Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 6.6e-102 374.0 184 100.0
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 3.5e-79 298.5 176 85.2
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 2.1e-71 272.7 178 78.7
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 3.5e-71 271.9 178 78.1
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 6.0e-71 271.2 186 77.4
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 1.0e-70 270.4 179 77.1
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 3.0e-70 268.9 178 77.5
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 3.0e-70 268.9 178 77.5
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 3.0e-70 268.9 178 77.5
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 8.6e-70 267.3 186 75.3
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 2.1e-68 262.7 187 74.9
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 3.6e-68 261.9 177 77.4
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 1.8e-67 259.6 188 71.3
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 3.1e-67 258.8 188 71.3
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 6.8e-67 257.7 172 75.6
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 3.2e-64 248.8 186 76.3
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.6e-63 246.5 185 71.4
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 2.1e-63 246.1 187 69.5
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 1.7e-62 243.0 195 71.3
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 2.3e-62 242.7 190 68.9
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 3.3e-61 238.8 182 69.2
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 3.3e-61 238.8 182 69.2
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 9.6e-61 237.3 186 66.1
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 9.6e-61 237.3 187 66.8
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 2.8e-60 235.7 187 67.4
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 2.8e-60 235.7 187 66.3
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 6.2e-60 234.6 187 66.8
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 1.8e-59 233.0 181 68.0
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 1.8e-59 233.0 181 68.0
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 5.8e-58 228.0 178 66.9
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 6.4e-57 224.6 144 83.3
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 2.7e-47 192.6 138 75.4
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 7.6e-42 174.5 172 56.4
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 2.6e-34 149.4 164 53.0
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 2.2e-33 146.4 190 48.4
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 2.2e-33 146.4 184 52.2
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 3.8e-33 145.6 174 49.4
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 5.0e-33 145.2 195 48.2
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.9e-32 143.3 190 47.9
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.5e-32 142.9 191 47.6
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.6e-31 140.2 188 47.3
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.6e-31 140.2 187 47.6
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 3.5e-31 139.0 180 48.9
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 1.0e-30 137.5 173 48.6
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 1.3e-30 137.1 177 45.2
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 2.3e-30 136.3 175 48.6
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 5.1e-30 135.2 184 45.1
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 6.7e-30 134.8 176 45.5
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 6.7e-30 134.8 186 43.0
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.7e-30 134.4 177 44.6
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 1.5e-29 133.7 198 42.4
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 7.4e-29 131.3 201 43.8
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 7.4e-29 131.3 198 40.9
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 9.7e-29 131.0 182 44.0
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 1.3e-28 130.6 167 46.7
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 1.3e-28 130.6 182 45.6
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 1.3e-28 130.6 186 43.5
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 1.6e-28 130.2 168 47.6
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.6e-28 130.2 182 46.7
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 1.4e-27 127.1 181 43.6
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.4e-27 127.1 177 45.8
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 1.4e-27 127.1 189 43.4
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 2.4e-27 126.3 178 46.1
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 2.4e-27 126.3 190 42.1
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.4e-27 126.3 187 42.8
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.3e-27 125.2 177 45.2
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 5.3e-27 125.2 188 42.6
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 9.0e-27 124.4 174 43.7
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 9.0e-27 124.4 191 37.7
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 9.0e-27 124.4 188 41.5
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 9.0e-27 124.4 183 43.2
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 1.2e-26 124.0 178 43.8
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.5e-26 123.6 179 44.1
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 2.0e-26 123.2 174 43.7
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 2.0e-26 123.2 181 42.5
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 2.6e-26 122.9 189 39.7
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 4.5e-26 122.1 185 43.8
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 4.5e-26 122.1 177 45.2
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 7.7e-26 121.3 177 45.2
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 7.7e-26 121.3 177 44.6
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.0e-25 120.9 173 46.8
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 1.0e-25 120.9 189 43.4
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.3e-25 120.6 196 40.8
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 1.3e-25 120.6 174 46.6
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 1.7e-25 120.2 176 44.9
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 1.7e-25 120.2 165 43.6
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 2.9e-25 119.4 202 38.1
