Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10029253m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 4.0e-77 291.6 173 100.0
AL6G49180 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 3.9e-64 248.4 166 88.0
Sp6g03590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 5.1e-64 248.1 165 83.0
AT4G03600 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 4.3e-63 245.0 164 83.5
Aa31LG5G2950 Aethionema arabicum HOM05D003772 ORTHO05D004509 1.5e-60 236.5 157 83.4
Carub.0001s0283 Capsella rubella HOM05D003772 ORTHO05D004509 1.3e-59 233.4 175 77.1
Aa31LG1G8940 Aethionema arabicum HOM05D003772 ORTHO05D004509 2.2e-59 232.6 164 77.4
CARHR003060 Cardamine hirsuta HOM05D003772 ORTHO05D004509 2.9e-59 232.3 172 77.3
Sp1g02590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 6.5e-59 231.1 164 80.5
THA.LOC104801171 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 1.4e-58 229.9 175 73.1
AL1G13270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 1.9e-58 229.6 157 82.2
AT1G03730 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 1.9e-58 229.6 157 82.2
BcaC07g42231 Brassica carinata HOM05D003772 ORTHO05D004509 1.6e-57 226.5 157 82.2
BcaC07g42232 Brassica carinata HOM05D003772 ORTHO05D004509 1.6e-57 226.5 157 82.2
BcaC07g42237 Brassica carinata HOM05D003772 ORTHO05D004509 3.5e-57 225.3 157 81.5
C08p52680 Brassica napus HOM05D003772 ORTHO05D004509 3.5e-57 225.3 157 81.5
BolC8t52794H Brassica oleracea HOM05D003772 ORTHO05D004509 3.5e-57 225.3 157 81.5
A09p68240 Brassica napus HOM05D003772 ORTHO05D004509 4.6e-57 224.9 157 81.5
BraA09t42159Z Brassica rapa HOM05D003772 ORTHO05D004509 4.6e-57 224.9 157 81.5
Thhalv10008772m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 4.6e-57 224.9 157 80.9
Atru.chr6.2987 Acer truncatum HOM05D003772 ORTHO05D004509 2.3e-48 196.1 152 71.7
Manes.12G089142 Manihot esculenta HOM05D003772 ORTHO05D004509 2.3e-48 196.1 163 66.9
PGR042G2646 Punica granatum HOM05D003772 ORTHO05D004509 1.1e-47 193.7 161 64.6
Manes.13G145756 Manihot esculenta HOM05D003772 ORTHO05D004509 1.9e-47 193.0 165 66.1
Manes.13G145808 Manihot esculenta HOM05D003772 ORTHO05D004509 1.9e-47 193.0 165 66.1
Ciclev10016940m.g Citrus clementina HOM05D003772 ORTHO05D004509 4.3e-47 191.8 161 68.9
Manes.13G145890 Manihot esculenta HOM05D003772 ORTHO05D004509 2.2e-46 189.5 165 65.5
TWI59G0493 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 2.8e-46 189.1 152 67.8
Duzib248G0440 Durio zibethinus HOM05D003772 ORTHO05D004509 6.3e-46 188.0 160 63.8
COL.COLO4_30203 Corchorus olitorius HOM05D003772 ORTHO05D004509 8.2e-46 187.6 157 66.2
Manes.13G145815 Manihot esculenta HOM05D003772 ORTHO05D004509 8.2e-46 187.6 165 64.8
