Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10029362m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 7.7e-123 443.7 210 100.0
AL6G47230 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 4.6e-83 311.6 206 74.8
Thhalv10029151m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 1.7e-82 309.7 201 79.1
BraA02t07559Z Brassica rapa HOM05D001286 ORTHO05D000440 2.5e-81 305.8 204 75.0
AT4G12370 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 4.3e-81 305.1 204 73.5
A02p25680 Brassica napus HOM05D001286 ORTHO05D000440 7.3e-81 304.3 204 74.0
CARHR253870 Cardamine hirsuta HOM05D001286 ORTHO05D000440 2.8e-80 302.4 206 73.3
A09p26950 Brassica napus HOM05D001286 ORTHO05D000440 2.0e-78 296.2 206 72.3
BraA09t38265Z Brassica rapa HOM05D001286 ORTHO05D000440 2.0e-78 296.2 206 72.3
Carub.0006s3151 Capsella rubella HOM05D001286 ORTHO05D000440 1.7e-74 283.1 186 74.7
Sp6g05220 Schrenkiella parvula HOM05D001286 ORTHO05D000440 2.3e-74 282.7 207 70.0
BcaB05g23747 Brassica carinata HOM05D001286 ORTHO05D000440 3.2e-52 209.1 142 73.9
CARHR253850 Cardamine hirsuta HOM05D001286 ORTHO05D000440 2.2e-45 186.4 204 48.0
AT4G10660 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 1.6e-43 180.3 210 48.6
AL6G47240 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 2.7e-43 179.5 204 48.0
AT4G00893 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 1.0e-42 177.6 204 46.6
Sp6g05210 Schrenkiella parvula HOM05D001286 ORTHO05D000440 4.8e-40 168.7 204 45.1
AL6G44750 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 4.2e-36 155.6 210 45.2
Carub.0006s3152 Capsella rubella HOM05D001286 ORTHO05D000440 9.3e-36 154.5 204 43.6
CARHR253820 Cardamine hirsuta HOM05D001286 ORTHO05D000440 2.1e-35 153.3 197 43.1
Sp6g05700 Schrenkiella parvula HOM05D001286 ORTHO05D000440 3.5e-35 152.5 188 47.3
CARHR253860 Cardamine hirsuta HOM05D001286 ORTHO05D000440 1.3e-34 150.6 182 45.6
Ciclev10011976m.g Citrus clementina HOM05D001286 ORTHO05D000440 6.7e-34 148.3 203 42.4
Sp6g05180 Schrenkiella parvula HOM05D001286 ORTHO05D000440 1.5e-33 147.1 203 42.9
TPR.G9893 Trifolium pratense HOM05D001286 ORTHO05D000440 1.9e-33 146.7 198 41.4
Medtr1g059840 Medicago truncatula HOM05D001286 ORTHO05D000440 2.5e-33 146.4 182 44.0
Lj5g0005331 Lotus japonicus HOM05D001286 ORTHO05D000440 3.3e-33 146.0 198 41.9
Ca_00899_v3 Cicer arietinum L. HOM05D001286 ORTHO05D000440 5.7e-33 145.2 184 41.8
Glyma.10G073700 Glycine max HOM05D001286 ORTHO05D000440 2.1e-32 143.3 184 42.9
Psat6g080440 Pisum sativum HOM05D001286 ORTHO05D000440 2.1e-32 143.3 184 42.4
arahy.Tifrunner.gnm1.ann1.2MM3YT Arachis hypogaea HOM05D001286 ORTHO05D000440 2.8e-32 142.9 187 43.3
arahy.Tifrunner.gnm1.ann1.4DR6J6 Arachis hypogaea HOM05D001286 ORTHO05D000440 2.8e-32 142.9 187 43.3
Haze_19623 Corylus avellana HOM05D001286 ORTHO05D000440 3.7e-32 142.5 203 41.9
Cfa016618 Carpinus fangiana HOM05D001286 ORTHO05D000440 4.8e-32 142.1 203 42.4
Cpa.g.sc5.10 Carica papaya HOM05D001286 ORTHO05D000440 8.2e-32 141.4 203 40.9
C09p12800 Brassica napus HOM05D001286 ORTHO05D000440 1.1e-31 141.0 192 42.2
