Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0251G0145 Vigna mungo HOM05D005317 ORTHO05D005146 1.3e-99 366.3 174 100.0
Phvul.003G233000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 2.0e-84 315.8 177 85.9
Glyma.05G108400 Glycine max HOM05D005317 ORTHO05D005146 1.1e-71 273.5 183 79.8
Glyma.17G158600 Glycine max HOM05D005317 ORTHO05D005146 1.2e-65 253.4 183 75.4
Medtr4g097480 Medicago truncatula HOM05D005317 ORTHO05D005146 3.4e-52 208.8 181 63.0
Lj4g0026806 Lotus japonicus HOM05D005317 ORTHO05D005146 8.5e-51 204.1 184 59.8
TPR.G3735 Trifolium pratense HOM05D005317 ORTHO05D005146 8.8e-48 194.1 184 59.2
Psat0ss26165g0240 Pisum sativum HOM05D005317 ORTHO05D005146 3.3e-47 192.2 183 57.4
Lalb_Chr09g0335521 Lupinus albus HOM05D005317 ORTHO05D005146 5.7e-39 164.9 171 53.2
QL06p038960 Quercus lobata HOM05D005317 ORTHO05D005146 4.4e-31 138.7 160 49.4
Potri.007G007000 Populus trichocarpa HOM05D005317 ORTHO05D005146 3.1e-29 132.5 163 48.5
Ciclev10026641m.g Citrus clementina HOM05D005317 ORTHO05D005146 1.6e-28 130.2 167 46.7
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.0e-27 127.5 142 49.3
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 5.5e-26 121.7 155 44.5
Sabra07G0005300 Salix brachista HOM05D005317 ORTHO05D005146 7.2e-26 121.3 165 47.9
Manes.13G109200 Manihot esculenta HOM05D005317 ORTHO05D005146 1.6e-25 120.2 164 43.9
CiPaw.01G002200 Carya illinoinensis HOM05D005317 ORTHO05D005146 2.1e-25 119.8 175 46.3
Atru.chr3.1057 Acer truncatum HOM05D005317 ORTHO05D005146 3.6e-25 119.0 172 43.6
Haze_15027 Corylus avellana HOM05D005317 ORTHO05D005146 1.8e-24 116.7 158 44.3
Thecc.01G076000 Theobroma cacao HOM05D005317 ORTHO05D005146 2.3e-24 116.3 156 46.8
Prupe.6G217200 Prunus persica HOM05D005317 ORTHO05D005146 6.8e-24 114.8 170 45.3
Cfa004386 Carpinus fangiana HOM05D005317 ORTHO05D005146 1.7e-22 110.2 155 42.6
RcHm_v2.0_Chr2g0108721 Rosa chinensis HOM05D005317 ORTHO05D005146 6.3e-22 108.2 175 41.7
CSS0048752 Camellia sinensis var. sinensis HOM05D005317 ORTHO05D005146 8.3e-22 107.8 167 40.7
Dinv23042 Davidia involucrata HOM05D005317 ORTHO05D005146 1.1e-21 107.5 138 42.0
Gohir.D12G076800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.1e-21 105.9 157 40.8
Gorai.008G085600 Gossypium raimondii HOM05D005317 ORTHO05D005146 3.1e-21 105.9 157 40.8
Hma1.2p1_1139F.1_g260880 Hydrangea macrophylla HOM05D005317 ORTHO05D005146 5.4e-21 105.1 157 43.9
Oeu021452.1 Olea europaea HOM05D005317 ORTHO05D005146 5.4e-21 105.1 153 43.1
COL.COLO4_28461 Corchorus olitorius HOM05D005317 ORTHO05D005146 9.2e-21 104.4 152 40.1
Duzib187G1956 Durio zibethinus HOM05D005317 ORTHO05D005146 1.6e-20 103.6 162 42.0
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.6e-20 103.6 148 43.2
FAN23G2069 Fragaria x ananassa HOM05D005317 ORTHO05D005146 4.5e-20 102.1 176 38.1