Manes.13G146061 Manihot esculenta HOM05D003772 ORTHO05D004509 8.2e-46 187.6 165 64.8
RcHm_v2.0_Chr2g0126711 Rosa chinensis HOM05D003772 ORTHO05D004509 8.2e-46 187.6 154 66.2
Gorai.005G201000 Gossypium raimondii HOM05D003772 ORTHO05D004509 1.8e-45 186.4 153 69.3
Manes.13G145811 Manihot esculenta HOM05D003772 ORTHO05D004509 1.8e-45 186.4 165 64.2
Potri.013G130300 Populus trichocarpa HOM05D003772 ORTHO05D004509 1.8e-45 186.4 152 66.4
Thecc.02G180700 Theobroma cacao HOM05D003772 ORTHO05D004509 2.4e-45 186.0 154 66.2
CsaV3_7G004480 Cucumis sativus L. HOM05D003772 ORTHO05D004509 4.1e-45 185.3 157 63.1
FAN09G0390 Fragaria x ananassa HOM05D003772 ORTHO05D004509 5.3e-45 184.9 151 67.5
Gohir.A03G156100 Gossypium hirsutum HOM05D003772 ORTHO05D004509 5.3e-45 184.9 151 69.5
TWI14G0986 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 5.3e-45 184.9 151 65.6
Haze_13171 Corylus avellana HOM05D003772 ORTHO05D004509 6.9e-45 184.5 143 70.6
MELO3C018731.2 Cucumis melo HOM05D003772 ORTHO05D004509 6.9e-45 184.5 157 63.1
ClCG00G003560 Citrullus lanatus HOM05D003772 ORTHO05D004509 9.0e-45 184.1 157 63.1
ClCG07G002860 Citrullus lanatus HOM05D003772 ORTHO05D004509 9.0e-45 184.1 157 63.1
Duzib132G0444 Durio zibethinus HOM05D003772 ORTHO05D004509 9.0e-45 184.1 158 63.9
FvH4_6g26280 Fragaria vesca HOM05D003772 ORTHO05D004509 9.0e-45 184.1 150 68.0
FAN02G3561 Fragaria x ananassa HOM05D003772 ORTHO05D004509 9.0e-45 184.1 150 68.0
FAN05G4300 Fragaria x ananassa HOM05D003772 ORTHO05D004509 9.0e-45 184.1 150 68.0
MD09G1246800 Malus domestica HOM05D003772 ORTHO05D004509 9.0e-45 184.1 158 64.6
Gohir.D02G179200 Gossypium hirsutum HOM05D003772 ORTHO05D004509 1.2e-44 183.7 151 68.9
TWI23G0933 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 1.2e-44 183.7 154 65.6
Lj3g0023444 Lotus japonicus HOM05D003772 ORTHO05D004509 4.5e-44 181.8 156 64.1
Medtr4g078240 Medicago truncatula HOM05D003772 ORTHO05D004509 4.5e-44 181.8 156 62.8
Sed0018072 Sechium edule HOM05D003772 ORTHO05D004509 2.9e-43 179.1 158 65.2
Duzib052G1162 Durio zibethinus HOM05D003772 ORTHO05D004509 3.8e-43 178.7 154 63.6
Glyma.13G296500 Glycine max HOM05D003772 ORTHO05D004509 5.0e-43 178.3 155 63.2
Lalb_Chr03g0029491 Lupinus albus HOM05D003772 ORTHO05D004509 6.5e-43 177.9 154 61.0
MD17G1239700 Malus domestica HOM05D003772 ORTHO05D004509 1.1e-42 177.2 151 64.2
TPR.G28019 Trifolium pratense HOM05D003772 ORTHO05D004509 1.1e-42 177.2 156 61.5
Glyma.12G113500 Glycine max HOM05D003772 ORTHO05D004509 1.9e-42 176.4 158 60.8
Glyma.06G292300 Glycine max HOM05D003772 ORTHO05D004509 4.2e-42 175.3 154 61.7
