Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0251G2803 Vigna mungo HOM05D002457 ORTHO05D005750 1.2e-150 536.6 288 100.0
Phvul.009G032400 Phaseolus vulgaris HOM05D002457 ORTHO05D005750 3.5e-33 146.4 105 71.4
Glyma.06G101600 Glycine max HOM05D002457 ORTHO05D005750 7.3e-31 138.7 105 68.6
Lj1g0014547 Lotus japonicus HOM05D002457 ORTHO05D005750 1.8e-26 124.0 105 60.0
Ca_16043_v3 Cicer arietinum L. HOM05D002457 ORTHO05D005750 7.0e-26 122.1 114 57.0
arahy.Tifrunner.gnm1.ann1.H9D2WH Arachis hypogaea HOM05D002457 ORTHO05D005750 7.8e-25 118.6 109 56.0
arahy.Tifrunner.gnm1.ann1.Y876JP Arachis hypogaea HOM05D002457 ORTHO05D005750 1.3e-24 117.9 104 58.7
Medtr3g099370 Medicago truncatula HOM05D002457 ORTHO05D005750 8.6e-24 115.2 104 57.7
Haze_22295 Corylus avellana HOM05D002457 ORTHO05D005750 3.6e-22 109.8 109 53.2
Lalb_Chr11g0065321 Lupinus albus HOM05D002457 ORTHO05D005750 3.6e-22 109.8 121 49.6
TPR.G14216 Trifolium pratense HOM05D002457 ORTHO05D005750 4.7e-22 109.4 104 56.7
Psat5g051160 Pisum sativum HOM05D002457 ORTHO05D005750 6.2e-22 109.0 105 55.2
QL12p037399 Quercus lobata HOM05D002457 ORTHO05D005750 6.2e-22 109.0 110 50.9
QL12p038698 Quercus lobata HOM05D002457 ORTHO05D005750 6.2e-22 109.0 110 50.9
CiPaw.07G177900 Carya illinoinensis HOM05D002457 ORTHO05D005750 2.3e-21 107.1 109 52.3
TAR381G1374 Trochodendron aralioides HOM05D002457 ORTHO05D005750 6.8e-21 105.5 109 52.3
Cfa013661 Carpinus fangiana HOM05D002457 ORTHO05D005750 1.2e-20 104.8 109 51.4
PSO447G0244 Papaver somniferum HOM05D002457 ORTHO05D005750 2.0e-20 104.0 109 50.5
RcHm_v2.0_Chr7g0243141 Rosa chinensis HOM05D002457 ORTHO05D005750 2.6e-20 103.6 122 46.7
Manes.18G065400 Manihot esculenta HOM05D002457 ORTHO05D005750 4.4e-20 102.8 110 48.2
PSO210G3704 Papaver somniferum HOM05D002457 ORTHO05D005750 5.8e-20 102.4 109 49.5
FAN13G1549 Fragaria x ananassa HOM05D002457 ORTHO05D005750 1.7e-19 100.9 121 46.3
RcHm_v2.0_Chr7g0243351 Rosa chinensis HOM05D002457 ORTHO05D005750 1.7e-19 100.9 121 47.1
FvH4_5g36800 Fragaria vesca HOM05D002457 ORTHO05D005750 2.2e-19 100.5 121 45.5
FAN04G0153 Fragaria x ananassa HOM05D002457 ORTHO05D005750 2.2e-19 100.5 121 46.3
FAN18G1557 Fragaria x ananassa HOM05D002457 ORTHO05D005750 2.2e-19 100.5 121 45.5
Ciclev10000161m.g Citrus clementina HOM05D002457 ORTHO05D005750 8.3e-19 98.6 113 48.7
Potri.002G099400 Populus trichocarpa HOM05D002457 ORTHO05D005750 8.3e-19 98.6 108 50.0
COL.COLO4_12026 Corchorus olitorius HOM05D002457 ORTHO05D005750 1.1e-18 98.2 104 51.0
FAN08G0375 Fragaria x ananassa HOM05D002457 ORTHO05D005750 1.1e-18 98.2 121 45.5
SGA_v2.0_scaffold28G11909 Striga asiatica HOM05D002457 ORTHO05D005750 1.9e-18 97.4 122 45.9
Aqoxy6G00731 Aquilegia oxysepala HOM05D002457 ORTHO05D005750 2.4e-18 97.1 107 49.5
MD08G1186800 Malus domestica HOM05D002457 ORTHO05D005750 5.4e-18 95.9 107 48.6
Nn1g05429 Nelumbo nucifera HOM05D002457 ORTHO05D005750 7.0e-18 95.5 110 47.3
Sabra02G0078000 Salix brachista HOM05D002457 ORTHO05D005750 7.0e-18 95.5 108 49.1
GSVIVG01009071001 Vitis vinifera HOM05D002457 ORTHO05D005750 1.2e-17 94.7 103 49.5
