Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10029346m.g Eutrema salsugineum HOM05D001705 ORTHO05D008928 1.2e-80 303.1 151 100.0
Sp6g07460 Schrenkiella parvula HOM05D001705 ORTHO05D008928 1.5e-43 179.9 104 88.5
AT4G10100 Arabidopsis thaliana HOM05D001705 ORTHO05D008928 3.7e-42 175.3 94 93.6
BcaB01g01450 Brassica carinata HOM05D001705 ORTHO05D008928 1.1e-41 173.7 113 81.4
BcaB05g23921 Brassica carinata HOM05D001705 ORTHO05D008928 3.1e-41 172.2 104 84.6
AL6G43910 Arabidopsis lyrata HOM05D001705 ORTHO05D008928 6.9e-41 171.0 93 92.5
A09p28840 Brassica napus HOM05D001705 ORTHO05D008928 9.0e-41 170.6 105 82.9
BraA09t38446Z Brassica rapa HOM05D001705 ORTHO05D008928 9.0e-41 170.6 105 82.9
BcaC04g21016 Brassica carinata HOM05D001705 ORTHO05D008928 1.2e-40 170.2 104 83.7
C09p36640 Brassica napus HOM05D001705 ORTHO05D008928 1.5e-40 169.9 154 64.3
BolC9t56496H Brassica oleracea HOM05D001705 ORTHO05D008928 1.5e-40 169.9 154 64.3
Aa31LG9G11900 Aethionema arabicum HOM05D001705 ORTHO05D008928 5.9e-40 167.9 103 83.5
CARHR261140 Cardamine hirsuta HOM05D001705 ORTHO05D008928 2.9e-39 165.6 96 89.6
BcaB04g18852 Brassica carinata HOM05D001705 ORTHO05D008928 1.4e-38 163.3 92 88.0
Carub.0006s2867 Capsella rubella HOM05D001705 ORTHO05D008928 7.2e-38 161.0 94 87.2
THA.LOC104815816 Tarenaya hassleriana HOM05D001705 ORTHO05D008928 2.6e-32 142.5 92 72.8
Duzib106G1039 Durio zibethinus HOM05D001705 ORTHO05D008928 7.2e-30 134.4 101 63.4
MBI06_g14319_MAGBIO Magnolia biondii HOM05D001705 ORTHO05D008928 1.2e-29 133.7 97 67.0
AUR62028345 Chenopodium quinoa HOM05D001705 ORTHO05D008928 1.4e-28 130.2 89 67.4
AUR62025342 Chenopodium quinoa HOM05D001705 ORTHO05D008928 6.7e-28 127.9 103 60.2
TWI81G0898 Tripterygium wilfordii HOM05D001705 ORTHO05D008928 6.7e-28 127.9 84 73.8
Dinv22114 Davidia involucrata HOM05D001705 ORTHO05D008928 2.6e-27 125.9 89 67.4
TAR376G0455 Trochodendron aralioides HOM05D001705 ORTHO05D008928 2.6e-27 125.9 89 67.4
EL10Ac8g18938 Beta vulgaris HOM05D001705 ORTHO05D008928 4.4e-27 125.2 84 66.7
Dinv37409 Davidia involucrata HOM05D001705 ORTHO05D008928 4.4e-27 125.2 110 55.5
ClCG08G000770 Citrullus lanatus HOM05D001705 ORTHO05D008928 5.7e-27 124.8 82 70.7
TAR628G0577 Trochodendron aralioides HOM05D001705 ORTHO05D008928 5.7e-27 124.8 84 70.2
Ah.13g075530 Amaranthus hybridus HOM05D001705 ORTHO05D008928 7.4e-27 124.4 88 65.9
Cpa.g.sc21.88 Carica papaya HOM05D001705 ORTHO05D008928 7.4e-27 124.4 100 60.0
Lalb_Chr15g0079721 Lupinus albus HOM05D001705 ORTHO05D008928 9.7e-27 124.0 84 65.5
Potri.019G070801 Populus trichocarpa HOM05D001705 ORTHO05D008928 9.7e-27 124.0 84 67.9
Sabra19G0082700 Salix brachista HOM05D001705 ORTHO05D008928 9.7e-27 124.0 84 67.9
Cfa008073 Carpinus fangiana HOM05D001705 ORTHO05D008928 1.3e-26 123.6 92 65.2
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 1.7e-26 123.2 97 58.8
Sc18g0002990 Simmondsia chinensis HOM05D001705 ORTHO05D008928 1.7e-26 123.2 112 55.4
PGR044G0661 Punica granatum HOM05D001705 ORTHO05D008928 2.8e-26 122.5 101 59.4
Thecc.08G179500 Theobroma cacao HOM05D001705 ORTHO05D008928 2.8e-26 122.5 84 66.7
VMungo1080G1609 Vigna mungo HOM05D001705 ORTHO05D008928 2.8e-26 122.5 100 61.0
Haze_13961 Corylus avellana HOM05D001705 ORTHO05D008953 4.8e-26 121.7 88 64.8