Glyma.12G204900 Glycine max HOM05D003772 ORTHO05D004509 4.2e-42 175.3 159 59.7
VMungo1080G0856 Vigna mungo HOM05D003772 ORTHO05D004509 4.2e-42 175.3 155 63.2
BcaNung01575 Brassica carinata HOM05D003772 ORTHO05D004509 9.4e-42 174.1 158 62.0
Phvul.011G119000 Phaseolus vulgaris HOM05D003772 ORTHO05D004509 9.4e-42 174.1 160 60.6
Lalb_Chr19g0135261 Lupinus albus HOM05D003772 ORTHO05D004509 1.6e-41 173.3 158 59.5
VMungo1127G0003 Vigna mungo HOM05D003772 ORTHO05D004509 2.1e-41 172.9 158 61.4
MSTRG.14329 Avicennia marina HOM05D003772 ORTHO05D004509 2.7e-41 172.6 149 63.1
MSTRG.14330 Avicennia marina HOM05D003772 ORTHO05D004509 2.7e-41 172.6 149 63.1
Gohir.A01G016500 Gossypium hirsutum HOM05D003772 ORTHO05D004509 2.7e-41 172.6 158 60.8
Thhalv10026455m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 3.6e-41 172.2 154 61.0
AL7G24270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 4.6e-41 171.8 154 60.4
AT4G28330 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 4.6e-41 171.8 158 60.8
BcaC09g50489 Brassica carinata HOM05D003772 ORTHO05D004509 6.1e-41 171.4 158 60.8
C01p24810 Brassica napus HOM05D003772 ORTHO05D004509 6.1e-41 171.4 158 60.8
Hma1.2p1_0002F.1_g001920 Hydrangea macrophylla HOM05D003772 ORTHO05D004509 7.9e-41 171.0 147 63.9
A01p19750 Brassica napus HOM05D003772 ORTHO05D004509 1.0e-40 170.6 158 60.8
BraA01t01906Z Brassica rapa HOM05D003772 ORTHO05D004509 1.0e-40 170.6 158 60.8
Carub.0007s1242 Capsella rubella HOM05D003772 ORTHO05D004509 1.4e-40 170.2 154 60.4
Migut.F01269 Erythranthe guttata HOM05D003772 ORTHO05D004509 2.3e-40 169.5 148 61.5
THA.LOC104804060 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 2.3e-40 169.5 165 59.4
Dinv26410 Davidia involucrata HOM05D000001 ORTHO05D004509 3.0e-40 169.1 158 57.0
Sp7g26290 Schrenkiella parvula HOM05D003772 ORTHO05D004509 3.0e-40 169.1 154 60.4
Prupe.3G132300 Prunus persica HOM05D003772 ORTHO05D004509 6.7e-40 167.9 143 65.0
SGA_v2.0_scaffold109G31121 Striga asiatica HOM05D003772 ORTHO05D004509 6.7e-40 167.9 167 57.5
Peaxi162Scf00132g00006 Petunia axillaris HOM05D003772 ORTHO05D004509 8.8e-40 167.5 156 58.3
CARHR236040 Cardamine hirsuta HOM05D003772 ORTHO05D004509 1.1e-39 167.2 158 60.8
AT4G28340 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 1.5e-39 166.8 163 56.4
Psat0s2365g0040 Pisum sativum HOM05D003772 ORTHO05D004509 1.5e-39 166.8 147 63.9
Cc05_g07210 Coffea canephora HOM05D003772 ORTHO05D004509 3.3e-39 165.6 158 59.5
A08p20120 Brassica napus HOM05D003772 ORTHO05D004509 4.3e-39 165.2 147 61.9
BraA08t33971Z Brassica rapa HOM05D003772 ORTHO05D004509 4.3e-39 165.2 147 61.9
Lsat_1_v5_gn_4_66640 Lactuca sativa HOM05D003772 ORTHO05D004509 5.7e-39 164.9 162 58.0
