Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 5.8e-209 730.7 384 100.0
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 4.0e-93 345.9 386 54.9
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 2.3e-88 330.1 397 52.9
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.3e-83 314.3 388 50.8
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.8e-78 296.6 399 49.4
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 8.4e-75 285.0 390 47.7
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 2.4e-74 283.5 397 46.1
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 1.2e-73 281.2 397 46.3
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 6.0e-73 278.9 395 47.1
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 6.6e-72 275.4 399 45.9
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 9.6e-71 271.6 395 46.8
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 3.6e-70 269.6 375 47.7
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 4.7e-70 269.2 397 45.8
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 4.7e-70 269.2 417 44.4
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 6.2e-70 268.9 372 46.2
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 6.2e-70 268.9 431 42.9
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 8.1e-70 268.5 383 46.0
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.4e-69 267.7 375 45.9
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 3.4e-68 263.1 402 44.8
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 3.4e-68 263.1 374 45.2
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 3.2e-66 256.5 380 46.6
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 7.1e-66 255.4 395 44.6
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 9.3e-66 255.0 375 44.8
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 3.5e-65 253.1 380 45.5
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 9.6e-63 245.0 383 42.3
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 1.6e-62 244.2 378 42.9
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 4.0e-61 239.6 382 43.2
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 4.5e-60 236.1 384 42.4
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 1.3e-59 234.6 381 42.5
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 1.7e-59 234.2 380 44.2
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 2.2e-59 233.8 383 41.0
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 3.8e-59 233.0 372 42.7
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 6.4e-59 232.3 379 43.5
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 5.4e-58 229.2 380 41.8
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 7.1e-58 228.8 369 42.3
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 1.3e-56 224.6 380 41.6
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 3.9e-56 223.0 380 41.3
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 1.9e-55 220.7 405 39.5
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 4.3e-55 219.5 385 41.0
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 1.2e-52 211.5 366 39.6
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 1.7e-51 207.6 416 38.0
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 6.4e-51 205.7 412 37.9
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.9e-50 204.1 386 37.6
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 2.7e-49 200.3 398 37.2
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 4.6e-49 199.5 403 37.0
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 6.0e-49 199.1 412 37.4
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 6.0e-49 199.1 412 37.4
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.0e-48 198.4 412 37.1
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.0e-48 198.4 403 36.7
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 1.3e-48 198.0 384 37.2
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.0e-48 196.8 403 36.7
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 3.0e-48 196.8 417 36.7
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 3.9e-48 196.4 391 36.6
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 6.7e-48 195.7 419 36.3
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 6.7e-48 195.7 411 36.3
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 6.7e-48 195.7 415 36.1
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 1.9e-47 194.1 411 35.8
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 1.9e-47 194.1 413 35.8
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 2.5e-47 193.7 411 35.8
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 3.3e-47 193.4 416 36.8
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 5.6e-47 192.6 394 38.1
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 7.4e-47 192.2 414 35.5
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 9.6e-47 191.8 415 35.7
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 9.6e-47 191.8 416 36.3
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 1.3e-46 191.4 414 35.3
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 1.6e-46 191.0 410 35.4
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 2.8e-46 190.3 414 34.5
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 6.2e-46 189.1 383 36.0
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 3.1e-45 186.8 372 36.8
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 4.0e-45 186.4 411 34.5
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 5.3e-45 186.0 362 36.5
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 9.0e-45 185.3 414 34.3
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 9.0e-45 185.3 413 34.9
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 1.2e-44 184.9 415 34.7
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 1.5e-44 184.5 402 34.6
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 1.5e-44 184.5 418 34.0
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 5.8e-44 182.6 411 35.0
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 5.8e-44 182.6 411 35.5
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 7.6e-44 182.2 404 35.1
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 1.0e-43 181.8 414 34.3
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 1.3e-43 181.4 425 34.1
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 1.3e-43 181.4 412 34.0
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 1.7e-43 181.0 384 34.4
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 1.7e-43 181.0 412 33.3
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 2.9e-43 180.3 375 34.7
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 2.9e-43 180.3 412 34.7
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 8.4e-43 178.7 384 34.1
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 1.1e-42 178.3 404 35.4
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 1.1e-42 178.3 369 34.4
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.4e-42 177.9 404 35.4
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 1.4e-42 177.9 385 33.8
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 1.9e-42 177.6 375 36.0
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 2.5e-42 177.2 414 33.1
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 9.3e-42 175.3 301 39.9
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 9.3e-42 175.3 412 34.2
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 9.3e-42 175.3 412 34.2
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 9.3e-42 175.3 412 34.2
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 9.3e-42 175.3 414 33.6
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 1.2e-41 174.9 395 34.4
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 3.5e-41 173.3 427 33.5
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 3.5e-41 173.3 412 34.2
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 3.5e-41 173.3 412 32.8
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 4.6e-41 172.9 412 34.2
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 7.9e-41 172.2 421 33.3
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 1.0e-40 171.8 426 32.6
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 1.8e-40 171.0 456 32.5
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 6.7e-40 169.1 421 33.0
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 8.7e-40 168.7 411 31.9
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 4.3e-39 166.4 172 55.8
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 7.4e-39 165.6 429 34.3
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 1.3e-38 164.9 413 32.4
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 2.1e-38 164.1 415 31.3
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 3.7e-38 163.3 177 53.1
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 4.8e-38 162.9 422 29.6
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 1.8e-37 161.0 358 36.0
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 6.9e-37 159.1 343 36.7
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 1.5e-36 157.9 389 34.2
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 2.0e-36 157.5 378 34.9
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 7.6e-36 155.6 385 34.5
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 2.9e-35 153.7 380 32.1
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 2.9e-35 153.7 455 29.9
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 3.8e-35 153.3 229 45.0
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 6.5e-35 152.5 345 35.4
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 1.9e-34 151.0 412 30.6
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 1.1e-31 141.7 316 32.6
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 4.1e-29 133.3 130 57.7
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.3e-27 128.3 258 37.6
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.4e-26 124.8 367 31.3
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 1.4e-26 124.8 319 28.8
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 2.6e-23 114.0 181 40.9
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 4.4e-23 113.2 124 54.8
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.8e-21 107.8 175 38.9
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 2.4e-21 107.5 201 40.3
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 1.5e-20 104.8 362 26.0
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 7.7e-20 102.4 190 40.0
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 1.1e-18 98.6 96 55.2
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 5.5e-18 96.3 96 54.2
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 1.6e-17 94.7 238 31.5
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 6.1e-17 92.8 174 36.2
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 8.8e-16 89.0 264 30.3
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.3e-15 87.0 251 30.7
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 5.7e-15 86.3 120 40.0
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 7.4e-15 85.9 95 50.5
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 1.7e-14 84.7 245 30.2
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 1.2e-12 78.6 277 30.0
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 1.2e-12 78.6 136 36.8
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 7.7e-12 75.9 74 56.8
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 2.2e-11 74.3 203 33.0
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.5e-10 71.6 81 48.1
AL6G50230 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.9e-10 71.2 48 72.9
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 1.0e-08 65.5 288 25.7
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 1.8e-08 64.7 135 37.8
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 4.0e-08 63.5 77 46.8
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 6.7e-08 62.8 62 48.4
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 8.8e-08 62.4 74 47.3
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 2.0e-07 61.2 96 35.4
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 4.4e-07 60.1 58 48.3
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 5.7e-07 59.7 96 35.4
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 2.8e-06 57.4 81 40.7
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 4.8e-06 56.6 84 41.7
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 4.8e-06 56.6 74 45.9
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 8.2e-06 55.8 61 47.5


User provided reference genes

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