Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10029337m.g Eutrema salsugineum HOM05D007693 ORTHO05D002086 6.9e-43 176.8 83 100.0
Thhalv10003330m.g Eutrema salsugineum HOM05D007693 ORTHO05D002086 1.4e-30 136.0 82 76.8
AL1G49470 Arabidopsis lyrata HOM05D007693 ORTHO05D002086 2.3e-22 108.6 77 63.6
AL9U10420 Arabidopsis lyrata HOM05D007693 ORTHO05D002086 2.3e-22 108.6 77 63.6
BcaC01g00556 Brassica carinata HOM05D007693 ORTHO05D002086 2.3e-22 108.6 80 63.8
C07p06000 Brassica napus HOM05D007693 ORTHO05D002086 8.8e-22 106.7 75 65.3
BolC7t41011H Brassica oleracea HOM05D007693 ORTHO05D002086 8.8e-22 106.7 75 65.3
BcaB04g20521 Brassica carinata HOM05D007693 ORTHO05D002086 3.3e-21 104.8 78 64.1
BraA06t25204Z Brassica rapa HOM05D007693 ORTHO05D002086 8.2e-20 100.1 75 62.7
BcaB04g17832 Brassica carinata HOM05D007693 ORTHO05D002086 2.4e-19 98.6 76 61.8
C09p24970 Brassica napus HOM05D007693 ORTHO05D002086 3.1e-19 98.2 75 62.7
AT2G07505 Arabidopsis thaliana HOM05D007693 ORTHO05D002086 2.0e-18 95.5 82 57.3
BcaB02g06468 Brassica carinata HOM05D007693 ORTHO05D002086 2.2e-17 92.0 73 56.2
Carub.0003s3077 Capsella rubella HOM05D007693 ORTHO05D002086 3.8e-17 91.3 83 55.4
Sp7g02510 Schrenkiella parvula HOM05D007693 ORTHO05D002086 3.8e-17 91.3 81 51.9
AT2G06265 Arabidopsis thaliana HOM05D007693 ORTHO05D002086 1.5e-16 89.4 78 56.4
CARHR108830 Cardamine hirsuta HOM05D007693 ORTHO05D002086 1.5e-16 89.4 83 54.2
Sp7g12150 Schrenkiella parvula HOM05D007693 ORTHO05D002086 3.2e-16 88.2 77 53.2
BcaC05g29744 Brassica carinata HOM05D007693 ORTHO05D002086 1.6e-15 85.9 81 55.6
BcaC06g32504 Brassica carinata HOM05D007693 ORTHO05D002086 1.6e-15 85.9 81 55.6
CARHR055980 Cardamine hirsuta HOM05D007693 ORTHO05D002086 1.6e-15 85.9 83 51.8
BcaC05g28311 Brassica carinata HOM05D007693 ORTHO05D002086 6.1e-15 84.0 78 57.7
BcaC03g15315 Brassica carinata HOM05D007693 ORTHO05D002086 1.4e-14 82.8 60 63.3
BcaC05g25266 Brassica carinata HOM05D007693 ORTHO05D002086 3.0e-14 81.6 78 56.4
Carub.0008s0706 Capsella rubella HOM05D007693 ORTHO05D002086 5.2e-14 80.9 82 48.8
Thhalv10017745m.g Eutrema salsugineum HOM05D007693 ORTHO05D002086 5.2e-14 80.9 82 48.8
Sp5g15320 Schrenkiella parvula HOM05D007693 ORTHO05D002086 5.2e-14 80.9 68 55.9
BcaB02g10221 Brassica carinata HOM05D007693 ORTHO05D002086 6.8e-14 80.5 78 55.1
BcaB04g16994 Brassica carinata HOM05D007693 ORTHO05D002086 6.8e-14 80.5 78 55.1
BcaC03g14636 Brassica carinata HOM05D007693 ORTHO05D002086 8.8e-14 80.1 65 58.5
BraA06t24544Z Brassica rapa HOM05D007693 ORTHO05D002086 8.8e-14 80.1 66 54.5
Thhalv10002853m.g Eutrema salsugineum HOM05D007693 ORTHO05D002086 8.8e-14 80.1 82 46.3
A04p22190 Brassica napus HOM05D007693 ORTHO05D002086 3.4e-13 78.2 66 53.0
BraA10t43040Z Brassica rapa HOM05D007693 ORTHO05D002086 3.4e-13 78.2 66 53.0