PGSC0003DMG400018339 Solanum tuberosum HOM05D003772 ORTHO05D004509 5.7e-39 164.9 157 58.0
SGA_v2.0_scaffold322G48628 Striga asiatica HOM05D003772 ORTHO05D004509 7.4e-39 164.5 151 58.9
DCAR_021247 Daucus carota HOM05D003772 ORTHO05D004509 1.3e-38 163.7 148 61.5
Lj8P111T15 Lonicera japonica HOM05D003772 ORTHO05D004509 1.3e-38 163.7 152 59.9
Gohir.D01G016600 Gossypium hirsutum HOM05D003772 ORTHO05D004509 2.8e-38 162.5 152 61.8
Nn1g06533 Nelumbo nucifera HOM05D003772 ORTHO05D004509 4.8e-38 161.8 151 57.6
Peaxi162Scf00059g00193 Petunia axillaris HOM05D003772 ORTHO05D004509 4.8e-38 161.8 165 52.7
Gorai.002G018300 Gossypium raimondii HOM05D003772 ORTHO05D004509 6.3e-38 161.4 149 61.7
Aqoxy1G02411 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 1.1e-37 160.6 146 56.8
Solyc07g053930.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 1.1e-37 160.6 156 57.7
Aa31LG2G22190 Aethionema arabicum HOM05D003772 ORTHO05D004509 1.4e-37 160.2 154 57.1
EL10Ac9g20774 Beta vulgaris HOM05D003772 ORTHO05D004509 1.4e-37 160.2 152 60.5
Actinidia11078 Actinidia chinensis HOM05D003772 ORTHO05D004509 2.4e-37 159.5 152 59.9
SHI10396 Sapria himalayana HOM05D003772 ORTHO05D004509 2.4e-37 159.5 150 58.0
unitig_62.g23166 Utricularia gibba HOM05D003772 ORTHO05D004509 2.4e-37 159.5 163 52.8
TAR626G1598 Trochodendron aralioides HOM05D003772 ORTHO05D004509 4.1e-37 158.7 144 61.8
CSS0030564 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 5.3e-37 158.3 144 59.0
HanXRQChr05g0130551 Helianthus annuus HOM05D003772 ORTHO05D004509 6.9e-37 157.9 154 57.1
CAN.G248.1 Capsicum annuum HOM05D003772 ORTHO05D004509 2.0e-36 156.4 154 57.1
PSO675G9105 Papaver somniferum HOM05D003772 ORTHO05D004509 2.0e-36 156.4 147 58.5
Oeu007126.1 Olea europaea HOM05D003772 ORTHO05D004509 7.7e-36 154.5 156 59.0
TAR624G0900 Trochodendron aralioides HOM05D003772 ORTHO05D004509 1.7e-35 153.3 157 55.4
Nn1g04097 Nelumbo nucifera HOM05D003772 ORTHO05D004509 3.8e-35 152.1 139 59.7
AUR62042887 Chenopodium quinoa HOM05D003772 ORTHO05D004509 8.5e-35 151.0 143 61.5
Sabra13G0108200 Salix brachista HOM05D003772 ORTHO05D004509 1.1e-34 150.6 141 60.3
Sopen07g027910 Solanum pennellii HOM05D003772 ORTHO05D004509 1.1e-34 150.6 141 59.6
CSS0009217 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 3.2e-34 149.1 140 59.3
HPP92_021377 Vanilla planifolia HOM05D003772 ORTHO05D004509 5.5e-34 148.3 158 55.7
HanXRQChr05g0143311 Helianthus annuus HOM05D003772 ORTHO05D004509 7.9e-33 144.4 150 54.7
CSS0020254 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 2.3e-32 142.9 137 59.1
DCAR_013015 Daucus carota HOM05D003772 ORTHO05D004509 2.3e-32 142.9 142 57.0
