Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10029234m.g Eutrema salsugineum HOM05D000480 ORTHO05D000313 3.9e-137 491.5 255 100.0
Thhalv10029125m.g Eutrema salsugineum HOM05D000480 ORTHO05D000313 2.4e-102 375.9 258 78.3
BcaB01g01575 Brassica carinata HOM05D000480 ORTHO05D000313 5.3e-86 321.6 255 70.2
BcaB01g01576 Brassica carinata HOM05D000480 ORTHO05D000313 2.7e-85 319.3 270 65.6
Carub.0006s2975 Capsella rubella HOM05D000480 ORTHO05D000313 6.5e-84 314.7 257 68.1
BcaC03g14172 Brassica carinata HOM05D000480 ORTHO05D000313 2.7e-82 309.3 257 66.5
C02p14460 Brassica napus HOM05D000480 ORTHO05D000313 2.7e-82 309.3 257 66.5
BolC2t07571H Brassica oleracea HOM05D000480 ORTHO05D000313 2.7e-82 309.3 257 66.5
BcaB05g22330 Brassica carinata HOM05D000480 ORTHO05D000313 8.0e-82 307.8 256 67.2
BraA09t38388Z Brassica rapa HOM05D000480 ORTHO05D000313 8.0e-82 307.8 245 67.8
CARHR255620 Cardamine hirsuta HOM05D000480 ORTHO05D000313 1.5e-80 303.5 260 65.0
BcaC03g14171 Brassica carinata HOM05D000480 ORTHO05D000313 1.2e-77 293.9 257 64.2
C02p14440 Brassica napus HOM05D000480 ORTHO05D000313 1.2e-77 293.9 257 64.2
BolC2t07568H Brassica oleracea HOM05D000480 ORTHO05D000313 1.2e-77 293.9 257 64.2
C08p49550 Brassica napus HOM05D000480 ORTHO05D000313 1.3e-76 290.4 255 61.6
C08p49600 Brassica napus HOM05D000480 ORTHO05D000313 1.3e-76 290.4 255 61.6
AT4G11000 Arabidopsis thaliana HOM05D000480 ORTHO05D000313 2.5e-75 286.2 243 65.4
A09p65550 Brassica napus HOM05D000480 ORTHO05D000313 2.5e-75 286.2 255 61.6
BraA09t41900Z Brassica rapa HOM05D000480 ORTHO05D000313 3.3e-75 285.8 255 61.6
BcaC07g41900 Brassica carinata HOM05D000480 ORTHO05D000313 7.2e-75 284.6 255 61.2
BolC8t52491H Brassica oleracea HOM05D000480 ORTHO05D000313 7.2e-75 284.6 255 61.2
CARHR223630 Cardamine hirsuta HOM05D000480 ORTHO05D000313 3.4e-72 275.8 258 60.1
Thhalv10028682m.g Eutrema salsugineum HOM05D000480 ORTHO05D000313 3.2e-70 269.2 188 78.7
A08p20310 Brassica napus HOM05D000480 ORTHO05D000313 5.4e-70 268.5 256 61.7
BcaC06g33522 Brassica carinata HOM05D000480 ORTHO05D000313 2.5e-67 259.6 255 59.6
BcaC06g33534 Brassica carinata HOM05D000480 ORTHO05D000313 2.5e-67 259.6 256 60.2
Thhalv10028610m.g Eutrema salsugineum HOM05D000480 ORTHO05D000313 9.8e-64 247.7 257 58.0
BcaNung04661 Brassica carinata HOM05D000480 ORTHO05D000313 1.3e-63 247.3 255 54.5
BraA09t36340Z Brassica rapa HOM05D000480 ORTHO05D000313 2.7e-61 239.6 245 57.1
Thhalv10027198m.g Eutrema salsugineum HOM05D000480 ORTHO05D000313 1.1e-59 234.2 257 54.5
Aa31LG2G13160 Aethionema arabicum HOM05D000480 ORTHO05D000313 1.8e-57 226.9 240 55.0
