Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10029196m.g Eutrema salsugineum HOM05D000786 ORTHO05D006216 2.5e-43 178.3 88 100.0
AT4G09890 Arabidopsis thaliana HOM05D000786 ORTHO05D006216 4.5e-40 167.5 88 92.0
AL6G43590 Arabidopsis lyrata HOM05D000786 ORTHO05D006216 9.9e-40 166.4 88 90.9
Carub.0006s2842 Capsella rubella HOM05D000786 ORTHO05D006216 9.9e-40 166.4 88 90.9
BcaC04g20992 Brassica carinata HOM05D000786 ORTHO05D006216 2.2e-39 165.2 88 90.9
CARHR260880 Cardamine hirsuta HOM05D000786 ORTHO05D006216 2.2e-39 165.2 88 90.9
BcaB01g01430 Brassica carinata HOM05D000786 ORTHO05D006216 3.8e-39 164.5 88 90.9
Sp6g07600 Schrenkiella parvula HOM05D000786 ORTHO05D006216 6.4e-39 163.7 88 89.8
Aa31LG9G12090 Aethionema arabicum HOM05D000786 ORTHO05D006216 4.8e-34 147.5 88 85.2
THA.LOC109116395 Tarenaya hassleriana HOM05D000786 ORTHO05D006216 1.1e-27 126.3 87 77.0
Cpa.g.sc49.82 Carica papaya HOM05D000786 ORTHO05D006216 7.9e-21 103.6 94 57.4
CANSAT25G1840 Cannabis sativa HOM05D000786 ORTHO05D006216 7.4e-19 97.1 91 56.0
Duzib116G0195 Durio zibethinus HOM05D000786 ORTHO05D006216 1.6e-18 95.9 94 57.4
Manes.18G094200 Manihot esculenta HOM05D000786 ORTHO05D006216 2.2e-18 95.5 95 56.8
Thecc.08G158200 Theobroma cacao HOM05D000786 ORTHO05D006216 2.2e-18 95.5 94 57.4
RcHm_v2.0_Chr6g0274371 Rosa chinensis HOM05D000786 ORTHO05D006216 2.8e-18 95.1 94 58.5
Potri.005G195800 Populus trichocarpa HOM05D000786 ORTHO05D006216 4.8e-18 94.4 94 55.3
QL02p038248 Quercus lobata HOM05D000786 ORTHO05D006216 2.4e-17 92.0 94 56.4
Cfa018290 Carpinus fangiana HOM05D000786 ORTHO05D006216 4.1e-17 91.3 94 54.3
Haze_17797 Corylus avellana HOM05D000786 ORTHO05D006216 4.1e-17 91.3 94 54.3
FvH4_2g13100 Fragaria vesca HOM05D000786 ORTHO05D006216 4.1e-17 91.3 94 57.4
FAN15G3470 Fragaria x ananassa HOM05D000786 ORTHO05D006216 4.1e-17 91.3 94 57.4
FAN20G2557 Fragaria x ananassa HOM05D000786 ORTHO05D006216 4.1e-17 91.3 94 57.4
FAN24G2413 Fragaria x ananassa HOM05D000786 ORTHO05D006216 4.1e-17 91.3 94 57.4
FAN27G0158 Fragaria x ananassa HOM05D000786 ORTHO05D006216 4.1e-17 91.3 94 57.4
TAR381G0907 Trochodendron aralioides HOM05D000786 ORTHO05D006216 5.3e-17 90.9 94 54.3
Aqoxy5G02027 Aquilegia oxysepala HOM05D000786 ORTHO05D006216 6.9e-17 90.5 88 55.7
Aqoxy5G02029 Aquilegia oxysepala HOM05D000786 ORTHO05D006216 6.9e-17 90.5 88 55.7
COL.COLO4_03364 Corchorus olitorius HOM05D000786 ORTHO05D006216 6.9e-17 90.5 83 57.8
Potri.002G065200 Populus trichocarpa HOM05D000786 ORTHO05D006216 1.2e-16 89.7 83 57.8