Solyc10g008310.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 3.0e-32 142.5 153 53.6
PGSC0003DMG400013145 Solanum tuberosum HOM05D003772 ORTHO05D004509 3.0e-32 142.5 154 52.6
ATR0824G095 Amborella trichopoda HOM05D003772 ORTHO05D004509 3.9e-32 142.1 149 55.0
Oeu017493.1 Olea europaea HOM05D003772 ORTHO05D004509 9.7e-31 137.5 161 51.6
Lalb_Chr22g0356581 Lupinus albus HOM05D003772 ORTHO05D004509 2.2e-30 136.3 154 51.3
PSO541G0621 Papaver somniferum HOM05D003772 ORTHO05D004509 3.7e-30 135.6 130 57.7
Eucgr.A01826 Eucalyptus grandis HOM05D003772 ORTHO05D004509 4.8e-30 135.2 158 50.6
Zm00001eb163400 Zea mays HOM05D003772 ORTHO05D004509 1.1e-29 134.0 164 53.0
BcaC07g38325 Brassica carinata HOM05D003772 ORTHO05D004509 1.8e-29 133.3 147 52.4
C08p10800 Brassica napus HOM05D003772 ORTHO05D004509 1.8e-29 133.3 147 52.4
MBI06_g33538_MAGBIO Magnolia biondii HOM05D003772 ORTHO05D004509 1.8e-29 133.3 149 51.0
Cfa014621 Carpinus fangiana HOM05D003772 ORTHO05D004509 3.1e-29 132.5 91 76.9
CiPaw.03G178000 Carya illinoinensis HOM05D003772 ORTHO05D004509 4.1e-29 132.1 156 51.3
CSS0025212 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 1.5e-28 130.2 127 59.1
Os12g0295600 Oryza sativa ssp. japonica HOM05D003772 ORTHO05D004509 2.2e-27 126.3 153 51.6
QL08p038995 Quercus lobata HOM05D003772 ORTHO05D004509 6.5e-27 124.8 96 67.7
HPP92_020246 Vanilla planifolia HOM05D003772 ORTHO05D004509 1.5e-26 123.6 160 50.6
Ah.11g049030 Amaranthus hybridus HOM05D003772 ORTHO05D004509 7.2e-26 121.3 124 55.6
BolC8t48755H Brassica oleracea HOM05D003772 ORTHO05D004509 9.4e-26 120.9 148 51.4
Nitab4.5_0011784g0020 Nicotiana tabacum HOM05D003772 ORTHO05D004509 9.4e-26 120.9 135 54.1
Nitab4.5_0000638g0260 Nicotiana tabacum HOM05D003772 ORTHO05D004509 4.7e-25 118.6 90 70.0
Nitab4.5_0014741g0030 Nicotiana tabacum HOM05D003772 ORTHO05D004509 1.8e-24 116.7 91 67.0
HanXRQChr17g0555101 Helianthus annuus HOM05D003772 ORTHO05D004509 1.1e-23 114.0 144 49.3
Nn2g11445 Nelumbo nucifera HOM05D003772 ORTHO05D004509 2.0e-23 113.2 135 46.7
CSS0031333 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 2.6e-23 112.8 93 67.7
Lsat_1_v5_gn_8_135800 Lactuca sativa HOM05D003772 ORTHO05D004509 5.7e-23 111.7 155 47.7
PGR142G3565 Punica granatum HOM05D003772 ORTHO05D004509 6.3e-22 108.2 145 49.0
Ah.14g082650 Amaranthus hybridus HOM05D003772 ORTHO05D004509 1.4e-21 107.1 120 51.7
Eucgr.A01824 Eucalyptus grandis HOM05D003772 ORTHO05D004509 1.2e-20 104.0 102 59.8
Eucgr.K01033 Eucalyptus grandis HOM05D003772 ORTHO05D004509 1.0e-19 100.9 144 44.4
CDE09G0587 Ceratophyllum demersum HOM05D003772 ORTHO05D004509 2.9e-19 99.4 135 46.7