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 2.9e-25 119.4 171 46.2
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 3.8e-25 119.0 191 41.4
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 5.0e-25 118.6 181 42.5
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 6.5e-25 118.2 167 44.9
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 6.5e-25 118.2 186 40.9
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 8.5e-25 117.9 174 44.8
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 8.5e-25 117.9 176 46.6
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 8.5e-25 117.9 190 38.4
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.1e-24 117.5 179 44.7
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 1.1e-24 117.5 176 45.5
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 1.4e-24 117.1 167 43.1
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 2.5e-24 116.3 171 40.9
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 2.5e-24 116.3 172 43.6
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 3.2e-24 115.9 189 40.2
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 3.2e-24 115.9 176 42.0
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 4.2e-24 115.5 185 43.2
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 4.2e-24 115.5 178 40.4
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.5e-24 115.2 175 43.4
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 7.2e-24 114.8 183 42.1
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.2e-23 114.0 182 42.9
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 1.2e-23 114.0 182 41.2
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 1.2e-23 114.0 159 44.7
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 1.2e-23 114.0 171 42.7
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.6e-23 113.6 195 39.5
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 2.7e-23 112.8 185 43.8
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 2.7e-23 112.8 186 37.6
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 2.7e-23 112.8 179 43.0
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 2.7e-23 112.8 187 40.1
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 3.6e-23 112.5 188 41.5
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 6.1e-23 111.7 189 38.1
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 2.3e-22 109.8 185 41.1
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 3.0e-22 109.4 194 38.7
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.9e-22 109.0 182 41.8
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 3.9e-22 109.0 195 39.5
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 3.9e-22 109.0 178 44.4
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.7e-22 108.2 180 39.4
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 8.8e-22 107.8 170 38.8
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 8.8e-22 107.8 196 39.8
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 8.8e-22 107.8 196 39.8
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 8.8e-22 107.8 175 39.4
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 1.1e-21 107.5 166 39.8
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 2.5e-21 106.3 161 42.9
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 3.3e-21 105.9 195 39.5
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 3.3e-21 105.9 177 42.4
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 5.7e-21 105.1 190 37.4
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 7.4e-21 104.8 195 36.9
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.4e-21 104.8 165 41.2
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 7.4e-21 104.8 187 40.1
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-20 104.0 160 43.1
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 3.7e-20 102.4 168 44.6
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.8e-20 102.1 165 41.2
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 8.2e-20 101.3 156 38.5
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.4e-19 99.8 177 37.3
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 4.1e-19 99.0 175 37.7
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 9.1e-19 97.8 157 40.8
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 1.2e-18 97.4 215 35.3
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 5.9e-18 95.1 221 33.9
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-17 94.0 139 45.3
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 1.3e-17 94.0 168 37.5
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.0e-17 92.0 156 40.4
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 1.1e-16 90.9 174 38.5
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.4e-16 90.5 181 36.5
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 3.2e-16 89.4 152 42.8
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 7.9e-15 84.7 163 38.7
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 1.4e-14 84.0 126 38.1
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 6.7e-14 81.6 148 35.1
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 8.8e-14 81.3 210 33.8
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 1.1e-13 80.9 167 34.1
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 3.3e-13 79.3 203 33.0
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 4.4e-13 79.0 166 35.5
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.3e-12 77.4 103 43.7
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 2.2e-12 76.6 169 32.5
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 2.8e-12 76.3 162 37.0
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 2.8e-12 76.3 219 30.6
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 3.7e-12 75.9 172 35.5
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 3.5e-10 69.3 199 31.2
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 2.9e-09 66.2 139 32.4
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.0e-09 65.5 102 37.3
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 1.1e-08 64.3 158 31.6
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-08 64.3 93 40.9
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.2e-08 62.8 90 40.0
SEGI_22681 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 5.5e-08 62.0 191 33.0
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.7e-07 59.7 93 38.7
SEGI_22892 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 4.0e-06 55.8 168 30.4
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 6.7e-06 55.1 86 41.9
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 6.7e-06 55.1 103 34.0


User provided reference genes

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