hirsutum HOM05D005654 ORTHO05D006438 2.2e-46 189.5 180 65.0
Nitab4.5_0002707g0030 Nicotiana tabacum HOM05D005654 ORTHO05D006438 2.2e-46 189.5 178 63.5
Actinidia26105 Actinidia chinensis HOM05D005654 ORTHO05D006438 2.9e-46 189.1 172 65.7
MD10G1009400 Malus domestica HOM05D005654 ORTHO05D006438 8.3e-46 187.6 177 65.0
CAN.G419.13 Capsicum annuum HOM05D005654 ORTHO05D006438 1.1e-45 187.2 182 62.6
Dinv33576 Davidia involucrata HOM05D005654 ORTHO05D006438 1.1e-45 187.2 177 62.1
Manes.02G099200 Manihot esculenta HOM05D005654 ORTHO05D006438 1.9e-45 186.4 184 62.5
MD05G1010700 Malus domestica HOM05D005654 ORTHO05D006438 2.4e-45 186.0 182 62.6
Peaxi162Scf00329g00119 Petunia axillaris HOM05D005654 ORTHO05D006438 5.4e-45 184.9 174 63.8
Sabra07G0015400 Salix brachista HOM05D005654 ORTHO05D006438 9.2e-45 184.1 182 61.5
Dinv33575 Davidia involucrata HOM05D005654 ORTHO05D006438 2.3e-43 179.5 135 73.3
Cc07_g10180 Coffea canephora HOM05D005654 ORTHO05D006438 6.6e-43 177.9 187 59.4
Psat0s439g0080 Pisum sativum HOM05D005654 ORTHO05D006438 6.6e-43 177.9 124 76.6
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 8.6e-43 177.6 176 61.4
MSTRG.23266 Avicennia marina HOM05D005654 ORTHO05D006438 1.9e-42 176.4 178 57.9
ECA248G0981 Erigeron canadensis HOM05D005654 ORTHO05D006438 1.9e-42 176.4 184 59.8
Thhalv10010748m.g Eutrema salsugineum HOM05D005654 ORTHO05D006438 1.9e-42 176.4 184 59.2
Oeu035320.1 Olea europaea HOM05D005654 ORTHO05D006438 1.9e-42 176.4 123 76.4
Migut.H02503 Erythranthe guttata HOM05D005654 ORTHO05D006438 2.5e-42 176.0 177 58.8
Psat2g190960 Pisum sativum HOM05D005654 ORTHO05D006438 2.5e-42 176.0 121 76.9
AT3G51010 Arabidopsis thaliana HOM05D005654 ORTHO05D006438 3.3e-42 175.6 185 59.5
Lsat_1_v5_gn_9_115780 Lactuca sativa HOM05D005654 ORTHO05D006438 3.3e-42 175.6 180 58.3
BraA09t39870Z Brassica rapa HOM05D005654 ORTHO05D006438 4.3e-42 175.3 176 60.8
SalBow8G3171 Salvia bowleyana HOM05D005654 ORTHO05D006438 4.3e-42 175.3 176 59.1
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 9.5e-42 174.1 177 60.5
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 9.5e-42 174.1 177 60.5
Sc18g0007030 Simmondsia chinensis HOM05D005654 ORTHO05D006438 9.5e-42 174.1 182 58.8
Manes.01G140500 Manihot esculenta HOM05D005654 ORTHO05D006438 1.2e-41 173.7 185 60.0
Sp5g11200 Schrenkiella parvula HOM05D005654 ORTHO05D006438 1.2e-41 173.7 184 58.7
PSO170G2173 Papaver somniferum HOM05D005654 ORTHO05D006438 2.1e-41 172.9 183 58.5
AL5G31430 Arabidopsis lyrata HOM05D005654 ORTHO05D006438 2.8e-41 172.6 185 58.4
Carub.0005s1741 Capsella rubella HOM05D005654 ORTHO05D006438 2.8e-41 172.6 184 58.7
PSO339G4156 Papaver somniferum HOM05D005654 ORTHO05D006438 2.8e-41 172.6 187 58.3
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 3.6e-41 172.2 177 60.5
BcaC06g33063 Brassica carinata HOM05D005654 ORTHO05D006438 8.1e-41 171.0 177 59.3
BcaC07g39579 Brassica carinata HOM05D005654 ORTHO05D006438 8.1e-41 171.0 176 59.1
C08p26310 Brassica napus HOM05D005654 ORTHO05D006438 8.1e-41 171.0 176 59.1
PGR119G1083 Punica granatum HOM05D005654 ORTHO05D006438 1.1e-40 170.6 188 58.5
BolC8t50249H Brassica oleracea HOM05D005654 ORTHO05D006438 2.3e-40 169.5 176 59.1
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 5.2e-40 168.3 177 59.3
BcaNung00403 Brassica carinata HOM05D005654 ORTHO05D006438 8.9e-40 167.5 181 58.0
Oeu021744.2 Olea europaea HOM05D005654 ORTHO05D006438 8.9e-40 167.5 228 49.6
PSO528G0264 Papaver somniferum HOM05D005654 ORTHO05D006438 8.9e-40 167.5 182 56.6
Lj4A211T64 Lonicera japonica HOM05D005654 ORTHO05D006438 3.4e-39 165.6 199 56.3
Aqoxy6G01210 Aquilegia oxysepala HOM05D005654 ORTHO05D006438 4.4e-39 165.2 178 56.7
BcaB01g00554 Brassica carinata HOM05D005654 ORTHO05D006438 9.9e-39 164.1 182 56.6
HanXRQChr10g0278901 Helianthus annuus HOM05D005654 ORTHO05D006438 1.3e-38 163.7 169 58.0