FAN28G2997 Fragaria x ananassa HOM05D005317 ORTHO05D005146 7.8e-20 101.3 174 40.2
FvH4_1g18210 Fragaria vesca HOM05D005317 ORTHO05D005146 1.0e-19 100.9 177 39.5
Gohir.A12G080100 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.7e-19 100.1 157 40.1
FAN19G1325 Fragaria x ananassa HOM05D005317 ORTHO05D005146 2.3e-19 99.8 177 39.0
FAN26G0581 Fragaria x ananassa HOM05D005317 ORTHO05D005146 2.3e-19 99.8 174 39.7
Oeu014288.1 Olea europaea HOM05D005317 ORTHO05D005146 2.9e-19 99.4 143 42.0
COL.COLO4_11612 Corchorus olitorius HOM05D005317 ORTHO05D005146 3.8e-19 99.0 170 43.5
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 1.1e-18 97.4 161 39.1
MSTRG.23654 Avicennia marina HOM05D005317 ORTHO05D005146 1.5e-18 97.1 156 39.7
Gohir.A02G149800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.9e-18 96.7 162 41.4
Nn5g30662 Nelumbo nucifera HOM05D005317 ORTHO05D005146 3.3e-18 95.9 148 41.2
Oeu047228.1 Olea europaea HOM05D005317 ORTHO05D005146 3.3e-18 95.9 166 38.6
Thecc.08G084700 Theobroma cacao HOM05D005317 ORTHO05D005146 3.3e-18 95.9 151 37.7
Oeu053645.1 Olea europaea HOM05D005317 ORTHO05D005146 5.6e-18 95.1 172 34.3
Eucgr.H02331 Eucalyptus grandis HOM05D005317 ORTHO05D005146 9.5e-18 94.4 160 39.4
Actinidia29632 Actinidia chinensis HOM05D005317 ORTHO05D005146 3.6e-17 92.4 121 43.0
SalBow3G0220 Salvia bowleyana HOM05D005317 ORTHO05D005146 1.8e-16 90.1 154 40.3
Dinv26957 Davidia involucrata HOM05D005317 ORTHO05D005146 2.3e-16 89.7 122 45.9
Sed0021979 Sechium edule HOM05D005317 ORTHO05D005146 2.3e-16 89.7 144 44.4
VMungo0647G1960 Vigna mungo HOM05D005317 ORTHO05D005146 4.0e-16 89.0 149 36.9
SalBow4G3082 Salvia bowleyana HOM05D005317 ORTHO05D005146 6.8e-16 88.2 155 38.7
Rhsim07G0217500 Rhododendron simsii HOM05D005317 ORTHO05D005146 8.9e-16 87.8 164 36.6
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 1.2e-15 87.4 155 38.7
Aqoxy6G02455 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 1.5e-15 87.0 149 38.3
Medtr1g017500 Medicago truncatula HOM05D005317 ORTHO05D005146 2.0e-15 86.7 147 38.8
SGA_v2.0_scaffold15G07499 Striga asiatica HOM05D005317 ORTHO05D005146 2.0e-15 86.7 151 38.4
GSVIVG01009301001 Vitis vinifera HOM05D005317 ORTHO05D005146 2.0e-15 86.7 141 38.3
Gohir.D03G030600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.6e-15 86.3 162 38.3
Actinidia11964 Actinidia chinensis HOM05D031334 ORTHO05D026410 3.4e-15 85.9 148 41.2
Gorai.003G032200 Gossypium raimondii HOM05D005317 ORTHO05D005146 7.5e-15 84.7 167 37.7
Phvul.001G030800 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 7.5e-15 84.7 149 36.2
DCAR_020064 Daucus carota HOM05D005317 ORTHO05D005146 1.7e-14 83.6 147 33.3
Psat6g017280 Pisum sativum HOM05D005317 ORTHO05D005146 1.7e-14 83.6 141 40.4
Actinidia16411 Actinidia chinensis HOM05D005317 ORTHO05D005146 2.2e-14 83.2 145 40.0