CsaV3_5G039950 Cucumis sativus L. HOM05D001705 ORTHO05D008928 4.8e-26 121.7 82 70.7
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 6.3e-26 121.3 97 57.7
CiPaw.03G013900 Carya illinoinensis HOM05D001705 ORTHO05D008928 6.3e-26 121.3 89 61.8
CiPaw.10G112700 Carya illinoinensis HOM05D001705 ORTHO05D008928 6.3e-26 121.3 106 58.5
COL.COLO4_25141 Corchorus olitorius HOM05D001705 ORTHO05D008928 6.3e-26 121.3 84 65.5
Rhsim12G0002800 Rhododendron simsii HOM05D001705 ORTHO05D008928 6.3e-26 121.3 102 56.9
Lj3g0024983 Lotus japonicus HOM05D001705 ORTHO05D008928 8.2e-26 120.9 96 59.4
Phvul.L001622 Phaseolus vulgaris HOM05D001705 ORTHO05D008928 8.2e-26 120.9 84 67.9
Actinidia29374 Actinidia chinensis HOM05D001705 ORTHO05D008928 1.1e-25 120.6 141 48.9
QL07p031108 Quercus lobata HOM05D001705 ORTHO05D008928 1.1e-25 120.6 105 59.0
MELO3C022174.2 Cucumis melo HOM05D001705 ORTHO05D008928 1.4e-25 120.2 82 69.5
Glyma.06G321300 Glycine max HOM05D001705 ORTHO05D008928 1.4e-25 120.2 102 58.8
Gohir.A06G168000 Gossypium hirsutum HOM05D001705 ORTHO05D008928 1.4e-25 120.2 86 64.0
Gohir.D06G175400 Gossypium hirsutum HOM05D001705 ORTHO05D008928 1.8e-25 119.8 86 64.0
Gorai.010G205800 Gossypium raimondii HOM05D001705 ORTHO05D008928 1.8e-25 119.8 86 64.0
Aqoxy1G00582 Aquilegia oxysepala HOM05D001705 ORTHO05D008928 2.4e-25 119.4 84 65.5
GSVIVG01036284001 Vitis vinifera HOM05D001705 ORTHO05D008928 2.4e-25 119.4 90 65.6
Ciclev10022992m.g Citrus clementina HOM05D001705 ORTHO05D008928 4.1e-25 118.6 84 65.5
FvH4_2g00750 Fragaria vesca HOM05D001705 ORTHO05D008928 4.1e-25 118.6 84 66.7
FAN24G2035 Fragaria x ananassa HOM05D001705 ORTHO05D008928 4.1e-25 118.6 84 66.7
FAN27G0168 Fragaria x ananassa HOM05D001705 ORTHO05D008928 4.1e-25 118.6 84 66.7
Psat5g227400 Pisum sativum HOM05D001705 ORTHO05D008928 4.1e-25 118.6 86 65.1
QL07p047839 Quercus lobata HOM05D001705 ORTHO05D008928 4.1e-25 118.6 105 58.1
Medtr3g008540 Medicago truncatula HOM05D001705 ORTHO05D008928 5.3e-25 118.2 92 64.1
Nn6g34378 Nelumbo nucifera HOM05D001705 ORTHO05D008928 6.9e-25 117.9 97 58.8
Sed0017068 Sechium edule HOM05D001705 ORTHO05D008928 9.1e-25 117.5 82 65.9
vmacro00942 Vaccinium macrocarpon HOM05D001705 ORTHO05D008928 9.1e-25 117.5 102 54.9
DCAR_003512 Daucus carota HOM05D001705 ORTHO05D008928 1.2e-24 117.1 94 57.4
Lsat_1_v5_gn_1_56320 Lactuca sativa HOM05D001705 ORTHO05D008928 1.2e-24 117.1 95 56.8
Manes.03G079500 Manihot esculenta HOM05D001705 ORTHO05D008928 1.2e-24 117.1 84 60.7
Eucgr.F02944 Eucalyptus grandis HOM05D001705 ORTHO05D008928 1.5e-24 116.7 89 59.6
MD10G1004200 Malus domestica HOM05D001705 ORTHO05D008928 1.5e-24 116.7 84 66.7
RcHm_v2.0_Chr6g0251131 Rosa chinensis HOM05D001705 ORTHO05D008928 1.5e-24 116.7 84 65.5
Atru.chr3.1320 Acer truncatum HOM05D001705 ORTHO05D008928 2.0e-24 116.3 84 66.7
CANSAT21G1408 Cannabis sativa HOM05D001705 ORTHO05D008928 2.0e-24 116.3 83 63.9
CANSAT21G2117 Cannabis sativa HOM05D001705 ORTHO05D008928 2.0e-24 116.3 83 63.9
CDE11G0405 Ceratophyllum demersum HOM05D001705 ORTHO05D008928 2.0e-24 116.3 100 55.0
MD05G1003200 Malus domestica HOM05D001705 ORTHO05D008928 2.0e-24 116.3 84 66.7
ECA248G1877 Erigeron canadensis HOM05D001705 ORTHO05D008928 3.4e-24 115.5 94 59.6
