Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10029192m.g Eutrema salsugineum HOM05D003517 ORTHO05D009794 6.6e-51 203.8 104 100.0
ATMG00270 Arabidopsis thaliana HOM05D003517 ORTHO05D009794 4.6e-36 154.5 84 95.2
BNapus_Darmor_BZH_scaffold_234p00290 Brassica napus HOM05D003517 ORTHO05D009794 4.6e-36 154.5 84 95.2
BolSC28t60338H Brassica oleracea HOM05D003517 ORTHO05D009794 4.6e-36 154.5 84 95.2
BolSC28t60397H Brassica oleracea HOM05D003517 ORTHO05D009794 4.6e-36 154.5 84 95.2
BraSC77t46643Z Brassica rapa HOM05D003517 ORTHO05D009794 4.6e-36 154.5 84 95.2
CARHR282730 Cardamine hirsuta HOM05D003517 ORTHO05D009794 4.6e-36 154.5 84 95.2
RcHm_v2.0_MTg0498991 Rosa chinensis HOM05D003517 ORTHO05D009794 1.0e-35 153.3 84 94.0
CANSAT16G0040 Cannabis sativa HOM05D003517 ORTHO05D009794 2.3e-35 152.1 84 94.0
Lalb_Chr00c21g0406031 Lupinus albus HOM05D003517 ORTHO05D009794 1.9e-34 149.1 84 91.7
Lalb_Chr00c39g0409031 Lupinus albus HOM05D003517 ORTHO05D009794 1.9e-34 149.1 84 91.7
Lalb_Chr00c39g0409211 Lupinus albus HOM05D003517 ORTHO05D009794 1.9e-34 149.1 84 91.7
Lalb_Chr00c51g0413121 Lupinus albus HOM05D003517 ORTHO05D009794 1.9e-34 149.1 84 91.7
Aqoxy38s018 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 2.5e-34 148.7 84 91.7
Lj2P1233T102 Lonicera japonica HOM05D003517 ORTHO05D009794 9.6e-34 146.7 84 91.7
Lj2P1236T75 Lonicera japonica HOM05D003517 ORTHO05D009794 9.6e-34 146.7 84 91.7
DCAR_032460 Daucus carota HOM05D003517 ORTHO05D009794 1.6e-33 146.0 82 92.7
Lj5g0026865 Lotus japonicus HOM05D003517 ORTHO05D009794 1.6e-33 146.0 82 91.5
LjContig00439g0001390 Lotus japonicus HOM05D003517 ORTHO05D009794 1.6e-33 146.0 82 91.5
LjContig00446g0016600 Lotus japonicus HOM05D003517 ORTHO05D009794 1.6e-33 146.0 82 91.5
Sed0011263 Sechium edule HOM05D003517 ORTHO05D009794 8.1e-33 143.7 80 92.5
Sed0015872 Sechium edule HOM05D003517 ORTHO05D009794 8.1e-33 143.7 80 92.5
Nn003s41395 Nelumbo nucifera HOM05D003517 ORTHO05D009794 2.4e-32 142.1 81 91.4
Nn1g09965 Nelumbo nucifera HOM05D003517 ORTHO05D009794 2.4e-32 142.1 81 91.4
Nn1g10124 Nelumbo nucifera HOM05D003517 ORTHO05D009794 2.4e-32 142.1 81 91.4
SabraMtG0003300 Salix brachista HOM05D003517 ORTHO05D009794 4.0e-32 141.4 79 91.1
Peaxi162Scf00456g00029 Petunia axillaris HOM05D003517 ORTHO05D009794 6.9e-32 140.6 81 90.1
Solyc00g021630.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 6.9e-32 140.6 81 90.1
SHI35306 Sapria himalayana HOM05D003517 ORTHO05D009794 1.5e-31 139.4 84 86.9
SHI49089 Sapria himalayana HOM05D003517 ORTHO05D009794 1.5e-31 139.4 84 86.9
SHI53309 Sapria himalayana HOM05D003517 ORTHO05D009794 1.5e-31 139.4 84 86.9
Sp3g25610 Schrenkiella parvula HOM05D003517 ORTHO05D009794 2.0e-31 139.0 76 94.7
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 2.6e-31 138.7 78 91.0
Glyma.08G301000 Glycine max HOM05D003517 ORTHO05D009794 1.0e-30 136.7 78 91.0
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 1.0e-30 136.7 81 87.7
Gorai.001G168000 Gossypium raimondii HOM05D003517 ORTHO05D009794 1.7e-30 136.0 83 88.0
Gohir.A03G108600 Gossypium hirsutum HOM05D003517 ORTHO05D009794 8.4e-30 133.7 83 86.7
HanXRQChr00c0234g0572741 Helianthus annuus HOM05D003517 ORTHO05D009794 8.4e-30 133.7 80 88.8
HanXRQMTg0579471 Helianthus annuus HOM05D003517 ORTHO05D009794 8.4e-30 133.7 80 88.8
CAN.G1.11 Capsicum annuum HOM05D003517 ORTHO05D009794 1.4e-29 132.9 81 85.2
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.4e-29 132.9 81 84.0
MBI05_g05356_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009794 4.2e-29 131.3 81 86.4
unitig_0.g2040 Utricularia gibba HOM05D003517 ORTHO05D009794 2.1e-28 129.0 81 85.2
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.8e-27 125.9 81 80.2
Nitab4.5_0000172g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009794 5.1e-27 124.4 81 80.2
TPR.G39738 Trifolium pratense HOM05D003517 ORTHO05D009794 8.7e-27 123.6 69 94.2
CDE02G3221 Ceratophyllum demersum HOM05D003517 ORTHO05D009794 1.9e-26 122.5 71 90.1
HanXRQChr02g0049481 Helianthus annuus HOM05D003517 ORTHO05D009794 5.7e-26 120.9 80 83.8
Gohir.A08G086024 Gossypium hirsutum HOM05D003517 ORTHO05D009794 1.6e-25 119.4 82 78.0
CSS0025973 Camellia sinensis var. sinensis HOM05D003517 ORTHO05D009794 2.6e-23 112.1 61 93.4
LjContig00315g0004708 Lotus japonicus HOM05D003517 ORTHO05D009794 1.9e-21 105.9 59 91.5
HanXRQChr01g0013411 Helianthus annuus HOM05D003517 ORTHO05D009794 1.1e-18 96.7 54 90.7
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.8e-16 89.4 62 80.6
arahy.Tifrunner.gnm1.ann1.N584HR Arachis hypogaea HOM05D003517 ORTHO05D009794 2.4e-16 89.0 59 81.4
Nitab4.5_0000172g0410 Nicotiana tabacum HOM05D003517 ORTHO05D009794 5.3e-16 87.8 62 79.0
Nitab4.5_0003945g0090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.0e-15 85.9 54 83.3
CiPaw.05G081600 Carya illinoinensis HOM05D003517 ORTHO05D009794 8.5e-14 80.5 59 78.0
Sp5g20260 Schrenkiella parvula HOM05D003517 ORTHO05D009794 3.2e-13 78.6 56 78.6
Lj2P92T86 Lonicera japonica HOM05D003517 ORTHO05D009794 1.2e-12 76.6 47 83.0
Pp3c12_12240 Physcomitrium patens HOM05D003517 ORTHO05D009794 2.2e-06 55.8 61 54.1


User provided reference genes

Program Settings