Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10029189m.g Eutrema salsugineum HOM05D003373 ORTHO05D013173 4.9e-64 248.1 167 100.0
A09p26380 Brassica napus HOM05D003373 ORTHO05D013173 2.4e-26 122.9 153 51.6
BraA09t38212Z Brassica rapa HOM05D003373 ORTHO05D013173 2.4e-26 122.9 153 51.6
BcaB01g01800 Brassica carinata HOM05D003373 ORTHO05D013173 5.3e-26 121.7 158 53.2
C09p33540 Brassica napus HOM05D003373 ORTHO05D013173 1.1e-23 114.0 167 48.5
BolC9t56189H Brassica oleracea HOM05D003373 ORTHO05D013173 1.1e-23 114.0 167 48.5
BcaC04g21286 Brassica carinata HOM05D003373 ORTHO05D013173 1.4e-23 113.6 167 48.5
C03p36240 Brassica napus HOM05D003373 ORTHO05D013173 1.4e-21 107.1 106 67.0
BolC3t15933H Brassica oleracea HOM05D003373 ORTHO05D013173 1.4e-21 107.1 106 67.0
A03p29950 Brassica napus HOM05D003373 ORTHO05D013173 3.0e-21 105.9 102 67.6
AL3G40300 Arabidopsis lyrata HOM05D003373 ORTHO05D013173 5.2e-21 105.1 157 52.2
BraA03t12184Z Brassica rapa HOM05D003373 ORTHO05D013173 1.7e-19 100.1 100 65.0
Sp1g21690 Schrenkiella parvula HOM05D003373 ORTHO05D004419 1.2e-17 94.0 89 66.3
AL1G38400 Arabidopsis lyrata HOM05D003373 ORTHO05D004419 4.5e-17 92.0 89 65.2
Thhalv10007745m.g Eutrema salsugineum HOM05D003373 ORTHO05D004419 4.5e-17 92.0 79 72.2
BraA08t34708Z Brassica rapa HOM05D003373 ORTHO05D004419 1.3e-16 90.5 79 70.9
MELO3C012054.2 Cucumis melo HOM05D003373 ORTHO05D004419 1.7e-16 90.1 78 69.2
BcaB03g11980 Brassica carinata HOM05D003373 ORTHO05D004419 2.9e-16 89.4 79 69.6
A08p27730 Brassica napus HOM05D003373 ORTHO05D004419 3.8e-16 89.0 79 69.6
AT1G27090 Arabidopsis thaliana HOM05D003373 ORTHO05D004419 5.0e-16 88.6 82 67.1
Carub.0001s2388 Capsella rubella HOM05D003373 ORTHO05D004419 5.0e-16 88.6 89 62.9
AT3G24690 Arabidopsis thaliana HOM05D003373 ORTHO05D013173 1.1e-15 87.4 69 73.9
BcaB07g32385 Brassica carinata HOM05D003373 ORTHO05D004419 1.1e-15 87.4 97 59.8
CARHR024810 Cardamine hirsuta HOM05D003373 ORTHO05D004419 1.1e-15 87.4 82 67.1
BcaC07g39253 Brassica carinata HOM05D003373 ORTHO05D004419 1.5e-15 87.0 79 70.9
COL.COLO4_36201 Corchorus olitorius HOM05D003373 ORTHO05D004419 1.5e-15 87.0 76 69.7
Duzib251G0793 Durio zibethinus HOM05D003373 ORTHO05D004419 1.5e-15 87.0 78 69.2
EL10Ac6g13134 Beta vulgaris HOM05D003373 ORTHO05D004419 2.5e-15 86.3 83 61.4
ClCG05G024690 Citrullus lanatus HOM05D003373 ORTHO05D004419 2.5e-15 86.3 78 66.7
Gohir.A05G320900 Gossypium hirsutum HOM05D003373 ORTHO05D004419 2.5e-15 86.3 78 67.9
Gohir.D05G323100 Gossypium hirsutum HOM05D003373 ORTHO05D004419 2.5e-15 86.3 78 67.9
Gorai.009G346800 Gossypium raimondii HOM05D003373 ORTHO05D004419 2.5e-15 86.3 78 67.9
Duzib248G1211 Durio zibethinus HOM05D003373 ORTHO05D004419 3.2e-15 85.9 78 66.7
Gohir.D04G137300 Gossypium hirsutum HOM05D003373 ORTHO05D004419 3.2e-15 85.9 78 66.7
Thecc.02G234000 Theobroma cacao HOM05D003373 ORTHO05D004419 3.2e-15 85.9 76 71.1