HanXRQChr01g0026311 Helianthus annuus HOM05D001705 ORTHO05D008928 3.4e-24 115.5 82 63.4
Hma1.2p1_2213F.1_g317220 Hydrangea macrophylla HOM05D001705 ORTHO05D008928 3.4e-24 115.5 81 64.2
Lj3g0021440 Lotus japonicus HOM05D001705 ORTHO05D008928 4.5e-24 115.2 102 54.9
Migut.C01384 Erythranthe guttata HOM05D001705 ORTHO05D008928 5.9e-24 114.8 89 58.4
SalBow7G0612 Salvia bowleyana HOM05D001705 ORTHO05D008928 7.7e-24 114.4 89 59.6
Hma1.2p1_0238F.1_g099670 Hydrangea macrophylla HOM05D001705 ORTHO05D008928 1.0e-23 114.0 82 63.4
Prupe.8G006600 Prunus persica HOM05D001705 ORTHO05D008928 1.7e-23 113.2 84 63.1
unitig_8.g4896 Utricularia gibba HOM05D001705 ORTHO05D008928 2.9e-23 112.5 89 59.6
arahy.Tifrunner.gnm1.ann1.X4BGNP Arachis hypogaea HOM05D001705 ORTHO05D008928 3.8e-23 112.1 90 60.0
BolC2t10291H Brassica oleracea HOM05D001705 ORTHO05D008928 3.8e-23 112.1 73 79.5
MSTRG.5080 Avicennia marina HOM05D001705 ORTHO05D008928 5.0e-23 111.7 92 57.6
CAN.G836.15 Capsicum annuum HOM05D001705 ORTHO05D008928 4.2e-22 108.6 98 52.0
Peaxi162Scf00078g00076 Petunia axillaris HOM05D001705 ORTHO05D008928 7.2e-22 107.8 87 58.6
PGSC0003DMG400010036 Solanum tuberosum HOM05D001705 ORTHO05D008928 9.4e-22 107.5 87 57.5
ATR0757G218 Amborella trichopoda HOM05D001705 ORTHO05D008928 1.2e-21 107.1 103 51.5
Nitab4.5_0007940g0020 Nicotiana tabacum HOM05D001705 ORTHO05D008928 1.6e-21 106.7 115 47.0
Zm00001eb244080 Zea mays HOM05D001705 ORTHO05D008928 2.7e-21 105.9 89 57.3
PSO339G0564 Papaver somniferum HOM05D001705 ORTHO05D008928 3.6e-21 105.5 85 61.2
Sopen02g034700 Solanum pennellii HOM05D001705 ORTHO05D008928 4.7e-21 105.1 90 54.4
Nitab4.5_0003432g0050 Nicotiana tabacum HOM05D001705 ORTHO05D008928 7.9e-21 104.4 87 56.3
Zm00001eb182270 Zea mays HOM05D001705 ORTHO05D008928 1.4e-20 103.6 80 61.2
HPP92_013556 Vanilla planifolia HOM05D001705 ORTHO05D008928 3.3e-19 99.0 84 56.0
VMungo0464G0569 Vigna mungo HOM05D001705 ORTHO05D008928 5.7e-19 98.2 85 56.5
SEGI_06051 Sequoiadendron giganteum HOM05D001705 ORTHO05D008928 1.3e-18 97.1 91 49.5
SMO119G0349 Selaginella moellendorffii HOM05D001705 ORTHO05D008928 1.8e-17 93.2 83 48.2
SMO178G0001 Selaginella moellendorffii HOM05D001705 ORTHO05D008928 1.8e-17 93.2 83 48.2
ATR1089G014 Amborella trichopoda HOM05D001705 ORTHO05D008928 3.1e-17 92.4 107 44.9
Os02g0558300 Oryza sativa ssp. japonica HOM05D001705 ORTHO05D008928 3.1e-17 92.4 77 58.4
Pp3c24_14090 Physcomitrium patens HOM05D001705 ORTHO05D008928 2.6e-16 89.4 81 48.1
Mapoly0053s0105 Marchantia polymorpha HOM05D001705 ORTHO05D008928 1.0e-15 87.4 82 56.1
SHI16716 Sapria himalayana HOM05D001705 ORTHO05D008928 4.2e-14 82.0 87 43.7
Solyc02g090010.3 Solanum lycopersicum HOM05D001705 ORTHO05D008928 2.1e-13 79.7 63 57.1
CBR_g41370 Chara braunii HOM05D001705 ORTHO05D008928 1.7e-10 70.1 84 36.9
Cre08.g382545 Chlamydomonas reinhardtii HOM05D001705 ORTHO05D008928 8.2e-10 67.8 84 40.5
CBR_g5690 Chara braunii HOM05D001705 ORTHO05D008928 1.2e-08 63.9 80 40.0
MCO06G125 Micromonas commoda HOM05D001705 ORTHO05D008928 1.3e-07 60.5 84 44.0
BcaC03g16423 Brassica carinata HOM05D001705 ORTHO05D008928 5.0e-07 58.5 30 86.7


User provided reference genes

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