BcaB06g27481 Brassica carinata HOM05D007693 ORTHO05D002086 4.4e-13 77.8 65 52.3
BcaB06g26026 Brassica carinata HOM05D007693 ORTHO05D002086 5.7e-13 77.4 76 56.6
BraA05t22114Z Brassica rapa HOM05D007693 ORTHO05D002086 7.5e-13 77.0 66 53.0
BcaB05g22684 Brassica carinata HOM05D007693 ORTHO05D002086 9.8e-13 76.6 78 47.4
BcaC06g33294 Brassica carinata HOM05D007693 ORTHO05D002086 1.3e-12 76.3 62 56.5
BcaB08g34442 Brassica carinata HOM05D007693 ORTHO05D002086 1.7e-12 75.9 78 52.6
BcaB05g22932 Brassica carinata HOM05D007693 ORTHO05D002086 2.2e-12 75.5 59 54.2
BcaB07g32567 Brassica carinata HOM05D001038 ORTHO05D010763 2.2e-12 75.5 70 50.0
BcaC04g21625 Brassica carinata HOM05D001038 ORTHO05D016703 2.8e-12 75.1 66 50.0
AL22U10020 Arabidopsis lyrata HOM05D007693 ORTHO05D002086 3.7e-12 74.7 75 48.0
Thhalv10003362m.g Eutrema salsugineum HOM05D007693 ORTHO05D002086 3.7e-12 74.7 66 54.5
Thhalv10012038m.g Eutrema salsugineum HOM05D007693 ORTHO05D002086 3.7e-12 74.7 80 42.5
BcaC02g11475 Brassica carinata HOM05D007693 ORTHO05D002086 1.4e-11 72.8 59 54.2
AL2G18820 Arabidopsis lyrata HOM05D007693 ORTHO05D002086 1.8e-11 72.4 75 46.7
AL4G16420 Arabidopsis lyrata HOM05D007693 ORTHO05D002086 1.8e-11 72.4 75 46.7
BcaC06g35712 Brassica carinata HOM05D007693 ORTHO05D002086 1.8e-11 72.4 59 55.9
SpUn1230_0020 Schrenkiella parvula HOM05D007693 ORTHO05D002086 2.4e-11 72.0 64 53.1
BolC8t47992H Brassica oleracea HOM05D007693 ORTHO05D002086 3.1e-11 71.6 78 43.6
BraA10t42989Z Brassica rapa HOM05D007693 ORTHO05D002086 3.1e-11 71.6 81 44.4
Thhalv10011039m.g Eutrema salsugineum HOM05D007693 ORTHO05D002086 3.1e-11 71.6 73 47.9
BcaB05g24592 Brassica carinata HOM05D007693 ORTHO05D002086 4.1e-11 71.2 59 52.5
BcaB06g29566 Brassica carinata HOM05D007693 ORTHO05D002086 5.4e-11 70.9 59 52.5
BcaC06g36209 Brassica carinata HOM05D000977 ORTHO05D002086 9.1e-11 70.1 78 43.6
BcaB05g23148 Brassica carinata HOM05D007693 ORTHO05D002086 1.6e-10 69.3 65 50.8
BolC3t20530H Brassica oleracea HOM05D007693 ORTHO05D002086 2.0e-10 68.9 59 52.5
Sp5g21400 Schrenkiella parvula HOM05D018387 ORTHO05D002086 2.7e-10 68.6 75 46.7
BcaB07g33925 Brassica carinata HOM05D000888 ORTHO05D000740 3.5e-10 68.2 65 47.7
BcaB07g33397 Brassica carinata HOM05D004489 ORTHO05D000740 5.9e-10 67.4 65 49.2
BcaC07g37014 Brassica carinata HOM05D007693 ORTHO05D002086 5.9e-10 67.4 72 50.0
BcaC08g44290 Brassica carinata HOM05D007693 ORTHO05D002086 7.7e-10 67.0 59 50.8
Sp6g08580 Schrenkiella parvula HOM05D018387 ORTHO05D002086 7.7e-10 67.0 79 43.0
BcaC06g33699 Brassica carinata HOM05D007462 ORTHO05D011074 1.3e-09 66.2 73 47.9
BcaB06g26931 Brassica carinata HOM05D007693 ORTHO05D015462 1.7e-09 65.9 65 49.2
BcaC01g04891 Brassica carinata HOM05D007462 ORTHO05D011074 1.7e-09 65.9 73 47.9