C07p48560 Brassica napus HOM05D000480 ORTHO05D000313 4.4e-56 222.2 224 59.4
BcaB04g18386 Brassica carinata HOM05D000480 ORTHO05D000313 3.7e-55 219.2 248 52.4
BolC1t02492H Brassica oleracea HOM05D000480 ORTHO05D000313 7.3e-51 204.9 272 49.6
THA.LOC104799245 Tarenaya hassleriana HOM05D000480 ORTHO05D000313 1.4e-49 200.7 258 46.1
THA.LOC104820697 Tarenaya hassleriana HOM05D000480 ORTHO05D000313 4.9e-47 192.2 265 44.9
BolC7t45364H Brassica oleracea HOM05D000480 ORTHO05D000313 1.9e-43 180.3 172 59.9
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 2.1e-42 176.8 165 59.4
Thhalv10029310m.g Eutrema salsugineum HOM05D000480 ORTHO05D000313 5.8e-40 168.7 93 94.6
BcaC06g33524 Brassica carinata HOM05D000480 ORTHO05D000313 6.4e-39 165.2 188 49.5
THA.LOC104827414 Tarenaya hassleriana HOM05D000480 ORTHO05D000313 1.5e-35 154.1 255 39.6
A09p60940 Brassica napus HOM05D000480 ORTHO05D000313 4.0e-33 146.0 150 56.0
BraA09t41467Z Brassica rapa HOM05D000480 ORTHO05D000313 4.0e-33 146.0 150 56.0
BcaNung04662 Brassica carinata HOM05D000480 ORTHO05D000313 6.4e-31 138.7 158 52.5
BcaNung00129 Brassica carinata HOM05D000480 ORTHO05D000313 8.4e-31 138.3 166 48.8
BcaC06g33526 Brassica carinata HOM05D000480 ORTHO05D000313 4.2e-30 136.0 155 52.9
Thecc.03G241000 Theobroma cacao HOM05D000480 ORTHO05D000313 1.7e-28 130.6 269 37.9
BcaNung03735 Brassica carinata HOM05D000480 ORTHO05D000313 2.3e-28 130.2 257 40.1
C01p25400 Brassica napus HOM05D000480 ORTHO05D000313 3.3e-27 126.3 153 51.6
Thhalv10029390m.g Eutrema salsugineum HOM05D000480 ORTHO05D000313 9.6e-27 124.8 141 53.9
Duzib205G1806 Durio zibethinus HOM05D000480 ORTHO05D000313 1.6e-26 124.0 268 35.4
Duzib205G0304 Durio zibethinus HOM05D000480 ORTHO05D000313 2.8e-26 123.2 268 35.4
Gorai.008G231200 Gossypium raimondii HOM05D000480 ORTHO05D000313 6.9e-25 118.6 266 35.3
Thecc.03G241100 Theobroma cacao HOM05D000480 ORTHO05D000313 1.2e-24 117.9 269 35.3
Gohir.D12G215600 Gossypium hirsutum HOM05D000480 ORTHO05D000313 3.4e-24 116.3 266 35.0
BcaNung04660 Brassica carinata HOM05D000480 ORTHO05D000313 5.8e-24 115.5 158 45.6
BraA01t01952Z Brassica rapa HOM05D000480 ORTHO05D000313 9.9e-24 114.8 114 58.8
COL.COLO4_07198 Corchorus olitorius HOM05D000480 ORTHO05D000313 4.9e-23 112.5 249 37.3
Gohir.A12G213100 Gossypium hirsutum HOM05D000480 ORTHO05D000313 4.9e-23 112.5 266 34.6
Gorai.003G178500 Gossypium raimondii HOM05D000480 ORTHO05D000313 6.4e-23 112.1 241 35.3
Atru.chr11.181 Acer truncatum HOM05D000480 ORTHO05D000313 4.2e-22 109.4 259 33.6
Gohir.A03G003850 Gossypium hirsutum HOM05D000480 ORTHO05D000313 1.3e-20 104.4 199 37.2
Thecc.03G241400 Theobroma cacao HOM05D000480 ORTHO05D000313 9.6e-19 98.2 265 30.9