Haze_22391 Corylus avellana HOM05D005317 ORTHO05D005146 2.2e-14 83.2 168 32.7
Potri.014G013000 Populus trichocarpa HOM05D005317 ORTHO05D005146 2.2e-14 83.2 157 36.9
Actinidia10221 Actinidia chinensis HOM05D005317 ORTHO05D005146 2.9e-14 82.8 105 42.9
TPR.G13020 Trifolium pratense HOM05D005317 ORTHO05D005146 2.4e-13 79.7 146 32.9
Gohir.A06G025600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.2e-13 79.3 149 40.9
Gohir.A11G212400 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.2e-13 79.3 154 34.4
Glyma.06G048700 Glycine max HOM05D005317 ORTHO05D005146 5.4e-13 78.6 157 33.8
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 9.2e-13 77.8 149 40.9
Sabra14G0007800 Salix brachista HOM05D005317 ORTHO05D005146 1.2e-12 77.4 146 36.3
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.0e-12 76.6 149 40.3
Cfa013739 Carpinus fangiana HOM05D005317 ORTHO05D005146 3.5e-12 75.9 158 33.5
DCAR_009867 Daucus carota HOM05D005317 ORTHO05D005146 3.5e-12 75.9 161 31.1
Gorai.007G226200 Gossypium raimondii HOM05D005317 ORTHO05D005146 4.6e-12 75.5 150 36.7
ClCG01G017790 Citrullus lanatus HOM05D005317 ORTHO05D005146 6.0e-12 75.1 149 38.9
Lalb_Chr24g0399511 Lupinus albus HOM05D005317 ORTHO05D005146 6.0e-12 75.1 135 36.3
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 1.0e-11 74.3 114 43.9
Gohir.A01G123600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.7e-11 73.6 146 30.1
Migut.H00325 Erythranthe guttata HOM05D005317 ORTHO05D005146 3.0e-11 72.8 181 33.7
Prupe.1G419300 Prunus persica HOM05D005317 ORTHO05D005146 3.9e-11 72.4 150 32.7
ECA246G5098 Erigeron canadensis HOM05D005317 ORTHO05D005146 5.0e-11 72.0 142 38.7
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 5.0e-11 72.0 158 33.5
TPR.G13134 Trifolium pratense HOM05D014755 ORTHO05D005146 5.0e-11 72.0 130 34.6
VMungo1309G2313 Vigna mungo HOM05D005317 ORTHO05D005146 5.0e-11 72.0 145 33.8
Lsat_1_v5_gn_3_86260 Lactuca sativa HOM05D005317 ORTHO05D005146 6.6e-11 71.6 139 38.8
Sc24g0002340 Simmondsia chinensis HOM05D005317 ORTHO05D005146 6.6e-11 71.6 136 33.1
Migut.C00473 Erythranthe guttata HOM05D005317 ORTHO05D005146 1.5e-10 70.5 148 35.1
Gohir.D01G111432 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.9e-10 70.1 146 30.1
Gorai.002G136200 Gossypium raimondii HOM05D005317 ORTHO05D005146 3.3e-10 69.3 146 29.5
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 3.3e-10 69.3 146 34.9
Lj5g0002019 Lotus japonicus HOM05D005317 ORTHO05D005146 4.3e-10 68.9 152 33.6
Gohir.D05G215300 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.6e-10 68.6 147 29.9
Manes.05G183600 Manihot esculenta HOM05D005317 ORTHO05D005146 5.6e-10 68.6 152 30.9
Aqoxy6G02509 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 7.3e-10 68.2 86 46.5
MBI16_g41241_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 7.3e-10 68.2 146 34.2