BolC9t54170H Brassica oleracea HOM05D001286 ORTHO05D000440 1.1e-31 141.0 192 42.2
QL07p038675 Quercus lobata HOM05D001286 ORTHO05D000440 2.4e-31 139.8 187 43.3
BraA09t36726Z Brassica rapa HOM05D001286 ORTHO05D000440 4.1e-31 139.0 192 41.7
A03p29660 Brassica napus HOM05D001286 ORTHO05D000440 5.3e-31 138.7 192 42.7
BraA03t12160Z Brassica rapa HOM05D001286 ORTHO05D000440 5.3e-31 138.7 192 42.7
Potri.016G079300 Populus trichocarpa HOM05D001286 ORTHO05D000440 6.9e-31 138.3 203 41.4
CiPaw.10G010500 Carya illinoinensis HOM05D001286 ORTHO05D000440 1.2e-30 137.5 187 43.3
Glyma.13G154400 Glycine max HOM05D001286 ORTHO05D000440 1.2e-30 137.5 198 40.9
A03p29650 Brassica napus HOM05D001286 ORTHO05D000440 1.5e-30 137.1 192 42.2
Atru.chr8.1486 Acer truncatum HOM05D001286 ORTHO05D000440 2.0e-30 136.7 189 41.8
Sabra06G0163600 Salix brachista HOM05D001286 ORTHO05D000440 2.0e-30 136.7 203 40.9
Hund03994 Selenicereus undatus HOM05D001286 ORTHO05D000440 2.0e-30 136.7 187 41.7
BraA03t12159Z Brassica rapa HOM05D001286 ORTHO05D000440 2.6e-30 136.3 192 42.2
CSS0048691 Camellia sinensis var. sinensis HOM05D001286 ORTHO05D000440 3.4e-30 136.0 189 41.3
AUR62037031 Chenopodium quinoa HOM05D001286 ORTHO05D000440 4.5e-30 135.6 189 40.7
Potri.006G212600 Populus trichocarpa HOM05D001286 ORTHO05D000440 4.5e-30 135.6 203 40.9
BcaB05g23813 Brassica carinata HOM05D001286 ORTHO05D000440 5.8e-30 135.2 199 43.2
C02p40810 Brassica napus HOM05D001286 ORTHO05D000440 5.8e-30 135.2 80 81.2
Dinv31694 Davidia involucrata HOM05D001286 ORTHO05D000440 5.8e-30 135.2 189 41.8
Manes.08G026100 Manihot esculenta HOM05D001286 ORTHO05D000440 7.6e-30 134.8 189 40.7
Sp4g03050 Schrenkiella parvula HOM05D001286 ORTHO05D000440 7.6e-30 134.8 185 42.7
Sp6g05200 Schrenkiella parvula HOM05D001286 ORTHO05D000440 7.6e-30 134.8 195 41.0
AUR62006191 Chenopodium quinoa HOM05D001286 ORTHO05D000440 1.0e-29 134.4 189 40.7
EL10Ac7g16907 Beta vulgaris HOM05D001286 ORTHO05D000440 1.3e-29 134.0 189 40.7
Glyma.19G194964 Glycine max HOM05D001286 ORTHO05D000440 1.3e-29 134.0 189 41.8
MD14G1023800 Malus domestica HOM05D001286 ORTHO05D000440 1.3e-29 134.0 203 39.4
Prupe.7G109000 Prunus persica HOM05D001286 ORTHO05D000440 1.7e-29 133.7 203 39.4
Gohir.A01G205800 Gossypium hirsutum HOM05D001286 ORTHO05D000440 2.2e-29 133.3 189 40.2
Gohir.D01G195200 Gossypium hirsutum HOM05D001286 ORTHO05D000440 2.2e-29 133.3 189 40.2
Gorai.002G239400 Gossypium raimondii HOM05D001286 ORTHO05D000440 2.2e-29 133.3 189 40.2
BcaC03g16285 Brassica carinata HOM05D001286 ORTHO05D000440 2.9e-29 132.9 80 80.0
C03p35920 Brassica napus HOM05D001286 ORTHO05D000440 2.9e-29 132.9 192 41.7
BolC2t10098H Brassica oleracea HOM05D001286 ORTHO05D000440 2.9e-29 132.9 80 80.0
BolC3t15900H Brassica oleracea HOM05D001286 ORTHO05D000440 2.9e-29 132.9 192 41.7
Sc20g0006330 Simmondsia chinensis HOM05D001286 ORTHO05D000440 2.9e-29 132.9 189 40.7
Thecc.05G090300 Theobroma cacao HOM05D001286 ORTHO05D000440 2.9e-29 132.9 187 41.2
ECA236G4173 Erigeron canadensis HOM05D001286 ORTHO05D000440 3.8e-29 132.5 189 39.7