Atru.chr13.1133 Acer truncatum HOM05D002457 ORTHO05D005750 1.6e-17 94.4 112 49.1
Oeu054770.1 Olea europaea HOM05D002457 ORTHO05D005750 2.0e-17 94.0 103 50.5
SGA_v2.0_scaffold84G26485 Striga asiatica HOM05D002457 ORTHO05D005750 2.0e-17 94.0 122 45.1
Thecc.08G103800 Theobroma cacao HOM05D002457 ORTHO05D005750 3.5e-17 93.2 103 49.5
ATR0782G122 Amborella trichopoda HOM05D002457 ORTHO05D005750 4.6e-17 92.8 122 44.3
Dinv19118 Davidia involucrata HOM05D002457 ORTHO05D005750 7.8e-17 92.0 109 46.8
Migut.N02884 Erythranthe guttata HOM05D002457 ORTHO05D005750 1.0e-16 91.7 110 44.5
MSTRG.22163 Avicennia marina HOM05D002457 ORTHO05D005750 1.7e-16 90.9 134 40.3
Gohir.D01G115200 Gossypium hirsutum HOM05D002457 ORTHO05D005750 2.3e-16 90.5 105 47.6
Gorai.002G140900 Gossypium raimondii HOM05D002457 ORTHO05D005750 2.3e-16 90.5 105 47.6
MELO3C011038.2 Cucumis melo HOM05D002457 ORTHO05D005750 3.0e-16 90.1 107 46.7
CANSAT54G2291 Cannabis sativa HOM05D002457 ORTHO05D005750 3.9e-16 89.7 103 49.5
Lj4C97T15 Lonicera japonica HOM05D002457 ORTHO05D005750 3.9e-16 89.7 103 47.6
ClCG08G011220 Citrullus lanatus HOM05D002457 ORTHO05D005750 5.0e-16 89.4 103 46.6
Gohir.A01G132300 Gossypium hirsutum HOM05D002457 ORTHO05D005750 5.0e-16 89.4 105 47.6
EL10Ac1g01165 Beta vulgaris HOM05D002457 ORTHO05D005750 6.6e-16 89.0 105 45.7
MBI02_g33236_MAGBIO Magnolia biondii HOM05D002457 ORTHO05D005750 8.6e-16 88.6 103 47.6
MD15G1372700 Malus domestica HOM05D002457 ORTHO05D005750 1.5e-15 87.8 109 46.8
RcHm_v2.0_Chr7g0242931 Rosa chinensis HOM05D002457 ORTHO05D005750 1.5e-15 87.8 98 48.0
BcaC08g47405 Brassica carinata HOM05D002457 ORTHO05D005750 1.9e-15 87.4 116 44.0
Carub.0002s2518 Capsella rubella HOM05D002457 ORTHO05D005750 1.9e-15 87.4 110 45.5
AUR62018953 Chenopodium quinoa HOM05D002457 ORTHO05D005750 1.9e-15 87.4 110 43.6
CsaV3_2G029800 Cucumis sativus L. HOM05D002457 ORTHO05D005750 1.9e-15 87.4 103 45.6
Sp5g33400 Schrenkiella parvula HOM05D002457 ORTHO05D005750 1.9e-15 87.4 110 44.5
Sed0005289 Sechium edule HOM05D002457 ORTHO05D005750 1.9e-15 87.4 103 44.7
BcaB03g16003 Brassica carinata HOM05D002457 ORTHO05D005750 2.5e-15 87.0 110 43.6
Thhalv10018079m.g Eutrema salsugineum HOM05D002457 ORTHO05D005750 2.5e-15 87.0 110 43.6
Solyc04g074490.3 Solanum lycopersicum HOM05D002457 ORTHO05D005750 3.3e-15 86.7 109 44.0
Sopen04g029500 Solanum pennellii HOM05D002457 ORTHO05D005750 3.3e-15 86.7 109 44.0
CAN.G970.12 Capsicum annuum HOM05D002457 ORTHO05D005750 4.3e-15 86.3 109 45.0
Prupe.1G521300 Prunus persica HOM05D002457 ORTHO05D005750 4.3e-15 86.3 101 49.5
CARHR071750 Cardamine hirsuta HOM05D002457 ORTHO05D005750 9.5e-15 85.1 123 42.3
vmacro21245 Vaccinium macrocarpon HOM05D002457 ORTHO05D005750 9.5e-15 85.1 108 43.5
vmacro21299 Vaccinium macrocarpon HOM05D002457 ORTHO05D005750 9.5e-15 85.1 108 43.5
AUR62027799 Chenopodium quinoa HOM05D002457 ORTHO05D005750 1.6e-14 84.3 110 42.7
Gohir.A05G224700 Gossypium hirsutum HOM05D002457 ORTHO05D005750 1.6e-14 84.3 122 41.8
BcaB05g25129 Brassica carinata HOM05D002457 ORTHO05D005750 2.1e-14 84.0 121 39.7
