Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10029279m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 5.1e-38 160.6 82 100.0
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 6.9e-19 97.1 60 86.7
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 3.8e-17 91.3 60 81.7
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 8.4e-17 90.1 60 78.3
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 8.4e-17 90.1 60 80.0
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 9.3e-16 86.7 57 77.2
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 3.5e-15 84.7 57 75.4
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 7.9e-15 83.6 57 73.7
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 7.9e-15 83.6 57 75.4
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 3.4e-10 68.2 83 48.2
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 2.9e-09 65.1 54 61.1
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 3.8e-09 64.7 56 58.9
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 8.4e-09 63.5 79 48.1
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 8.4e-09 63.5 56 58.9
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 1.1e-08 63.2 56 57.1
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 1.1e-08 63.2 58 56.9
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 1.4e-08 62.8 55 58.2
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 1.9e-08 62.4 56 57.1
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 3.2e-08 61.6 57 54.4
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 4.2e-08 61.2 58 56.9
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 1.6e-07 59.3 54 55.6
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 2.1e-07 58.9 57 52.6
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 2.1e-07 58.9 55 52.7
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 2.7e-07 58.5 53 56.6
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 2.7e-07 58.5 57 50.9
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 3.5e-07 58.2 54 55.6
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 3.5e-07 58.2 71 46.5
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 3.5e-07 58.2 54 55.6
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 4.6e-07 57.8 61 50.8
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 6.1e-07 57.4 57 52.6
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 6.1e-07 57.4 70 45.7
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 7.9e-07 57.0 58 50.0
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 7.9e-07 57.0 54 53.7
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 7.9e-07 57.0 54 53.7
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 7.9e-07 57.0 58 53.4
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 1.0e-06 56.6 55 56.4
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 1.0e-06 56.6 54 51.9
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 1.0e-06 56.6 62 50.0
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 1.0e-06 56.6 62 50.0
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 1.3e-06 56.2 53 54.7
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 1.3e-06 56.2 54 51.9
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 1.8e-06 55.8 54 53.7
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 1.8e-06 55.8 55 50.9
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 2.3e-06 55.5 74 43.2
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 3.0e-06 55.1 54 51.9
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 3.0e-06 55.1 70 45.7
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 3.0e-06 55.1 54 53.7
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 3.0e-06 55.1 61 49.2
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 3.0e-06 55.1 80 41.2
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 3.9e-06 54.7 54 50.0
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 3.9e-06 54.7 54 53.7
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 3.9e-06 54.7 55 49.1
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 3.9e-06 54.7 54 55.6
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 3.9e-06 54.7 55 47.3
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 3.9e-06 54.7 55 49.1
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 6.7e-06 53.9 60 45.0
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 8.7e-06 53.5 54 53.7
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 8.7e-06 53.5 55 50.9


User provided reference genes

Program Settings