GSVIVG01034575001 Vitis vinifera HOM05D000786 ORTHO05D006216 1.2e-16 89.7 93 54.8
Ciclev10003573m.g Citrus clementina HOM05D000786 ORTHO05D006216 1.5e-16 89.4 91 57.1
Prupe.8G039100 Prunus persica HOM05D000786 ORTHO05D006216 1.5e-16 89.4 94 54.3
Gohir.A02G063100 Gossypium hirsutum HOM05D000786 ORTHO05D006216 2.0e-16 89.0 95 51.6
Dinv41045 Davidia involucrata HOM05D000786 ORTHO05D006216 2.6e-16 88.6 89 52.8
Lj5g0026860 Lotus japonicus HOM05D000786 ORTHO05D006216 2.6e-16 88.6 94 52.1
Gohir.D02G068800 Gossypium hirsutum HOM05D000786 ORTHO05D006216 3.4e-16 88.2 94 52.1
CiPaw.15G013200 Carya illinoinensis HOM05D000786 ORTHO05D006216 4.5e-16 87.8 94 53.2
CSS0042693 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D006216 5.9e-16 87.4 94 54.3
Medtr1g098310 Medicago truncatula HOM05D000786 ORTHO05D006216 5.9e-16 87.4 94 54.3
ClCG08G003150 Citrullus lanatus HOM05D000786 ORTHO05D006216 1.0e-15 86.7 94 53.2
Glyma.20G169300 Glycine max HOM05D000786 ORTHO05D006216 1.0e-15 86.7 94 53.2
PGSC0003DMG400025091 Solanum tuberosum HOM05D000786 ORTHO05D006216 1.0e-15 86.7 93 52.7
Atru.chr13.2022 Acer truncatum HOM05D000786 ORTHO05D006216 1.3e-15 86.3 83 56.6
Glyma.10G222300 Glycine max HOM05D000786 ORTHO05D006216 1.3e-15 86.3 94 53.2
MELO3C024975.2 Cucumis melo HOM05D000786 ORTHO05D006216 1.7e-15 85.9 94 53.2
CsaV3_6G002840 Cucumis sativus L. HOM05D000786 ORTHO05D006216 1.7e-15 85.9 94 53.2
TWI34G1146 Tripterygium wilfordii HOM05D000786 ORTHO05D006216 1.7e-15 85.9 94 53.2
Dinv25892 Davidia involucrata HOM05D000786 ORTHO05D006216 2.2e-15 85.5 84 56.0
Peaxi162Scf00360g10014 Petunia axillaris HOM05D000786 ORTHO05D006216 2.2e-15 85.5 94 50.0
Gorai.005G077700 Gossypium raimondii HOM05D000786 ORTHO05D006216 2.9e-15 85.1 83 54.2
Nn5g28813 Nelumbo nucifera HOM05D000786 ORTHO05D006216 2.9e-15 85.1 94 51.1
CSS0019732 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D006216 3.8e-15 84.7 95 50.5
MBI16_g14985_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D006216 5.0e-15 84.3 94 51.1
Actinidia17774 Actinidia chinensis HOM05D000786 ORTHO05D006216 6.5e-15 84.0 94 52.1
ATR0800G011 Amborella trichopoda HOM05D000786 ORTHO05D006216 6.5e-15 84.0 79 58.2
Phvul.007G082800 Phaseolus vulgaris HOM05D000786 ORTHO05D006216 8.5e-15 83.6 94 52.1
Sabra05G0149300 Salix brachista HOM05D000786 ORTHO05D006216 8.5e-15 83.6 83 54.2
TPR.G10805 Trifolium pratense HOM05D000786 ORTHO05D006216 1.4e-14 82.8 94 52.1
Atru.chr4.724 Acer truncatum HOM05D000786 ORTHO05D006216 3.2e-14 81.6 84 50.0