BcaB04g18049 Brassica carinata HOM05D007693 ORTHO05D015462 2.2e-09 65.5 67 46.3
BcaC04g22963 Brassica carinata HOM05D007462 ORTHO05D011074 2.2e-09 65.5 65 47.7
BolC9t54236H Brassica oleracea HOM05D007462 ORTHO05D011074 2.2e-09 65.5 65 47.7
BcaB04g17442 Brassica carinata HOM05D007693 ORTHO05D002086 2.9e-09 65.1 81 39.5
BcaB06g26738 Brassica carinata HOM05D007462 ORTHO05D002086 3.8e-09 64.7 74 44.6
BcaC05g28526 Brassica carinata HOM05D000977 ORTHO05D002086 3.8e-09 64.7 78 41.0
BcaB04g19811 Brassica carinata HOM05D007462 ORTHO05D002086 5.0e-09 64.3 61 45.9
BcaC04g20658 Brassica carinata HOM05D007462 ORTHO05D002086 8.5e-09 63.5 75 44.0
BcaC05g26662 Brassica carinata HOM05D007462 ORTHO05D011074 8.5e-09 63.5 76 40.8
BcaB04g17689 Brassica carinata HOM05D007462 ORTHO05D002086 1.1e-08 63.2 74 43.2
BcaC08g44148 Brassica carinata HOM05D007462 ORTHO05D011074 1.1e-08 63.2 73 45.2
AT1G48285 Arabidopsis thaliana HOM05D007462 ORTHO05D011074 1.5e-08 62.8 77 41.6
AT2G37125 Arabidopsis thaliana HOM05D007462 ORTHO05D011074 1.5e-08 62.8 77 41.6
Aa31LG2G13790 Aethionema arabicum HOM05D007462 ORTHO05D002086 1.9e-08 62.4 60 45.0
BcaC03g17084 Brassica carinata HOM05D007462 ORTHO05D011074 1.9e-08 62.4 73 46.6
BolC1t02623H Brassica oleracea HOM05D007462 ORTHO05D011074 1.9e-08 62.4 76 40.8
Sp1g34950 Schrenkiella parvula HOM05D007693 ORTHO05D002086 1.9e-08 62.4 64 48.4
Sp6g12290 Schrenkiella parvula HOM05D007693 ORTHO05D002086 1.9e-08 62.4 71 47.9
BcaC05g28653 Brassica carinata HOM05D007462 ORTHO05D011074 2.5e-08 62.0 76 40.8
C05p36680 Brassica napus HOM05D007693 ORTHO05D002086 2.5e-08 62.0 79 40.5
THA.LOC104806974 Tarenaya hassleriana HOM05D007462 ORTHO05D002086 2.5e-08 62.0 66 43.9
THA.LOC104817596 Tarenaya hassleriana HOM05D007462 ORTHO05D002086 2.5e-08 62.0 57 50.9
BcaB04g17468 Brassica carinata HOM05D007462 ORTHO05D011074 3.2e-08 61.6 83 39.8
BcaC01g05867 Brassica carinata HOM05D007462 ORTHO05D011074 3.2e-08 61.6 76 40.8
BcaC04g22910 Brassica carinata HOM05D007462 ORTHO05D011074 3.2e-08 61.6 76 40.8
BcaC07g38352 Brassica carinata HOM05D007462 ORTHO05D011074 3.2e-08 61.6 76 40.8
THA.LOC104804713 Tarenaya hassleriana HOM05D007462 ORTHO05D002086 4.2e-08 61.2 75 41.3
BcaB07g33915 Brassica carinata HOM05D007693 ORTHO05D015462 5.5e-08 60.8 65 44.6
BcaC03g14143 Brassica carinata HOM05D007462 ORTHO05D011074 5.5e-08 60.8 75 40.0
Thhalv10022239m.g Eutrema salsugineum HOM05D007693 ORTHO05D002086 5.5e-08 60.8 61 49.2
BcaC08g44171 Brassica carinata HOM05D007462 ORTHO05D002086 7.2e-08 60.5 74 40.5
THA.LOC104818502 Tarenaya hassleriana HOM05D007693 ORTHO05D002086 7.2e-08 60.5 59 44.1
BcaC03g14861 Brassica carinata HOM05D007462 ORTHO05D011074 9.4e-08 60.1 76 39.5
BcaC08g45815 Brassica carinata HOM05D007462 ORTHO05D011074 9.4e-08 60.1 76 39.5