BcaC06g33527 Brassica carinata HOM05D000480 ORTHO05D000313 5.3e-17 92.4 94 52.1
Gohir.D03G168550 Gossypium hirsutum HOM05D000480 ORTHO05D000313 1.1e-14 84.7 133 40.6
Eucgr.D00030 Eucalyptus grandis HOM05D000480 ORTHO05D000313 2.5e-14 83.6 214 33.6
Manes.01G088000 Manihot esculenta HOM05D000480 ORTHO05D000313 7.1e-14 82.0 247 30.0
THA.LOC104808351 Tarenaya hassleriana HOM05D000480 ORTHO05D000313 9.3e-14 81.6 113 39.8
Eucgr.D00949 Eucalyptus grandis HOM05D000480 ORTHO05D000313 2.1e-13 80.5 219 32.0
COL.COLO4_07197 Corchorus olitorius HOM05D000448 ORTHO05D000313 1.0e-12 78.2 124 41.9
Eucgr.H05144 Eucalyptus grandis HOM05D000480 ORTHO05D000313 1.0e-12 78.2 133 40.6
Eucgr.L01133 Eucalyptus grandis HOM05D000480 ORTHO05D000313 1.0e-12 78.2 219 31.1
Eucgr.E01868 Eucalyptus grandis HOM05D000480 ORTHO05D000313 3.0e-12 76.6 224 32.1
BcaNung04663 Brassica carinata HOM05D000480 ORTHO05D000313 3.9e-12 76.3 84 53.6
Eucgr.E01798 Eucalyptus grandis HOM05D000480 ORTHO05D000313 8.7e-12 75.1 227 32.6
MBI14_g28629_MAGBIO Magnolia biondii HOM05D000448 ORTHO05D000291 1.3e-10 71.2 263 27.8
BolC2t10237H Brassica oleracea HOM05D000480 ORTHO05D000313 2.8e-10 70.1 67 56.7
Actinidia03546 Actinidia chinensis HOM05D000448 ORTHO05D000291 6.3e-10 68.9 271 27.7
Cc09_g09270 Coffea canephora HOM05D000009 ORTHO05D000313 1.4e-09 67.8 239 32.2
Eucgr.H05145 Eucalyptus grandis HOM05D000480 ORTHO05D000313 1.4e-09 67.8 132 38.6
Hma1.2p1_0196F.1_g085070 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 1.4e-09 67.8 249 30.9
Eucgr.L00121 Eucalyptus grandis HOM05D000480 ORTHO05D000313 1.8e-09 67.4 215 31.6
Gohir.D03G168400 Gossypium hirsutum HOM05D000480 ORTHO05D000313 2.4e-09 67.0 204 32.4
Eucgr.E01844 Eucalyptus grandis HOM05D000480 ORTHO05D000313 5.3e-09 65.9 206 32.0
PGR031G3410 Punica granatum HOM05D000480 ORTHO05D000313 5.3e-09 65.9 270 28.9
Gorai.003G178300 Gossypium raimondii HOM05D000480 ORTHO05D000313 6.9e-09 65.5 230 30.4
Actinidia29316 Actinidia chinensis HOM05D000448 ORTHO05D000291 1.2e-08 64.7 276 27.5
FvH4_2g31330 Fragaria vesca HOM05D000448 ORTHO05D000291 1.2e-08 64.7 260 28.1
Cfa010311 Carpinus fangiana HOM05D000480 ORTHO05D000313 1.5e-08 64.3 179 32.4
Glyma.06G237900 Glycine max HOM05D000480 ORTHO05D000313 1.5e-08 64.3 139 34.5
Eucgr.L00132 Eucalyptus grandis HOM05D000480 ORTHO05D000313 2.0e-08 63.9 226 29.2
Gohir.A03G004000 Gossypium hirsutum HOM05D000480 ORTHO05D000313 2.0e-08 63.9 238 30.3
Nn6g33764 Nelumbo nucifera HOM05D000448 ORTHO05D000291 2.0e-08 63.9 229 27.1
Dinv25120 Davidia involucrata HOM05D000480 ORTHO05D000313 2.6e-08 63.5 250 29.2