CAN.G495.6 Capsicum annuum HOM05D000786 ORTHO05D006216 4.2e-14 81.3 95 49.5
Cc10_g15160 Coffea canephora HOM05D000786 ORTHO05D006216 4.2e-14 81.3 91 50.5
Glyma.02G079500 Glycine max HOM05D000786 ORTHO05D006216 9.4e-14 80.1 82 52.4
Lsat_1_v5_gn_4_138400 Lactuca sativa HOM05D000786 ORTHO05D006216 9.4e-14 80.1 76 52.6
Eucgr.F02688 Eucalyptus grandis HOM05D000786 ORTHO05D006216 1.2e-13 79.7 93 49.5
MD10G1033400 Malus domestica HOM05D000786 ORTHO05D006216 1.6e-13 79.3 82 53.7
Nn1g06009 Nelumbo nucifera HOM05D000786 ORTHO05D006216 1.6e-13 79.3 94 45.7
Nitab4.5_0000099g0130 Nicotiana tabacum HOM05D000786 ORTHO05D006216 1.6e-13 79.3 92 51.1
PGR119G2557 Punica granatum HOM05D000786 ORTHO05D006216 1.6e-13 79.3 83 54.2
Lj2g0013103 Lotus japonicus HOM05D000786 ORTHO05D006216 2.1e-13 79.0 87 50.6
Hma1.2p1_0529F.1_g173260 Hydrangea macrophylla HOM05D000786 ORTHO05D006216 3.6e-13 78.2 80 55.0
Manes.12G145200 Manihot esculenta HOM05D000786 ORTHO05D006216 4.6e-13 77.8 86 47.7
MSTRG.3817 Avicennia marina HOM05D000786 ORTHO05D006216 6.1e-13 77.4 77 51.9
Migut.L00056 Erythranthe guttata HOM05D000786 ORTHO05D006216 6.1e-13 77.4 77 55.8
HanXRQChr15g0493541 Helianthus annuus HOM05D000786 ORTHO05D006216 6.1e-13 77.4 76 51.3
Rhsim10G0146600 Rhododendron simsii HOM05D000786 ORTHO05D006216 6.1e-13 77.4 81 51.9
Rhsim10G0147300 Rhododendron simsii HOM05D000786 ORTHO05D006216 6.1e-13 77.4 81 51.9
DCAR_011463 Daucus carota HOM05D000786 ORTHO05D006216 7.9e-13 77.0 78 50.0
Lsat_1_v5_gn_9_42040 Lactuca sativa HOM05D000786 ORTHO05D006216 7.9e-13 77.0 89 50.6
Nitab4.5_0005070g0010 Nicotiana tabacum HOM05D000786 ORTHO05D006216 7.9e-13 77.0 93 49.5
Glyma.16G163900 Glycine max HOM05D000786 ORTHO05D006216 1.0e-12 76.6 88 51.1
Ciclev10026866m.g Citrus clementina HOM05D000786 ORTHO05D006216 1.4e-12 76.3 85 50.6
Sc16g0004100 Simmondsia chinensis HOM05D000786 ORTHO05D006216 1.4e-12 76.3 81 49.4
HanXRQChr09g0254011 Helianthus annuus HOM05D000786 ORTHO05D006216 1.8e-12 75.9 76 48.7
Lalb_Chr06g0161691 Lupinus albus HOM05D000786 ORTHO05D006216 1.8e-12 75.9 82 52.4
Phvul.004G091400 Phaseolus vulgaris HOM05D000786 ORTHO05D006216 2.3e-12 75.5 82 51.2
Sed0000205 Sechium edule HOM05D000786 ORTHO05D006216 2.3e-12 75.5 94 47.9
Cc07_g16650 Coffea canephora HOM05D000786 ORTHO05D006216 3.0e-12 75.1 76 50.0
SalBow5G2955 Salvia bowleyana HOM05D000786 ORTHO05D006216 3.0e-12 75.1 77 54.5
unitig_0.g1746 Utricularia gibba HOM05D000786 ORTHO05D006216 3.9e-12 74.7 79 49.4