A07p43570 Brassica napus HOM05D002457 ORTHO05D005750 2.1e-14 84.0 116 41.4
BraA07t31869Z Brassica rapa HOM05D002457 ORTHO05D005750 2.1e-14 84.0 116 41.4
TWI12G1349 Tripterygium wilfordii HOM05D002457 ORTHO05D005750 2.1e-14 84.0 104 44.2
Nitab4.5_0000786g0170 Nicotiana tabacum HOM05D002457 ORTHO05D005750 3.6e-14 83.2 104 45.2
Rhsim06G0078900 Rhododendron simsii HOM05D002457 ORTHO05D005750 4.7e-14 82.8 103 44.7
C06p52240 Brassica napus HOM05D002457 ORTHO05D005750 6.2e-14 82.4 116 41.4
THA.LOC104810709 Tarenaya hassleriana HOM05D002457 ORTHO05D005750 6.2e-14 82.4 77 53.2
AL2G38630 Arabidopsis lyrata HOM05D002457 ORTHO05D005750 8.1e-14 82.0 125 39.2
Ah.05g169750 Amaranthus hybridus HOM05D002457 ORTHO05D005750 1.1e-13 81.6 82 50.0
BolC6t40246H Brassica oleracea HOM05D002457 ORTHO05D005750 1.1e-13 81.6 116 41.4
Gorai.009G234900 Gossypium raimondii HOM05D002457 ORTHO05D005750 1.1e-13 81.6 122 40.2
Cpa.g.sc36.164 Carica papaya HOM05D002457 ORTHO05D005750 1.8e-13 80.9 110 43.6
Gohir.D05G227200 Gossypium hirsutum HOM05D002457 ORTHO05D005750 1.8e-13 80.9 122 40.2
HanXRQChr09g0250381 Helianthus annuus HOM05D002457 ORTHO05D005750 1.8e-13 80.9 107 42.1
Lsat_1_v5_gn_9_72780 Lactuca sativa HOM05D002457 ORTHO05D005750 1.8e-13 80.9 107 41.1
Cc10_g06810 Coffea canephora HOM05D002457 ORTHO05D005750 2.3e-13 80.5 99 47.5
Hund26976 Selenicereus undatus HOM05D002457 ORTHO05D005750 2.3e-13 80.5 98 44.9
Actinidia10339 Actinidia chinensis HOM05D002457 ORTHO05D005750 3.1e-13 80.1 135 37.0
Aa31LG4G8280 Aethionema arabicum HOM05D002457 ORTHO05D005750 3.1e-13 80.1 145 35.2
ECA232G3235 Erigeron canadensis HOM05D002457 ORTHO05D005750 3.1e-13 80.1 108 44.4
AT1G78280 Arabidopsis thaliana HOM05D002457 ORTHO05D005750 4.0e-13 79.7 110 41.8
DCAR_019216 Daucus carota HOM05D002457 ORTHO05D005750 6.8e-13 79.0 103 45.6
SalBow8G1618 Salvia bowleyana HOM05D002457 ORTHO05D005750 6.8e-13 79.0 134 39.6
CSS0003030 Camellia sinensis var. sinensis HOM05D002457 ORTHO05D005750 8.9e-13 78.6 107 43.0
Eucgr.F00367 Eucalyptus grandis HOM05D002457 ORTHO05D005750 1.2e-12 78.2 122 41.8
Peaxi162Scf00030g01716 Petunia axillaris HOM05D002457 ORTHO05D005750 2.6e-12 77.0 107 43.0
Dinv44796 Davidia involucrata HOM05D002457 ORTHO05D005750 2.2e-11 73.9 68 58.8
CDE03G0287 Ceratophyllum demersum HOM05D002457 ORTHO05D005750 2.9e-11 73.6 103 42.7
Sc23g0000320 Simmondsia chinensis HOM05D002457 ORTHO05D005750 3.7e-11 73.2 101 42.6
BcaC03g15804 Brassica carinata HOM05D002457 ORTHO05D005750 8.3e-11 72.0 87 42.5
PGR042G2032 Punica granatum HOM05D002457 ORTHO05D005750 1.1e-10 71.6 102 41.2
BolC2t09568H Brassica oleracea HOM05D002457 ORTHO05D005750 4.6e-09 66.2 110 38.2
Zm00001eb018970 Zea mays HOM05D002457 ORTHO05D005750 3.9e-08 63.2 74 40.5
Os03g0389900 Oryza sativa ssp. japonica HOM05D002457 ORTHO05D005750 5.1e-08 62.8 74 39.2
HPP92_011163 Vanilla planifolia HOM05D002457 ORTHO05D005750 4.7e-06 56.2 111 32.4
HPP92_011193 Vanilla planifolia HOM05D002457 ORTHO05D005750 4.7e-06 56.2 111 32.4


User provided reference genes

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