Atru.chr13.870 Acer truncatum HOM05D005317 ORTHO05D005146 1.2e-09 67.4 139 37.4
CiPaw.08G052300 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.6e-09 67.0 140 36.4
ClCG05G026550 Citrullus lanatus HOM05D029900 ORTHO05D005146 1.6e-09 67.0 139 31.7
Rhsim08G0090500 Rhododendron simsii HOM05D005317 ORTHO05D005146 2.8e-09 66.2 167 35.3
Glyma.06G048800 Glycine max HOM05D014755 ORTHO05D005146 4.7e-09 65.5 136 33.8
Glyma.14G089084 Glycine max HOM05D005317 ORTHO05D005146 4.7e-09 65.5 142 33.8
Thecc.08G084600 Theobroma cacao HOM05D005317 ORTHO05D005146 6.2e-09 65.1 113 34.5
Glyma.17G232900 Glycine max HOM05D005317 ORTHO05D005146 8.0e-09 64.7 144 33.3
Ciclev10027255m.g Citrus clementina HOM05D005317 ORTHO05D005146 1.1e-08 64.3 111 35.1
Cpa.g.c31093.6 Carica papaya HOM05D005317 ORTHO05D005146 1.8e-08 63.5 152 32.2
ATR0739G163 Amborella trichopoda HOM05D005317 ORTHO05D005146 4.0e-08 62.4 165 33.3
Ah.02g129000 Amaranthus hybridus HOM05D005317 ORTHO05D005146 5.2e-08 62.0 89 42.7
CDE07G0499 Ceratophyllum demersum HOM05D000271 ORTHO05D009467 5.2e-08 62.0 147 31.3
ECA232G3441 Erigeron canadensis HOM05D005317 ORTHO05D005146 6.8e-08 61.6 153 32.7
Cfa013738 Carpinus fangiana HOM05D005317 ORTHO05D005146 1.2e-07 60.8 140 32.1
MBI16_g06081_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 2.0e-07 60.1 102 36.3
Gorai.002G136100 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.6e-07 59.7 135 31.1
MSTRG.25022 Avicennia marina HOM05D005317 ORTHO05D005146 3.4e-07 59.3 155 30.3
EL10Ac6g13373 Beta vulgaris HOM05D005317 ORTHO05D005146 3.4e-07 59.3 88 37.5
CsaV3_4G035270 Cucumis sativus L. HOM05D029900 ORTHO05D005146 3.4e-07 59.3 106 36.8
CiPaw.07G172100 Carya illinoinensis HOM05D005317 ORTHO05D005146 5.8e-07 58.5 152 30.3
Sc03g0002520 Simmondsia chinensis HOM05D005317 ORTHO05D005146 5.8e-07 58.5 93 36.6
MELO3C016838.2 Cucumis melo HOM05D029900 ORTHO05D005146 7.5e-07 58.2 139 30.2
Gohir.A01G123550 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.3e-06 57.4 135 31.1
Gorai.009G222000 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.3e-06 57.4 142 28.9
Phvul.009G074100 Phaseolus vulgaris HOM05D014755 ORTHO05D012905 1.3e-06 57.4 139 33.8
Gohir.A05G212000 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.2e-06 56.6 149 28.9
SGA_v2.0_scaffold238G43910 Striga asiatica HOM05D005317 ORTHO05D005146 3.7e-06 55.8 150 32.0
CDE04G2604 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 4.9e-06 55.5 154 27.9
Lsat_1_v5_gn_4_159841 Lactuca sativa HOM05D005317 ORTHO05D005146 4.9e-06 55.5 140 35.0
Sed0025721 Sechium edule HOM05D005317 ORTHO05D005146 4.9e-06 55.5 143 39.9
HPP92_026659 Vanilla planifolia HOM05D066124 ORTHO05D051582 8.3e-06 54.7 149 30.9


User provided reference genes

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