CSS0001280 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D006216 5.1e-12 74.3 78 50.0
CAN.G1248.27 Capsicum annuum HOM05D000786 ORTHO05D006216 6.7e-12 73.9 76 48.7
Potri.007G077500 Populus trichocarpa HOM05D000786 ORTHO05D006216 6.7e-12 73.9 87 44.8
Sed0024174 Sechium edule HOM05D000786 ORTHO05D006216 6.7e-12 73.9 83 50.6
VMungo0720G1602 Vigna mungo HOM05D000786 ORTHO05D006216 6.7e-12 73.9 71 54.9
ClCG01G015870 Citrullus lanatus HOM05D000786 ORTHO05D006216 8.8e-12 73.6 81 50.6
Ah.05g168150 Amaranthus hybridus HOM05D000786 ORTHO05D006216 1.1e-11 73.2 80 52.5
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 1.5e-11 72.8 89 43.8
Solyc04g051470.1 Solanum lycopersicum HOM05D000786 ORTHO05D006216 1.5e-11 72.8 76 50.0
Sopen04g022850 Solanum pennellii HOM05D000786 ORTHO05D006216 1.5e-11 72.8 76 50.0
SGA_v2.0_scaffold34G13633 Striga asiatica HOM05D000786 ORTHO05D006216 2.0e-11 72.4 78 51.3
Prupe.6G166900 Prunus persica HOM05D000786 ORTHO05D006216 2.5e-11 72.0 86 47.7
AUR62034855 Chenopodium quinoa HOM05D000786 ORTHO05D006216 3.3e-11 71.6 88 50.0
AUR62044756 Chenopodium quinoa HOM05D000786 ORTHO05D006216 3.3e-11 71.6 88 50.0
PGSC0003DMG402019696 Solanum tuberosum HOM05D000786 ORTHO05D006216 3.3e-11 71.6 76 48.7
Lalb_Chr19g0130081 Lupinus albus HOM05D000786 ORTHO05D006216 4.3e-11 71.2 82 48.8
MBI19_g15944_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D006216 4.3e-11 71.2 84 50.0
Oeu028354.1 Olea europaea HOM05D000786 ORTHO05D006216 5.7e-11 70.9 80 51.2
SalBow6G2838 Salvia bowleyana HOM05D000786 ORTHO05D006216 5.7e-11 70.9 94 45.7
FAN19G0145 Fragaria x ananassa HOM05D000786 ORTHO05D006216 7.4e-11 70.5 88 44.3
COL.COLO4_03470 Corchorus olitorius HOM05D000786 ORTHO05D006216 9.7e-11 70.1 88 46.6
FvH4_1g23170 Fragaria vesca HOM05D000786 ORTHO05D006216 9.7e-11 70.1 88 44.3
FAN23G1700 Fragaria x ananassa HOM05D000786 ORTHO05D006216 9.7e-11 70.1 88 44.3
Glyma.06G148000 Glycine max HOM05D000786 ORTHO05D006216 9.7e-11 70.1 83 48.2
Lalb_Chr08g0238761 Lupinus albus HOM05D000786 ORTHO05D006216 9.7e-11 70.1 83 48.2
Os06g0686600 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D006216 9.7e-11 70.1 85 45.9
unitig_747.g21813 Utricularia gibba HOM05D000786 ORTHO05D006216 9.7e-11 70.1 78 48.7
Cfa002784 Carpinus fangiana HOM05D000786 ORTHO05D006216 1.3e-10 69.7 85 47.1
MD15G1335800 Malus domestica HOM05D000786 ORTHO05D006216 1.3e-10 69.7 86 45.3
QL06p031416 Quercus lobata HOM05D000786 ORTHO05D006216 1.3e-10 69.7 84 46.4