HanXRQChr01g0010051 Helianthus annuus HOM05D001286 ORTHO05D000440 3.8e-29 132.5 189 40.7
Lsat_1_v5_gn_5_165000 Lactuca sativa HOM05D001286 ORTHO05D000440 3.8e-29 132.5 189 40.7
Ah.15g090840 Amaranthus hybridus HOM05D001286 ORTHO05D000440 5.0e-29 132.1 189 40.2
ECA248G0397 Erigeron canadensis HOM05D001286 ORTHO05D000440 5.0e-29 132.1 189 41.3
Sabra16G0085000 Salix brachista HOM05D001286 ORTHO05D000440 5.0e-29 132.1 201 40.3
Sabra16G0087200 Salix brachista HOM05D001286 ORTHO05D000440 5.0e-29 132.1 201 40.3
BcaB01g02647 Brassica carinata HOM05D001286 ORTHO05D000440 6.5e-29 131.7 192 41.7
CARHR253830 Cardamine hirsuta HOM05D001286 ORTHO05D000440 6.5e-29 131.7 199 39.7
TWI77G1030 Tripterygium wilfordii HOM05D001286 ORTHO05D000440 6.5e-29 131.7 196 39.8
BcaB01g01734 Brassica carinata HOM05D001286 ORTHO05D000440 8.4e-29 131.3 209 42.6
MD12G1025100 Malus domestica HOM05D001286 ORTHO05D000440 8.4e-29 131.3 187 40.6
Duzib106G1385 Durio zibethinus HOM05D001286 ORTHO05D000440 1.1e-28 131.0 187 41.2
Lalb_Chr01g0018111 Lupinus albus HOM05D001286 ORTHO05D000440 1.4e-28 130.6 189 40.7
Glyma.03G196600 Glycine max HOM05D001286 ORTHO05D000440 3.2e-28 129.4 189 40.7
Nitab4.5_0000692g0040 Nicotiana tabacum HOM05D001286 ORTHO05D000440 3.2e-28 129.4 187 39.0
Duzib093G1514 Durio zibethinus HOM05D001286 ORTHO05D000440 4.2e-28 129.0 203 38.9
Manes.09G054600 Manihot esculenta HOM05D001286 ORTHO05D000440 4.2e-28 129.0 188 40.4
Ah.08g210520 Amaranthus hybridus HOM05D001286 ORTHO05D000440 5.5e-28 128.6 189 40.2
PGSC0003DMG400008951 Solanum tuberosum HOM05D001286 ORTHO05D000440 5.5e-28 128.6 187 39.0
Actinidia05421 Actinidia chinensis HOM05D001286 ORTHO05D000440 9.3e-28 127.9 181 40.9
BcaB01g02651 Brassica carinata HOM05D001286 ORTHO05D000440 1.2e-27 127.5 197 41.6
BcaB01g02679 Brassica carinata HOM05D001286 ORTHO05D000440 1.2e-27 127.5 194 42.3
Sopen09g004630 Solanum pennellii HOM05D001286 ORTHO05D000440 1.2e-27 127.5 187 39.0
Solyc09g009880.3 Solanum lycopersicum HOM05D001286 ORTHO05D000440 1.6e-27 127.1 187 39.0
VMungo1383G3108 Vigna mungo HOM05D001286 ORTHO05D000440 1.6e-27 127.1 189 40.7
CAN.G397.56 Capsicum annuum HOM05D001286 ORTHO05D000440 2.1e-27 126.7 187 38.5
SGA_v2.0_scaffold31G12907 Striga asiatica HOM05D001286 ORTHO05D000440 2.1e-27 126.7 203 37.9
AT4G10700 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 2.7e-27 126.3 111 58.6
A03p29440 Brassica napus HOM05D001286 ORTHO05D000440 2.7e-27 126.3 195 41.5
COL.COLO4_29718 Corchorus olitorius HOM05D001286 ORTHO05D000440 2.7e-27 126.3 187 40.1
Medtr7g104785 Medicago truncatula HOM05D001286 ORTHO05D000440 3.5e-27 125.9 195 38.5
Phvul.001G190800 Phaseolus vulgaris HOM05D001286 ORTHO05D000440 3.5e-27 125.9 189 40.2
BcaC01g04623 Brassica carinata HOM05D001286 ORTHO05D000440 4.6e-27 125.6 195 41.0
C03p35590 Brassica napus HOM05D001286 ORTHO05D000440 4.6e-27 125.6 195 41.0
BolC3t15873H Brassica oleracea HOM05D001286 ORTHO05D000440 4.6e-27 125.6 195 41.0
BcaC01g04596 Brassica carinata HOM05D001286 ORTHO05D000440 1.0e-26 124.4 192 40.6
BraA03t12137Z Brassica rapa HOM05D001286 ORTHO05D000440 1.0e-26 124.4 178 42.7