BolC8t49893H Brassica oleracea HOM05D003373 ORTHO05D004419 4.2e-15 85.5 79 69.6
CiPaw.05G141000 Carya illinoinensis HOM05D003373 ORTHO05D004419 4.2e-15 85.5 78 64.1
BcaC05g26344 Brassica carinata HOM05D003373 ORTHO05D004419 7.2e-15 84.7 79 67.1
C05p23700 Brassica napus HOM05D003373 ORTHO05D004419 7.2e-15 84.7 79 67.1
BolC5t31088H Brassica oleracea HOM05D003373 ORTHO05D004419 7.2e-15 84.7 79 67.1
Gorai.012G121700 Gossypium raimondii HOM05D003373 ORTHO05D004419 7.2e-15 84.7 78 65.4
RcHm_v2.0_Chr4g0445281 Rosa chinensis HOM05D003373 ORTHO05D004419 7.2e-15 84.7 86 60.5
A09p40480 Brassica napus HOM05D003373 ORTHO05D004419 9.4e-15 84.3 79 67.1
BraA09t39545Z Brassica rapa HOM05D003373 ORTHO05D006520 9.4e-15 84.3 79 67.1
Ciclev10031519m.g Citrus clementina HOM05D003373 ORTHO05D004419 9.4e-15 84.3 81 61.7
Actinidia31168 Actinidia chinensis HOM05D003373 ORTHO05D004419 1.2e-14 84.0 76 67.1
Duzib268G0991 Durio zibethinus HOM05D003373 ORTHO05D004419 1.2e-14 84.0 88 60.2
THA.LOC104822090 Tarenaya hassleriana HOM05D003373 ORTHO05D004419 1.2e-14 84.0 76 67.1
CsaV3_5G032210 Cucumis sativus L. HOM05D003373 ORTHO05D004419 1.6e-14 83.6 78 65.4
Gohir.A04G097600 Gossypium hirsutum HOM05D003373 ORTHO05D004419 2.1e-14 83.2 78 65.4
Lj6A795T73 Lonicera japonica HOM05D003373 ORTHO05D004419 2.1e-14 83.2 89 57.3
Aa31LG4G10950 Aethionema arabicum HOM05D003373 ORTHO05D004419 2.7e-14 82.8 76 65.8
Cpa.g.sc5.285 Carica papaya HOM05D003373 ORTHO05D004419 2.7e-14 82.8 77 64.9
Manes.05G095400 Manihot esculenta HOM05D003373 ORTHO05D004419 2.7e-14 82.8 90 57.8
Sabra10G0029900 Salix brachista HOM05D003373 ORTHO05D004419 2.7e-14 82.8 82 62.2
QL03p066330 Quercus lobata HOM05D003373 ORTHO05D004419 3.6e-14 82.4 88 60.2
Atru.chr11.1870 Acer truncatum HOM05D003373 ORTHO05D004419 4.7e-14 82.0 77 59.7
Potri.010G034900 Populus trichocarpa HOM05D003373 ORTHO05D004419 4.7e-14 82.0 82 62.2
Lj3A1043T79 Lonicera japonica HOM05D003373 ORTHO05D004419 6.1e-14 81.6 87 58.6
Cfa009067 Carpinus fangiana HOM05D003373 ORTHO05D004419 8.0e-14 81.3 76 63.2
Lj2g0024788 Lotus japonicus HOM05D003373 ORTHO05D004419 8.0e-14 81.3 85 62.4
Haze_12097 Corylus avellana HOM05D003373 ORTHO05D004419 1.0e-13 80.9 76 61.8
Psat2g126240 Pisum sativum HOM05D003373 ORTHO05D004419 1.0e-13 80.9 80 63.8
TWI18G0023 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 1.0e-13 80.9 89 56.2
Zm00001eb053410 Zea mays HOM05D003373 ORTHO05D004419 1.0e-13 80.9 72 62.5
CDE08G0466 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 1.4e-13 80.5 82 59.8
PGR102G0330 Punica granatum HOM05D003373 ORTHO05D004419 1.4e-13 80.5 77 61.0
Hund25279 Selenicereus undatus HOM05D003373 ORTHO05D004419 1.4e-13 80.5 94 55.3
Zm00001eb217180 Zea mays HOM05D003373 ORTHO05D004419 1.4e-13 80.5 72 62.5
CDE09G0772 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 1.8e-13 80.1 84 58.3