QL01p008896 Quercus lobata HOM05D000480 ORTHO05D000313 2.6e-08 63.5 243 29.2
CARHR109980 Cardamine hirsuta HOM05D001513 ORTHO05D001494 3.4e-08 63.2 49 69.4
Lj8C490T2 Lonicera japonica HOM05D000448 ORTHO05D000291 3.4e-08 63.2 236 28.8
Dinv25133 Davidia involucrata HOM05D002840 ORTHO05D003088 5.8e-08 62.4 222 31.5
PGR031G3286 Punica granatum HOM05D000480 ORTHO05D000313 5.8e-08 62.4 269 29.4
Eucgr.G01207 Eucalyptus grandis HOM05D000480 ORTHO05D000313 7.6e-08 62.0 270 27.8
BcaC03g16380 Brassica carinata HOM05D000480 ORTHO05D000313 1.0e-07 61.6 45 68.9
ECA234G0709 Erigeron canadensis HOM05D000448 ORTHO05D000291 1.0e-07 61.6 230 27.4
Eucgr.D00934 Eucalyptus grandis HOM05D000480 ORTHO05D000313 1.3e-07 61.2 234 30.8
Eucgr.L00123 Eucalyptus grandis HOM05D000480 ORTHO05D000313 1.7e-07 60.8 248 27.0
SalBow1G5675 Salvia bowleyana HOM05D000448 ORTHO05D000291 1.7e-07 60.8 102 42.2
Cfa013603 Carpinus fangiana HOM05D000480 ORTHO05D000313 2.9e-07 60.1 265 27.5
Migut.L01539 Erythranthe guttata HOM05D000448 ORTHO05D000291 2.9e-07 60.1 217 30.9
Eucgr.C03074 Eucalyptus grandis HOM05D000448 ORTHO05D000291 2.9e-07 60.1 264 27.7
Lj3g0015410 Lotus japonicus HOM05D000480 ORTHO05D000313 2.9e-07 60.1 144 34.7
Oeu049849.1 Olea europaea HOM05D000480 ORTHO05D000313 2.9e-07 60.1 131 38.2
PSO170G3744 Papaver somniferum HOM05D000448 ORTHO05D000291 2.9e-07 60.1 225 30.2
Sed0012316 Sechium edule HOM05D000480 ORTHO05D000313 2.9e-07 60.1 174 32.2
CAN.G1585.3 Capsicum annuum HOM05D000480 ORTHO05D000313 3.8e-07 59.7 217 31.8
CAN.G712.1 Capsicum annuum HOM05D000448 ORTHO05D000291 3.8e-07 59.7 110 40.9
Dinv25265 Davidia involucrata HOM05D000480 ORTHO05D000313 3.8e-07 59.7 241 27.0
FAN20G1233 Fragaria x ananassa HOM05D000448 ORTHO05D000291 3.8e-07 59.7 260 25.8
Hma1.2p1_2411F.1_g321610 Hydrangea macrophylla HOM05D000480 ORTHO05D000313 3.8e-07 59.7 175 32.0
MBI14_g34694_MAGBIO Magnolia biondii HOM05D000448 ORTHO05D000291 3.8e-07 59.7 226 28.3
QL02p061382 Quercus lobata HOM05D000448 ORTHO05D000291 3.8e-07 59.7 224 30.4
RcHm_v2.0_Chr6g0311491 Rosa chinensis HOM05D000448 ORTHO05D000291 3.8e-07 59.7 236 29.7
Sopen08g017880 Solanum pennellii HOM05D000448 ORTHO05D000291 3.8e-07 59.7 257 26.8
Actinidia27508 Actinidia chinensis HOM05D000448 ORTHO05D000291 5.0e-07 59.3 201 29.4
CSS0014567 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 5.0e-07 59.3 117 35.9
Cc08_g01420 Coffea canephora HOM05D000448 ORTHO05D000291 5.0e-07 59.3 245 27.8
FAN24G3054 Fragaria x ananassa HOM05D000448 ORTHO05D000291 5.0e-07 59.3 238 27.7
Oeu010820.1 Olea europaea HOM05D000448 ORTHO05D000291 5.0e-07 59.3 196 30.6
PGR031G1030 Punica granatum HOM05D000480 ORTHO05D000313 5.0e-07 59.3 196 29.1