MBI01_g45163_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 8.3e-38 161.0 185 54.1
Aa31LG4G19130 Aethionema arabicum HOM05D005654 ORTHO05D006438 1.9e-37 159.8 182 54.9
SGA_v2.0_scaffold9G04932 Striga asiatica HOM05D005654 ORTHO05D006438 3.2e-37 159.1 133 65.4
FAN20G0529 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.3e-35 152.9 126 68.3
Ciclev10003765m.g Citrus clementina HOM05D005654 ORTHO05D006438 1.1e-34 150.6 129 66.7
Hund00373 Selenicereus undatus HOM05D005654 ORTHO05D006438 9.5e-34 147.5 186 53.8
CDE04G0601 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 2.1e-33 146.4 184 53.3
CDE12G0226 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 6.2e-33 144.8 184 53.3
HPP92_013005 Vanilla planifolia HOM05D005654 ORTHO05D006438 1.4e-32 143.7 118 61.9
AUR62027117 Chenopodium quinoa HOM05D005654 ORTHO05D006438 3.4e-31 139.0 182 50.5
AUR62012893 Chenopodium quinoa HOM05D005654 ORTHO05D006438 1.3e-30 137.1 182 50.0
Cfa006918 Carpinus fangiana HOM05D005654 ORTHO05D006438 4.9e-30 135.2 90 82.2
ATR0605G129 Amborella trichopoda HOM05D005654 ORTHO05D006438 3.2e-29 132.5 116 64.7
Sed0001903 Sechium edule HOM05D005654 ORTHO05D006438 4.1e-29 132.1 167 53.3
TWI09G1445 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 4.1e-29 132.1 90 81.1
FAN24G1434 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.2e-28 130.6 160 50.0
Zm00001eb265250 Zea mays HOM05D005654 ORTHO05D006438 7.8e-28 127.9 117 60.7
DCAR_025978 Daucus carota HOM05D005654 ORTHO05D006438 1.3e-27 127.1 177 51.4
EL10Ac9g22080 Beta vulgaris HOM05D005654 ORTHO05D006438 1.1e-26 124.0 186 45.7
Cpa.g.sc217.22 Carica papaya HOM05D005654 ORTHO05D006438 1.5e-26 123.6 161 49.7
Os05g0126200 Oryza sativa ssp. japonica HOM05D005654 ORTHO05D006438 3.3e-26 122.5 186 46.2
Potri.007G018300 Populus trichocarpa HOM05D005654 ORTHO05D006438 3.3e-26 122.5 133 55.6
SGA_v2.0_scaffold280G46859 Striga asiatica HOM05D005654 ORTHO05D006438 1.6e-25 120.2 128 53.9
Nn5g29728 Nelumbo nucifera HOM05D005654 ORTHO05D006438 3.6e-25 119.0 175 49.1
CARHR160580 Cardamine hirsuta HOM05D005654 ORTHO05D006438 1.1e-24 117.5 91 72.5
Ah.08g209860 Amaranthus hybridus HOM05D005654 ORTHO05D006438 4.4e-23 112.1 140 52.1
Rhsim08G0123600 Rhododendron simsii HOM05D005654 ORTHO05D006438 7.6e-23 111.3 179 48.6
Zm00001eb414250 Zea mays HOM05D005654 ORTHO05D006438 2.1e-17 93.2 89 58.4
SEGI_21166 Sequoiadendron giganteum HOM05D005654 ORTHO05D006438 8.1e-17 91.3 67 67.2
Lalb_Chr02g0154671 Lupinus albus HOM05D005654 ORTHO05D006438 1.1e-16 90.9 87 56.3
unitig_747.g21954 Utricularia gibba HOM05D005654 ORTHO05D006438 9.0e-16 87.8 75 58.7
SHI03481 Sapria himalayana HOM05D005654 ORTHO05D006438 6.4e-14 81.6 111 50.5
Zm00001eb355020 Zea mays HOM05D005654 ORTHO05D006438 7.1e-13 78.2 120 45.0
Zm00001eb035810 Zea mays HOM05D005654 ORTHO05D006438 6.0e-12 75.1 81 55.6
FAN15G1271 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.0e-11 74.3 58 75.9
SHI05467 Sapria himalayana HOM05D005654 ORTHO05D006438 1.0e-11 74.3 64 64.1
MBI01_g11791_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 6.7e-11 71.6 138 41.3
Zm00001eb078300 Zea mays HOM05D000349 ORTHO05D010734 5.6e-10 68.6 80 50.0
Zm00001eb309330 Zea mays HOM05D000349 ORTHO05D006438 5.6e-10 68.6 80 50.0
Zm00001eb093520 Zea mays HOM05D005654 ORTHO05D006438 9.0e-08 61.2 62 53.2
SHI06070 Sapria himalayana HOM05D005654 ORTHO05D006438 1.5e-07 60.5 85 47.1
SHI10625 Sapria himalayana HOM05D020241 ORTHO05D006438 2.0e-07 60.1 60 56.7
Mapoly0001s0539 Marchantia polymorpha HOM05D024399 ORTHO05D023494 4.5e-07 58.9 169 33.1
CARHR160590 Cardamine hirsuta HOM05D005654 ORTHO05D006438 4.9e-06 55.5 95 43.2
CAN.G419.11 Capsicum annuum HOM05D005654 ORTHO05D006438 6.4e-06 55.1 40 77.5
FAN24G2610 Fragaria x ananassa HOM05D005654 ORTHO05D006438 6.4e-06 55.1 43 74.4


User provided reference genes

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