Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0044G0003 Vigna mungo HOM05D003430 ORTHO05D004809 1.7e-196 689.1 335 100.0
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 5.2e-81 305.4 167 88.0
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 3.7e-79 299.3 167 86.2
arahy.Tifrunner.gnm1.ann1.13LUN9 Arachis hypogaea HOM05D003430 ORTHO05D004809 6.4e-79 298.5 167 86.2
arahy.Tifrunner.gnm1.ann1.2J3QCS Arachis hypogaea HOM05D003430 ORTHO05D004809 6.4e-79 298.5 167 86.2
arahy.Tifrunner.gnm1.ann1.4C4WEU Arachis hypogaea HOM05D003430 ORTHO05D004809 6.4e-79 298.5 167 86.2
Lalb_Chr00c39g0409061 Lupinus albus HOM05D003430 ORTHO05D004809 6.4e-79 298.5 167 86.8
Lalb_Chr00c39g0409241 Lupinus albus HOM05D003430 ORTHO05D004809 6.4e-79 298.5 167 86.8
Lalb_Chr00c51g0413151 Lupinus albus HOM05D003430 ORTHO05D004809 6.4e-79 298.5 167 86.8
Lj2C1222T70 Lonicera japonica HOM05D003430 ORTHO05D004809 1.1e-78 297.7 165 87.3
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 2.4e-78 296.6 149 94.0
arahy.Tifrunner.gnm1.ann1.Y9E1XU Arachis hypogaea HOM05D003430 ORTHO05D004809 3.2e-78 296.2 149 94.0
arahy.Tifrunner.gnm1.ann1.ZQA7LX Arachis hypogaea HOM05D003430 ORTHO05D004809 3.2e-78 296.2 149 94.0
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 3.2e-78 296.2 170 85.9
SabraMtG0000300 Salix brachista HOM05D003430 ORTHO05D004809 9.2e-78 294.7 167 86.2
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 7.8e-77 291.6 143 95.8
Medtr0024s0150 Medicago truncatula HOM05D003430 ORTHO05D004809 1.3e-76 290.8 161 87.0
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 1.7e-76 290.4 163 86.5
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 1.7e-76 290.4 149 92.6
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 5.0e-76 288.9 163 86.5
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 3.3e-75 286.2 167 83.2
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 4.3e-75 285.8 165 84.2
SHI29635 Sapria himalayana HOM05D003430 ORTHO05D004809 7.3e-75 285.0 167 84.4
Sc11g0004440 Simmondsia chinensis HOM05D003430 ORTHO05D004809 9.5e-75 284.6 166 83.7
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 2.1e-74 283.5 167 83.2
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.6e-74 282.7 172 79.7
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.6e-74 282.7 172 79.7
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 4.7e-74 282.3 167 82.6
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 6.2e-74 282.0 149 90.6
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 8.1e-74 281.6 163 84.7
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 1.8e-73 280.4 165 83.6
Sp3g25660 Schrenkiella parvula HOM05D003430 ORTHO05D004809 8.9e-73 278.1 149 89.3
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 1.2e-72 277.7 150 86.0
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 2.0e-72 276.9 167 79.6
ATR0559G258 Amborella trichopoda HOM05D003430 ORTHO05D004809 5.8e-72 275.4 166 81.9
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 7.5e-72 275.0 159 83.0
Cpa.g.c41010 Carica papaya HOM05D003430 ORTHO05D004809 9.9e-72 274.6 148 89.9
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 1.7e-71 273.9 165 81.8
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 1.7e-71 273.9 165 81.8
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 1.7e-71 273.9 165 81.8
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 1.7e-71 273.9 165 81.8
CDE02G3943 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 1.7e-71 273.9 154 85.1
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 4.9e-71 272.3 171 77.2
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 8.3e-71 271.6 163 82.2
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 2.4e-70 270.0 160 80.6
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 7.8e-69 265.0 166 78.3
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 7.8e-69 265.0 166 77.1
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.0e-68 264.6 166 78.3
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.0e-68 264.6 166 78.3
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 8.6e-68 261.5 167 76.0
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 1.9e-67 260.4 172 75.0
Zm00001eb435490 Zea mays HOM05D003430 ORTHO05D004809 1.6e-66 257.3 167 77.8
Zm00001eb436080 Zea mays HOM05D003430 ORTHO05D004809 1.6e-66 257.3 167 77.8
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 3.6e-66 256.1 161 77.6
Lj2C1222T53 Lonicera japonica HOM05D003430 ORTHO05D004809 1.5e-64 250.8 152 81.6
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.9e-63 246.5 167 73.7
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 5.4e-62 242.3 132 84.8
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 9.2e-62 241.5 166 70.5
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 6.0e-61 238.8 126 88.9
Lj6g0002337 Lotus japonicus HOM05D003430 ORTHO05D004809 9.6e-59 231.5 155 77.4
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 1.4e-57 227.6 165 70.9
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 1.8e-57 227.3 182 67.6
unitig_87.g27923 Utricularia gibba HOM05D003430 ORTHO05D004809 3.8e-55 219.5 141 77.3
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 6.4e-55 218.8 141 75.9
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 9.3e-54 214.9 115 87.0
Solyc10g076630.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 6.6e-52 208.8 113 84.1
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 1.5e-40 171.0 167 56.9
Pp3c4_28970 Physcomitrium patens HOM05D003430 ORTHO05D004809 5.8e-40 169.1 182 56.0
Pp3c4_28972 Physcomitrium patens HOM05D003430 ORTHO05D004809 5.8e-40 169.1 182 56.0
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 9.9e-40 168.3 92 83.7
Aqoxy23s002 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 1.2e-37 161.4 106 77.4
Peaxi162Scf00456g00036 Petunia axillaris HOM05D003430 ORTHO05D004809 4.6e-37 159.5 103 76.7
Lalb_Chr21g0308991 Lupinus albus HOM05D002109 ORTHO05D002149 4.2e-30 136.3 73 90.4
SHI03773 Sapria himalayana HOM05D003430 ORTHO05D004809 4.1e-25 119.8 90 63.3
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 5.5e-22 109.4 67 79.1
SHI20518 Sapria himalayana HOM05D003430 ORTHO05D004809 1.5e-19 101.3 68 72.1
Solyc03g013370.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.4e-17 94.7 54 79.6
SHI25675 Sapria himalayana HOM05D003430 ORTHO05D004809 2.2e-15 87.4 51 74.5
SHI32119 Sapria himalayana HOM05D003430 ORTHO05D004809 2.9e-15 87.0 64 68.8
Solyc05g025700.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.9e-15 87.0 95 53.7
SGA_v2.0_scaffold178G39492 Striga asiatica HOM05D003430 ORTHO05D004809 6.7e-12 75.9 53 64.2
SHI33657 Sapria himalayana HOM05D003430 ORTHO05D004809 6.3e-10 69.3 72 52.8
Prupe.5G026600 Prunus persica HOM05D003430 ORTHO05D004809 8.2e-10 68.9 68 57.4
Nitab4.5_0000172g1190 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.3e-09 66.2 40 82.5
SalBow1G2589 Salvia bowleyana HOM05D003430 ORTHO05D004809 7.0e-09 65.9 35 85.7
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 5.9e-08 62.8 32 87.5


User provided reference genes

Program Settings