Solyc08g062360.3 Solanum lycopersicum HOM05D000448 ORTHO05D000291 5.0e-07 59.3 206 30.1
MSTRG.10528 Avicennia marina HOM05D000448 ORTHO05D000291 6.5e-07 58.9 221 29.9
Hma1.2p1_0231F.1_g097550 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 6.5e-07 58.9 233 30.5
C02p42020 Brassica napus HOM05D000480 ORTHO05D000313 8.4e-07 58.5 85 43.5
Eucgr.L00105 Eucalyptus grandis HOM05D000480 ORTHO05D000313 8.4e-07 58.5 211 29.9
HanXRQChr12g0358821 Helianthus annuus HOM05D000448 ORTHO05D000291 8.4e-07 58.5 275 25.1
Actinidia03310 Actinidia chinensis HOM05D000448 ORTHO05D000291 1.1e-06 58.2 159 32.1
Haze_22225 Corylus avellana HOM05D004991 ORTHO05D006690 1.1e-06 58.2 191 30.4
Dinv01568 Davidia involucrata HOM05D000480 ORTHO05D000313 1.1e-06 58.2 234 30.3
Dinv25166 Davidia involucrata HOM05D000480 ORTHO05D000313 1.1e-06 58.2 243 28.4
Hma1.2p1_1008F.1_g247240 Hydrangea macrophylla HOM05D000480 ORTHO05D000313 1.1e-06 58.2 217 30.4
Peaxi162Scf00565g00821 Petunia axillaris HOM05D000448 ORTHO05D000291 1.1e-06 58.2 245 29.0
Actinidia27564 Actinidia chinensis HOM05D000448 ORTHO05D000291 1.4e-06 57.8 137 33.6
Actinidia29315 Actinidia chinensis HOM05D000448 ORTHO05D000291 1.4e-06 57.8 231 28.6
Lsat_1_v5_gn_5_78720 Lactuca sativa HOM05D000448 ORTHO05D000291 1.4e-06 57.8 256 27.7
Lj2A228T51 Lonicera japonica HOM05D000480 ORTHO05D000313 1.4e-06 57.8 135 34.8
Nitab4.5_0000286g0030 Nicotiana tabacum HOM05D000448 ORTHO05D000291 1.4e-06 57.8 163 31.3
Peaxi162Scf00565g00827 Petunia axillaris HOM05D000448 ORTHO05D000291 1.4e-06 57.8 163 31.9
PGR142G3359 Punica granatum HOM05D000480 ORTHO05D000313 1.4e-06 57.8 257 28.0
SalBow1G3264 Salvia bowleyana HOM05D000448 ORTHO05D000291 1.4e-06 57.8 113 38.9
Solyc08g062330.3 Solanum lycopersicum HOM05D000448 ORTHO05D000291 1.4e-06 57.8 262 27.9
vmacro03798 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 1.4e-06 57.8 267 26.6
Duzib168G1606 Durio zibethinus HOM05D000448 ORTHO05D000291 1.9e-06 57.4 224 29.0
Eucgr.L00452 Eucalyptus grandis HOM05D000448 ORTHO05D000291 1.9e-06 57.4 220 29.1
AUR62041976 Chenopodium quinoa HOM05D000448 ORTHO05D000291 2.5e-06 57.0 196 30.1
Migut.A00098 Erythranthe guttata HOM05D000448 ORTHO05D000291 2.5e-06 57.0 225 25.3
Glyma.12G162927 Glycine max HOM05D000480 ORTHO05D000313 2.5e-06 57.0 139 33.1
Gohir.D08G183500 Gossypium hirsutum HOM05D000480 ORTHO05D000313 2.5e-06 57.0 246 26.8
Hma1.2p1_2573F.1_g324630 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 2.5e-06 57.0 170 30.6
Phvul.011G164100 Phaseolus vulgaris HOM05D000480 ORTHO05D000313 2.5e-06 57.0 242 28.9
THA.LOC104820906 Tarenaya hassleriana HOM05D000480 ORTHO05D000313 2.5e-06 57.0 80 45.0