C04p58390 Brassica napus HOM05D007462 ORTHO05D002086 9.4e-08 60.1 74 40.5
BolC6t36760H Brassica oleracea HOM05D007462 ORTHO05D002086 9.4e-08 60.1 74 40.5
BraA05t21229Z Brassica rapa HOM05D007462 ORTHO05D002086 9.4e-08 60.1 76 40.8
C05p48940 Brassica napus HOM05D007693 ORTHO05D002086 1.2e-07 59.7 79 39.2
BolC5t33356H Brassica oleracea HOM05D000675 ORTHO05D002086 1.2e-07 59.7 63 41.3
Sp7g13130 Schrenkiella parvula HOM05D007693 ORTHO05D002086 1.2e-07 59.7 80 45.0
BcaC01g03692 Brassica carinata HOM05D007462 ORTHO05D002086 1.6e-07 59.3 75 41.3
BcaC09g50767 Brassica carinata HOM05D007462 ORTHO05D011074 1.6e-07 59.3 81 38.3
BolC5t32402H Brassica oleracea HOM05D007693 ORTHO05D002086 2.1e-07 58.9 79 39.2
BolC4t27363H Brassica oleracea HOM05D007462 ORTHO05D002086 2.7e-07 58.5 74 39.2
BcaB07g32893 Brassica carinata HOM05D000675 ORTHO05D002086 3.6e-07 58.2 53 50.9
BcaC07g38572 Brassica carinata HOM05D007462 ORTHO05D011074 3.6e-07 58.2 76 38.2
BolC2t11294H Brassica oleracea HOM05D006289 ORTHO05D002086 4.7e-07 57.8 65 44.6
BraA05t20011Z Brassica rapa HOM05D007462 ORTHO05D002086 4.7e-07 57.8 65 46.2
BraA07t28690Z Brassica rapa HOM05D007462 ORTHO05D002086 4.7e-07 57.8 70 42.9
Sp7g03170 Schrenkiella parvula HOM05D018387 ORTHO05D002086 4.7e-07 57.8 78 43.6
BolC5t32014H Brassica oleracea HOM05D000675 ORTHO05D002086 6.1e-07 57.4 74 35.1
BcaB07g32457 Brassica carinata HOM05D007462 ORTHO05D002086 8.0e-07 57.0 61 42.6
BcaC02g11566 Brassica carinata HOM05D007462 ORTHO05D011074 8.0e-07 57.0 75 38.7
BcaC06g34269 Brassica carinata HOM05D007462 ORTHO05D002086 8.0e-07 57.0 75 40.0
BolC4t26247H Brassica oleracea HOM05D007462 ORTHO05D002086 8.0e-07 57.0 74 39.2
BcaC01g01799 Brassica carinata HOM05D007462 ORTHO05D011074 1.0e-06 56.6 76 38.2
BcaC03g16220 Brassica carinata HOM05D000675 ORTHO05D002086 1.0e-06 56.6 52 50.0
BcaC05g28255 Brassica carinata HOM05D000675 ORTHO05D002086 1.0e-06 56.6 52 50.0
BcaC06g36214 Brassica carinata HOM05D000675 ORTHO05D002086 1.0e-06 56.6 52 50.0
C02p52100 Brassica napus HOM05D007462 ORTHO05D002086 1.0e-06 56.6 65 44.6
BcaB02g10757 Brassica carinata HOM05D007462 ORTHO05D002086 1.4e-06 56.2 74 39.2
BcaB08g34481 Brassica carinata HOM05D000675 ORTHO05D002086 1.4e-06 56.2 69 40.6
C06p13560 Brassica napus HOM05D000675 ORTHO05D032734 1.4e-06 56.2 77 35.1
BraA10t43661Z Brassica rapa HOM05D007693 ORTHO05D002086 1.4e-06 56.2 48 50.0
CARHR264280 Cardamine hirsuta HOM05D007462 ORTHO05D011074 1.4e-06 56.2 83 39.8
BraA01t02125Z Brassica rapa HOM05D007462 ORTHO05D002086 1.8e-06 55.8 75 38.7
THA.LOC104810579 Tarenaya hassleriana HOM05D028755 ORTHO05D002086 1.8e-06 55.8 59 37.3
BcaB05g21895 Brassica carinata HOM05D000675 ORTHO05D002086 2.3e-06 55.5 57 45.6
BcaB05g22219 Brassica carinata HOM05D000675 ORTHO05D002086 2.3e-06 55.5 57 45.6