BraA03t12138Z Brassica rapa HOM05D001286 ORTHO05D000440 1.0e-26 124.4 205 39.5
DCAR_020742 Daucus carota HOM05D001286 ORTHO05D000440 1.0e-26 124.4 189 40.2
Cc06_g05910 Coffea canephora HOM05D001286 ORTHO05D000440 3.0e-26 122.9 187 38.5
CANSAT64G2057 Cannabis sativa HOM05D001286 ORTHO05D000440 3.9e-26 122.5 202 37.6
SalBow3G0903 Salvia bowleyana HOM05D001286 ORTHO05D000440 5.1e-26 122.1 203 36.5
MSTRG.19268 Avicennia marina HOM05D001286 ORTHO05D000440 8.7e-26 121.3 203 36.5
A03p29450 Brassica napus HOM05D000315 ORTHO05D000440 1.1e-25 120.9 205 39.0
TPR.G23337 Trifolium pratense HOM05D001286 ORTHO05D000440 1.1e-25 120.9 203 38.4
FvH4_6g18890 Fragaria vesca HOM05D001286 ORTHO05D000440 1.5e-25 120.6 189 36.0
Migut.J01025 Erythranthe guttata HOM05D001286 ORTHO05D000440 1.9e-25 120.2 189 37.0
FAN14G2386 Fragaria x ananassa HOM05D001286 ORTHO05D000440 1.9e-25 120.2 189 35.4
Oeu047204.1 Olea europaea HOM05D001286 ORTHO05D000440 1.9e-25 120.2 203 36.9
Medtr7g104790 Medicago truncatula HOM05D001286 ORTHO05D000440 2.5e-25 119.8 196 35.7
BcaC04g23040 Brassica carinata HOM05D001286 ORTHO05D000440 3.3e-25 119.4 164 40.9
FAN05G3626 Fragaria x ananassa HOM05D001286 ORTHO05D000440 3.3e-25 119.4 189 35.4
unitig_744.g24700 Utricularia gibba HOM05D001286 ORTHO05D000440 5.7e-25 118.6 196 35.7
A02p26050 Brassica napus HOM05D001286 ORTHO05D000440 9.7e-25 117.9 188 41.0
MSTRG.26636 Avicennia marina HOM05D001286 ORTHO05D000440 2.8e-24 116.3 203 37.4
Oeu047860.1 Olea europaea HOM05D001286 ORTHO05D000440 3.7e-24 115.9 203 35.5
FAN02G2895 Fragaria x ananassa HOM05D001286 ORTHO05D000440 8.2e-24 114.8 189 34.4
RcHm_v2.0_Chr3g0473881 Rosa chinensis HOM05D001286 ORTHO05D000440 8.2e-24 114.8 189 34.4
Haze_19622 Corylus avellana HOM05D001286 ORTHO05D000440 1.4e-23 114.0 201 35.8
Gohir.D04G099000 Gossypium hirsutum HOM05D001286 ORTHO05D000440 1.8e-23 113.6 188 37.8
Gorai.009G401400 Gossypium raimondii HOM05D001286 ORTHO05D000440 1.8e-23 113.6 188 37.8
CARHR216300 Cardamine hirsuta HOM05D001286 ORTHO05D000440 2.4e-23 113.2 188 40.4
BcaC01g04597 Brassica carinata HOM05D001286 ORTHO05D000440 3.1e-23 112.8 159 41.5
Ca_09011_v3 Cicer arietinum L. HOM05D001286 ORTHO05D000440 5.3e-23 112.1 186 34.9
PGR142G0506 Punica granatum HOM05D001286 ORTHO05D000440 6.9e-23 111.7 181 36.5
Psat3g032440 Pisum sativum HOM05D001286 ORTHO05D000440 1.3e-21 107.5 203 35.5
Oeu025671.3 Olea europaea HOM05D001286 ORTHO05D000440 2.2e-21 106.7 204 33.8
BraA02t07603Z Brassica rapa HOM05D001286 ORTHO05D027858 5.0e-21 105.5 138 43.5
A01p28080 Brassica napus HOM05D001286 ORTHO05D000440 1.1e-20 104.4 196 37.2
BraA01t02936Z Brassica rapa HOM05D001286 ORTHO05D000440 1.1e-20 104.4 196 37.2
SalBow5G2315 Salvia bowleyana HOM05D001286 ORTHO05D000440 1.4e-20 104.0 198 34.8
C01p35560 Brassica napus HOM05D001286 ORTHO05D000440 9.4e-20 101.3 196 36.7
BolC1t03516H Brassica oleracea HOM05D001286 ORTHO05D000440 9.4e-20 101.3 196 36.7
BcaC09g49525 Brassica carinata HOM05D001286 ORTHO05D000440 2.7e-19 99.8 196 36.2