COL.COLO4_30481 Corchorus olitorius HOM05D000454 ORTHO05D002637 3.2e-06 56.6 201 27.9
Gohir.A08G164900 Gossypium hirsutum HOM05D000480 ORTHO05D000313 3.2e-06 56.6 246 26.8
Gorai.004G192600 Gossypium raimondii HOM05D000480 ORTHO05D000313 3.2e-06 56.6 246 26.8
Oeu003136.1 Olea europaea HOM05D000480 ORTHO05D000313 3.2e-06 56.6 246 29.3
QL01p008862 Quercus lobata HOM05D000480 ORTHO05D000313 3.2e-06 56.6 181 30.9
QL01p009178 Quercus lobata HOM05D000480 ORTHO05D000313 3.2e-06 56.6 199 30.7
Rhsim07G0188200 Rhododendron simsii HOM05D000448 ORTHO05D000291 3.2e-06 56.6 269 25.7
FAN20G0495 Fragaria x ananassa HOM05D000448 ORTHO05D000291 4.2e-06 56.2 229 26.6
QL01p009236 Quercus lobata HOM05D000480 ORTHO05D000313 4.2e-06 56.2 149 30.2
SalBow1G3724 Salvia bowleyana HOM05D000448 ORTHO05D000291 4.2e-06 56.2 111 38.7
MSTRG.12044 Avicennia marina HOM05D000448 ORTHO05D000291 5.5e-06 55.8 220 25.9
Cc08_g01450 Coffea canephora HOM05D000448 ORTHO05D000291 5.5e-06 55.8 202 29.2
FAN27G1920 Fragaria x ananassa HOM05D000448 ORTHO05D000291 5.5e-06 55.8 229 26.6
Gorai.003G176800 Gossypium raimondii HOM05D000480 ORTHO05D000313 5.5e-06 55.8 219 31.1
RcHm_v2.0_Chr2g0094191 Rosa chinensis HOM05D000448 ORTHO05D000291 5.5e-06 55.8 237 30.0
TPR.G13724 Trifolium pratense HOM05D000480 ORTHO05D000313 5.5e-06 55.8 242 28.5
Dinv25130 Davidia involucrata HOM05D000480 ORTHO05D000313 7.2e-06 55.5 255 28.2
Lj7C682G5 Lonicera japonica HOM05D000544 ORTHO05D000291 7.2e-06 55.5 194 30.4
Nn6g35571 Nelumbo nucifera HOM05D000448 ORTHO05D000291 7.2e-06 55.5 288 25.3
PGSC0003DMG400001697 Solanum tuberosum HOM05D000480 ORTHO05D000313 7.2e-06 55.5 143 32.9
TAR375G0700 Trochodendron aralioides HOM05D000480 ORTHO05D000313 7.2e-06 55.5 198 30.8
Cfa012319 Carpinus fangiana HOM05D000480 ORTHO05D000313 9.3e-06 55.1 176 27.8
Eucgr.D01200 Eucalyptus grandis HOM05D000448 ORTHO05D000291 9.3e-06 55.1 107 36.4
Eucgr.L00103 Eucalyptus grandis HOM05D000480 ORTHO05D000313 9.3e-06 55.1 117 34.2
FvH4_2g31340 Fragaria vesca HOM05D000448 ORTHO05D000291 9.3e-06 55.1 229 26.2
FAN15G3761 Fragaria x ananassa HOM05D000448 ORTHO05D000291 9.3e-06 55.1 229 25.3
Phvul.011G163400 Phaseolus vulgaris HOM05D000480 ORTHO05D000313 9.3e-06 55.1 139 30.9
Potri.006G223700 Populus trichocarpa HOM05D000448 ORTHO05D000291 9.3e-06 55.1 177 30.5
QL08p043484 Quercus lobata HOM05D000480 ORTHO05D000313 9.3e-06 55.1 210 27.6
SalBow4G1393 Salvia bowleyana HOM05D000448 ORTHO05D000291 9.3e-06 55.1 155 34.8
PGSC0003DMG400031164 Solanum tuberosum HOM05D000480 ORTHO05D000313 9.3e-06 55.1 141 35.5


User provided reference genes

Program Settings