BcaC05g27351 Brassica carinata HOM05D000675 ORTHO05D002086 2.3e-06 55.5 57 45.6
BcaC06g36717 Brassica carinata HOM05D000977 ORTHO05D002086 2.3e-06 55.5 76 39.5
BcaNung00058 Brassica carinata HOM05D007462 ORTHO05D011074 2.3e-06 55.5 65 40.0
Carub.0012s0017 Capsella rubella HOM05D007462 ORTHO05D011074 2.3e-06 55.5 64 43.8
THA.LOC104803181 Tarenaya hassleriana HOM05D028755 ORTHO05D002086 2.3e-06 55.5 67 46.3
BcaB06g27935 Brassica carinata HOM05D026000 ORTHO05D002086 3.0e-06 55.1 38 68.4
BcaC02g11404 Brassica carinata HOM05D000675 ORTHO05D002086 3.0e-06 55.1 61 42.6
BcaC05g27596 Brassica carinata HOM05D000675 ORTHO05D002086 3.0e-06 55.1 80 37.5
C02p40190 Brassica napus HOM05D000675 ORTHO05D002086 3.0e-06 55.1 63 39.7
BcaB05g22457 Brassica carinata HOM05D007462 ORTHO05D002086 4.0e-06 54.7 65 43.1
BcaC03g15594 Brassica carinata HOM05D000675 ORTHO05D002086 4.0e-06 54.7 96 35.4
BcaC05g29029 Brassica carinata HOM05D000675 ORTHO05D002086 4.0e-06 54.7 90 34.4
BraA01t02729Z Brassica rapa HOM05D007462 ORTHO05D002086 4.0e-06 54.7 67 41.8
BcaC01g02140 Brassica carinata HOM05D007462 ORTHO05D002086 5.2e-06 54.3 66 42.4
BcaC05g25703 Brassica carinata HOM05D000675 ORTHO05D002086 5.2e-06 54.3 96 34.4
BcaC06g36027 Brassica carinata HOM05D007462 ORTHO05D002086 5.2e-06 54.3 66 42.4
BcaC08g42855 Brassica carinata HOM05D000675 ORTHO05D002086 5.2e-06 54.3 96 34.4
BcaC08g42872 Brassica carinata HOM05D007462 ORTHO05D011074 5.2e-06 54.3 76 38.2
BolC3t19061H Brassica oleracea HOM05D007462 ORTHO05D002086 5.2e-06 54.3 66 42.4
BolC4t23471H Brassica oleracea HOM05D007462 ORTHO05D002086 5.2e-06 54.3 53 47.2
BolC4t25850H Brassica oleracea HOM05D000675 ORTHO05D002086 5.2e-06 54.3 77 33.8
BraA02t08314Z Brassica rapa HOM05D007462 ORTHO05D002086 5.2e-06 54.3 67 41.8
BcaB05g24191 Brassica carinata HOM05D000675 ORTHO05D002086 6.8e-06 53.9 78 39.7
BcaC02g07772 Brassica carinata HOM05D007462 ORTHO05D002086 6.8e-06 53.9 66 42.4
BcaC03g14955 Brassica carinata HOM05D007462 ORTHO05D002086 6.8e-06 53.9 66 42.4
BcaC09g49265 Brassica carinata HOM05D007462 ORTHO05D002086 6.8e-06 53.9 74 39.2
AL8G21820 Arabidopsis lyrata HOM05D007774 ORTHO05D000309 8.8e-06 53.5 48 47.9
BcaB04g20307 Brassica carinata HOM05D007462 ORTHO05D002086 8.8e-06 53.5 60 45.0
BcaB08g35719 Brassica carinata HOM05D007693 ORTHO05D002086 8.8e-06 53.5 53 45.3
BcaC05g28128 Brassica carinata HOM05D007462 ORTHO05D002086 8.8e-06 53.5 67 43.3
BcaC08g44362 Brassica carinata HOM05D000675 ORTHO05D002086 8.8e-06 53.5 70 37.1
A03p66350 Brassica napus HOM05D000675 ORTHO05D002086 8.8e-06 53.5 74 33.8
A04p09970 Brassica napus HOM05D000675 ORTHO05D024350 8.8e-06 53.5 73 39.7
BraA04t16658Z Brassica rapa HOM05D000675 ORTHO05D024350 8.8e-06 53.5 73 39.7


User provided reference genes

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