Rhsim13G0122200 Rhododendron simsii HOM05D003772 ORTHO05D004509 5.0e-19 98.6 93 60.2
BcaB03g12567 Brassica carinata HOM05D003772 ORTHO05D004509 4.2e-18 95.5 147 46.3
DCAR_019180 Daucus carota HOM05D003772 ORTHO05D004509 1.8e-16 90.1 124 46.0
SalBow8G1020 Salvia bowleyana HOM05D003772 ORTHO05D004509 6.3e-14 81.6 72 58.3
unitig_52.g17351 Utricularia gibba HOM05D003772 ORTHO05D004509 8.3e-14 81.3 75 57.3
Sopen10g004170 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-13 80.5 130 46.2
vmacro00494 Vaccinium macrocarpon HOM05D003772 ORTHO05D004509 3.8e-11 72.4 128 43.8
Nn4g24929 Nelumbo nucifera HOM05D003772 ORTHO05D004509 1.4e-08 63.9 104 40.4
Rhsim06G0141600 Rhododendron simsii HOM05D003772 ORTHO05D004509 2.3e-08 63.2 56 57.1
ECA247G3718 Erigeron canadensis HOM05D000048 ORTHO05D000207 1.5e-07 60.5 74 48.6
Lj5A129G68 Lonicera japonica HOM05D003772 ORTHO05D010346 1.5e-07 60.5 76 50.0
DCAR_021586 Daucus carota HOM05D003772 ORTHO05D004509 2.6e-07 59.7 68 54.4
Nn2g11947 Nelumbo nucifera HOM05D003772 ORTHO05D004509 3.4e-07 59.3 58 60.3
CiPaw.11G020600 Carya illinoinensis HOM05D008378 ORTHO05D010346 4.4e-07 58.9 78 47.4
TWI14G0631 Tripterygium wilfordii HOM05D008378 ORTHO05D010346 5.7e-07 58.5 90 45.6
SalBow6G1615 Salvia bowleyana HOM05D008378 ORTHO05D010346 9.8e-07 57.8 88 48.9
Aqoxy4G00788 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 1.3e-06 57.4 128 30.5
ClCG02G017670 Citrullus lanatus HOM05D003772 ORTHO05D004509 1.3e-06 57.4 76 52.6
HanXRQChr02g0035801 Helianthus annuus HOM05D008378 ORTHO05D010346 1.3e-06 57.4 68 50.0
Hma1.2p1_0046F.1_g027100 Hydrangea macrophylla HOM05D003772 ORTHO05D010346 1.3e-06 57.4 80 45.0
CsaV3_1G001040 Cucumis sativus L. HOM05D000048 ORTHO05D010346 2.2e-06 56.6 86 40.7
PGSC0003DMG400000773 Solanum tuberosum HOM05D001192 ORTHO05D051357 2.2e-06 56.6 42 66.7
CsaV3_6G012890 Cucumis sativus L. HOM05D003772 ORTHO05D004509 2.8e-06 56.2 84 48.8
vmacro19302 Vaccinium macrocarpon HOM05D008378 ORTHO05D010346 3.7e-06 55.8 73 50.7
Zm00001eb405140 Zea mays HOM05D003772 ORTHO05D004509 4.9e-06 55.5 50 56.0
ClCG06G017410 Citrullus lanatus HOM05D008378 ORTHO05D010346 6.3e-06 55.1 80 42.5
MELO3C029768.2 Cucumis melo HOM05D008378 ORTHO05D010346 6.3e-06 55.1 86 39.5
Lsat_1_v5_gn_1_27801 Lactuca sativa HOM05D000048 ORTHO05D000207 6.3e-06 55.1 70 47.1
Rhsim08G0177400 Rhododendron simsii HOM05D008378 ORTHO05D010346 6.3e-06 55.1 91 45.1
PGR083G1326 Punica granatum HOM05D008378 ORTHO05D010346 8.3e-06 54.7 89 41.6
QL10p006910 Quercus lobata HOM05D008378 ORTHO05D010346 8.3e-06 54.7 77 48.1


User provided reference genes

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