FAN26G3223 Fragaria x ananassa HOM05D000786 ORTHO05D006216 2.2e-10 68.9 88 43.2
FAN28G3029 Fragaria x ananassa HOM05D000786 ORTHO05D006216 2.2e-10 68.9 88 43.2
Haze_25081 Corylus avellana HOM05D000786 ORTHO05D006216 3.7e-10 68.2 85 45.9
RcHm_v2.0_Chr2g0117891 Rosa chinensis HOM05D000786 ORTHO05D006216 3.7e-10 68.2 88 43.2
HPP92_027891 Vanilla planifolia HOM05D000786 ORTHO05D006216 4.8e-10 67.8 82 50.0
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 8.2e-10 67.0 86 43.0
CsaV3_6G042150 Cucumis sativus L. HOM05D000786 ORTHO05D006216 8.2e-10 67.0 81 48.1
HPP92_018298 Vanilla planifolia HOM05D000786 ORTHO05D006216 8.2e-10 67.0 82 50.0
MELO3C007453.2 Cucumis melo HOM05D000786 ORTHO05D006216 1.4e-09 66.2 87 44.8
Migut.N03203 Erythranthe guttata HOM05D000786 ORTHO05D006216 1.4e-09 66.2 82 47.6
Oeu015843.1 Olea europaea HOM05D000786 ORTHO05D006216 1.4e-09 66.2 77 45.5
CiPaw.16G009100 Carya illinoinensis HOM05D000786 ORTHO05D006216 3.1e-09 65.1 66 56.1
Zm00001eb225670 Zea mays HOM05D000786 ORTHO05D006216 3.1e-09 65.1 84 42.9
Sabra05G0071600 Salix brachista HOM05D000786 ORTHO05D006216 6.9e-09 63.9 86 41.9
CiPaw.03G131800 Carya illinoinensis HOM05D000786 ORTHO05D006216 9.1e-09 63.5 100 41.0
CDE04G0685 Ceratophyllum demersum HOM05D000786 ORTHO05D006216 1.5e-08 62.8 93 43.0
Sabra07G0065500 Salix brachista HOM05D000786 ORTHO05D006216 1.5e-08 62.8 86 43.0
AagrBONN_evm.TU.Sc2ySwM_228.2913 Anthoceros agrestis HOM05D000786 ORTHO05D000779 2.6e-08 62.0 74 47.3
PSO541G3255 Papaver somniferum HOM05D000786 ORTHO05D006216 3.4e-08 61.6 86 45.3
SMO172G0046 Selaginella moellendorffii HOM05D000786 ORTHO05D000779 1.0e-07 60.1 73 45.2
Dinv02076 Davidia involucrata HOM05D000786 ORTHO05D000779 2.9e-07 58.5 45 60.0
Glyma.04G217900 Glycine max HOM05D000786 ORTHO05D006216 5.0e-07 57.8 83 45.8
Mapoly0050s0122 Marchantia polymorpha HOM05D000786 ORTHO05D000779 5.0e-07 57.8 38 65.8
Peaxi162Scf00025g00337 Petunia axillaris HOM05D000786 ORTHO05D006216 8.5e-07 57.0 76 44.7
Lsat_1_v5_gn_5_143041 Lactuca sativa HOM05D000786 ORTHO05D000779 1.1e-06 56.6 78 41.0
Prupe.3G045700 Prunus persica HOM05D000786 ORTHO05D000779 1.4e-06 56.2 39 59.0
Glyma.06G053300 Glycine max HOM05D000786 ORTHO05D000779 1.9e-06 55.8 38 57.9
MD09G1189600 Malus domestica HOM05D000786 ORTHO05D000779 1.9e-06 55.8 39 59.0
A10p25790 Brassica napus HOM05D000786 ORTHO05D000779 2.5e-06 55.5 76 38.2
VMungo1309G1255 Vigna mungo HOM05D000786 ORTHO05D000779 2.5e-06 55.5 39 56.4
ECA234G0204 Erigeron canadensis HOM05D000786 ORTHO05D000779 3.2e-06 55.1 39 59.0