TAR622G0593 Trochodendron aralioides HOM05D003373 ORTHO05D004419 1.8e-13 80.1 77 62.3
CANSAT35G1086 Cannabis sativa HOM05D003373 ORTHO05D004419 2.3e-13 79.7 90 55.6
Hma1.2p1_1045F.1_g251400 Hydrangea macrophylla HOM05D003373 ORTHO05D004419 2.3e-13 79.7 79 58.2
Sc11g0001580 Simmondsia chinensis HOM05D003373 ORTHO05D004419 2.3e-13 79.7 73 65.8
TWI36G0800 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 2.3e-13 79.7 73 63.0
Nn3g17111 Nelumbo nucifera HOM05D003373 ORTHO05D004419 3.0e-13 79.3 77 61.0
Potri.008G194200 Populus trichocarpa HOM05D003373 ORTHO05D004419 3.0e-13 79.3 82 62.2
Sabra08G0147700 Salix brachista HOM05D003373 ORTHO05D004419 3.0e-13 79.3 77 63.6
MD13G1080700 Malus domestica HOM05D003373 ORTHO05D004419 4.0e-13 79.0 77 63.6
Manes.01G192000 Manihot esculenta HOM05D003373 ORTHO05D004419 4.0e-13 79.0 87 56.3
Sed0023513 Sechium edule HOM05D003373 ORTHO05D004419 4.0e-13 79.0 76 63.2
Actinidia04028 Actinidia chinensis HOM05D003373 ORTHO05D004419 5.2e-13 78.6 96 55.2
Ah.02g131980 Amaranthus hybridus HOM05D003373 ORTHO05D004419 5.2e-13 78.6 73 63.0
DCAR_007126 Daucus carota HOM05D003373 ORTHO05D004419 5.2e-13 78.6 80 61.2
MBI01_g01238_MAGBIO Magnolia biondii HOM05D003373 ORTHO05D004419 5.2e-13 78.6 82 59.8
vmacro16318 Vaccinium macrocarpon HOM05D003373 ORTHO05D004419 5.2e-13 78.6 73 65.8
Cc11_g13620 Coffea canephora HOM05D003373 ORTHO05D004419 6.7e-13 78.2 87 58.6
Haze_17060 Corylus avellana HOM05D003373 ORTHO05D004419 6.7e-13 78.2 76 60.5
Dinv24947 Davidia involucrata HOM05D003373 ORTHO05D004419 6.7e-13 78.2 76 59.2
Nn4g23016 Nelumbo nucifera HOM05D003373 ORTHO05D004419 6.7e-13 78.2 76 61.8
arahy.Tifrunner.gnm1.ann1.NIK4ZB Arachis hypogaea HOM05D003373 ORTHO05D004419 8.8e-13 77.8 73 63.0
AUR62026278 Chenopodium quinoa HOM05D003373 ORTHO05D004419 8.8e-13 77.8 80 57.5
AUR62026466 Chenopodium quinoa HOM05D003373 ORTHO05D004419 8.8e-13 77.8 95 53.7
CSS0018229 Camellia sinensis var. sinensis HOM05D003373 ORTHO05D004419 1.2e-12 77.4 77 61.0
Eucgr.B02587 Eucalyptus grandis HOM05D003373 ORTHO05D004419 1.2e-12 77.4 77 61.0
Nitab4.5_0000710g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 1.2e-12 77.4 91 56.0
SGA_v2.0_scaffold63G21675 Striga asiatica HOM05D003373 ORTHO05D004419 1.2e-12 77.4 99 57.6
HPP92_019601 Vanilla planifolia HOM05D003373 ORTHO05D004419 1.2e-12 77.4 72 63.9
HPP92_019651 Vanilla planifolia HOM05D003373 ORTHO05D004419 1.2e-12 77.4 72 63.9
arahy.Tifrunner.gnm1.ann1.YF4WKN Arachis hypogaea HOM05D003373 ORTHO05D004419 1.5e-12 77.0 73 63.0
Medtr5g037960 Medicago truncatula HOM05D003373 ORTHO05D004419 1.5e-12 77.0 85 57.6
MSTRG.2363 Avicennia marina HOM05D003373 ORTHO05D004419 2.0e-12 76.6 83 61.4
Glyma.01G041300 Glycine max HOM05D003373 ORTHO05D004419 2.0e-12 76.6 79 59.5
Solyc05g006900.2 Solanum lycopersicum HOM05D003373 ORTHO05D004419 2.0e-12 76.6 79 60.8