Sp2g05780 Schrenkiella parvula HOM05D001286 ORTHO05D000440 1.4e-18 97.4 187 35.8
CARHR054340 Cardamine hirsuta HOM05D001286 ORTHO05D000440 1.8e-18 97.1 180 37.8
AL2G18850 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 2.3e-18 96.7 181 36.5
Thhalv10023551m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 5.1e-18 95.5 187 36.4
BcaB01g02678 Brassica carinata HOM05D001286 ORTHO05D000440 2.0e-17 93.6 209 32.5
AT1G57790 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 3.3e-17 92.8 191 35.6
Migut.O00798 Erythranthe guttata HOM05D001286 ORTHO05D000440 3.3e-17 92.8 187 32.6
AL6G43900 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 1.3e-16 90.9 142 38.0
Psat3g032400 Pisum sativum HOM05D001286 ORTHO05D000440 1.3e-16 90.9 180 32.8
Lj3P997T36 Lonicera japonica HOM05D001286 ORTHO05D000440 2.8e-16 89.7 184 33.7
SalBow5G5642 Salvia bowleyana HOM05D001286 ORTHO05D000440 8.2e-16 88.2 154 34.4
C08p31760 Brassica napus HOM05D001286 ORTHO05D000440 3.1e-15 86.3 200 32.5
BcaB04g20176 Brassica carinata HOM05D001286 ORTHO05D000440 9.1e-15 84.7 211 30.8
BolC8t50797H Brassica oleracea HOM05D001286 ORTHO05D000440 4.5e-14 82.4 200 31.5
A02p26090 Brassica napus HOM05D001286 ORTHO05D027858 2.2e-13 80.1 71 54.9
Medtr7g104760 Medicago truncatula HOM05D001286 ORTHO05D000440 2.9e-13 79.7 145 34.5
A09p10860 Brassica napus HOM05D001286 ORTHO05D000440 3.8e-13 79.3 140 37.1
AL5G37800 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 5.0e-13 79.0 205 32.7
Aa31LG2G11120 Aethionema arabicum HOM05D001286 ORTHO05D000440 1.9e-12 77.0 193 31.1
CARHR166590 Cardamine hirsuta HOM05D001286 ORTHO05D000440 1.9e-12 77.0 206 32.5
THA.LOC104816392 Tarenaya hassleriana HOM05D001286 ORTHO05D000440 3.2e-12 76.3 151 32.5
THA.LOC104816671 Tarenaya hassleriana HOM05D001286 ORTHO05D000440 3.2e-12 76.3 160 32.5
Cfa016617 Carpinus fangiana HOM05D001286 ORTHO05D000440 4.2e-12 75.9 157 34.4
A09p49390 Brassica napus HOM05D001050 ORTHO05D001270 1.2e-11 74.3 204 30.4
BraA09t40392Z Brassica rapa HOM05D001050 ORTHO05D001270 1.2e-11 74.3 204 30.4
AT3G56470 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 1.6e-11 73.9 205 31.7
Carub.0005s2324 Capsella rubella HOM05D001286 ORTHO05D000440 7.9e-11 71.6 190 31.6
Aa31LG2G11100 Aethionema arabicum HOM05D001286 ORTHO05D000440 1.4e-10 70.9 175 31.4
AL4G43800 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 1.8e-10 70.5 162 30.2
Aa31csc81G80 Aethionema arabicum HOM05D001286 ORTHO05D000440 2.0e-09 67.0 196 28.6
Carub.0004s2747 Capsella rubella HOM05D001286 ORTHO05D000440 1.7e-08 63.9 193 28.0
Carub.0006s3153 Capsella rubella HOM05D001286 ORTHO05D000440 2.2e-08 63.5 119 37.0
C02p41540 Brassica napus HOM05D001286 ORTHO05D027858 2.8e-08 63.2 57 54.4
BolC2t10171H Brassica oleracea HOM05D001286 ORTHO05D027858 2.8e-08 63.2 57 54.4
Thhalv10006387m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 4.8e-08 62.4 143 31.5
Thhalv10015924m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 4.8e-08 62.4 181 30.4
Nn2g13245 Nelumbo nucifera HOM05D001286 ORTHO05D000440 3.1e-07 59.7 185 26.5


User provided reference genes

Program Settings