Glyma.04G052800 Glycine max HOM05D000786 ORTHO05D000779 3.2e-06 55.1 38 57.9
Medtr3g104640 Medicago truncatula HOM05D000786 ORTHO05D000779 3.2e-06 55.1 39 56.4
Thecc.09G085500 Theobroma cacao HOM05D000786 ORTHO05D000779 3.2e-06 55.1 51 51.0
C09p64860 Brassica napus HOM05D000786 ORTHO05D000779 4.2e-06 54.7 76 36.8
MD17G1172800 Malus domestica HOM05D000786 ORTHO05D000779 4.2e-06 54.7 36 63.9
TPR.G3521 Trifolium pratense HOM05D000786 ORTHO05D000779 4.2e-06 54.7 38 57.9
unitig_748.g7530 Utricularia gibba HOM05D000786 ORTHO05D000779 4.2e-06 54.7 78 41.0
GSVIVG01015175001 Vitis vinifera HOM05D000786 ORTHO05D000779 4.2e-06 54.7 39 56.4
AL6G22750 Arabidopsis lyrata HOM05D000786 ORTHO05D000779 5.5e-06 54.3 75 38.7
Ca_21289_v3 Cicer arietinum L. HOM05D000786 ORTHO05D000779 5.5e-06 54.3 49 55.1
Lalb_Chr08g0244991 Lupinus albus HOM05D000786 ORTHO05D000779 5.5e-06 54.3 74 36.5
Lalb_Chr12g0199881 Lupinus albus HOM05D000786 ORTHO05D000779 5.5e-06 54.3 36 66.7
Rhsim04G0232400 Rhododendron simsii HOM05D000786 ORTHO05D000779 5.5e-06 54.3 39 61.5
Actinidia15584 Actinidia chinensis HOM05D001250 ORTHO05D000627 7.2e-06 53.9 39 59.0
Actinidia31889 Actinidia chinensis HOM05D000786 ORTHO05D006216 7.2e-06 53.9 58 48.3
Glyma.17G053400 Glycine max HOM05D000786 ORTHO05D000779 7.2e-06 53.9 37 62.2
Gohir.A07G012700 Gossypium hirsutum HOM05D000786 ORTHO05D000779 7.2e-06 53.9 52 48.1
Gohir.D07G012500 Gossypium hirsutum HOM05D000786 ORTHO05D000779 7.2e-06 53.9 52 48.1
HanXRQChr03g0071471 Helianthus annuus HOM05D000786 ORTHO05D000779 7.2e-06 53.9 59 44.1
Phvul.003G135000 Phaseolus vulgaris HOM05D000786 ORTHO05D000779 7.2e-06 53.9 37 62.2
AT5G11970 Arabidopsis thaliana HOM05D000786 ORTHO05D000779 9.4e-06 53.5 71 39.4
CSS0019123 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D000779 9.4e-06 53.5 38 60.5
FvH4_6g34100 Fragaria vesca HOM05D000786 ORTHO05D000779 9.4e-06 53.5 38 57.9
FAN02G2391 Fragaria x ananassa HOM05D000786 ORTHO05D000779 9.4e-06 53.5 38 57.9
FAN05G1246 Fragaria x ananassa HOM05D000786 ORTHO05D000779 9.4e-06 53.5 38 57.9
FAN09G1232 Fragaria x ananassa HOM05D000786 ORTHO05D000779 9.4e-06 53.5 38 57.9
FAN14G5120 Fragaria x ananassa HOM05D000786 ORTHO05D000779 9.4e-06 53.5 38 57.9
Medtr4g125990 Medicago truncatula HOM05D000786 ORTHO05D000779 9.4e-06 53.5 37 62.2
RcHm_v2.0_Chr2g0144351 Rosa chinensis HOM05D000786 ORTHO05D000779 9.4e-06 53.5 38 57.9


User provided reference genes

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