Sopen05g002860 Solanum pennellii HOM05D003373 ORTHO05D004419 2.0e-12 76.6 79 60.8
TPR.G31079 Trifolium pratense HOM05D003373 ORTHO05D004419 2.0e-12 76.6 80 61.2
TAR374G1081 Trochodendron aralioides HOM05D003373 ORTHO05D004419 2.0e-12 76.6 76 60.5
PSO017G0861 Papaver somniferum HOM05D003373 ORTHO05D004419 2.6e-12 76.3 70 65.7
PSO478G2017 Papaver somniferum HOM05D003373 ORTHO05D004419 2.6e-12 76.3 70 65.7
MD16G1080200 Malus domestica HOM05D003373 ORTHO05D004419 3.3e-12 75.9 77 63.6
Migut.L01354 Erythranthe guttata HOM05D003373 ORTHO05D004419 4.4e-12 75.5 95 57.9
FvH4_4g35680 Fragaria vesca HOM05D003373 ORTHO05D004419 4.4e-12 75.5 76 60.5
FAN22G0404 Fragaria x ananassa HOM05D003373 ORTHO05D004419 4.4e-12 75.5 76 60.5
PSO591G0008 Papaver somniferum HOM05D003373 ORTHO05D004419 4.4e-12 75.5 73 64.4
FAN07G0752 Fragaria x ananassa HOM05D003373 ORTHO05D004419 5.7e-12 75.1 76 60.5
Nitab4.5_0002382g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 5.7e-12 75.1 89 56.2
PGSC0003DMG400007711 Solanum tuberosum HOM05D003373 ORTHO05D004419 5.7e-12 75.1 90 55.6
Aqoxy3G03242 Aquilegia oxysepala HOM05D003373 ORTHO05D004419 7.5e-12 74.7 84 56.0
FAN17G1936 Fragaria x ananassa HOM05D003373 ORTHO05D004419 7.5e-12 74.7 76 60.5
Lalb_Chr04g0256431 Lupinus albus HOM05D003373 ORTHO05D004419 7.5e-12 74.7 73 63.0
Nitab4.5_0003297g0010 Nicotiana tabacum HOM05D003373 ORTHO05D004419 7.5e-12 74.7 91 56.0
PGR119G0099 Punica granatum HOM05D003373 ORTHO05D004419 7.5e-12 74.7 77 61.0
TAR629G0400 Trochodendron aralioides HOM05D003373 ORTHO05D004419 7.5e-12 74.7 86 55.8
MSTRG.13397 Avicennia marina HOM05D003373 ORTHO05D004419 9.7e-12 74.3 95 55.8
Lalb_Chr10g0097901 Lupinus albus HOM05D003373 ORTHO05D004419 9.7e-12 74.3 73 63.0
PSO832G2541 Papaver somniferum HOM05D003373 ORTHO05D004419 9.7e-12 74.3 73 63.0
Ca_04701_v3 Cicer arietinum L. HOM05D003373 ORTHO05D004419 1.3e-11 73.9 80 61.2
Dinv34191 Davidia involucrata HOM05D003373 ORTHO05D004419 1.3e-11 73.9 87 55.2
Migut.E00120 Erythranthe guttata HOM05D003373 ORTHO05D004419 1.3e-11 73.9 90 56.7
FAN12G3521 Fragaria x ananassa HOM05D003373 ORTHO05D004419 1.3e-11 73.9 76 59.2
Glyma.02G022800 Glycine max HOM05D003373 ORTHO05D004419 1.3e-11 73.9 94 50.0
Lsat_1_v5_gn_8_163340 Lactuca sativa HOM05D003373 ORTHO05D004419 1.3e-11 73.9 80 57.5
Lsat_1_v5_gn_4_9400 Lactuca sativa HOM05D003373 ORTHO05D004419 1.7e-11 73.6 75 60.0
Os03g0688200 Oryza sativa ssp. japonica HOM05D003373 ORTHO05D004419 2.2e-11 73.2 71 57.7
Peaxi162Scf00209g00714 Petunia axillaris HOM05D003373 ORTHO05D004419 2.2e-11 73.2 85 49.4
PGSC0003DMG400017635 Solanum tuberosum HOM05D003373 ORTHO05D004419 2.2e-11 73.2 79 58.2
ATR0665G354 Amborella trichopoda HOM05D003373 ORTHO05D004419 2.8e-11 72.8 72 62.5
Nitab4.5_0008971g0050 Nicotiana tabacum HOM05D003373 ORTHO05D004419 2.8e-11 72.8 89 55.1
Oeu043029.1 Olea europaea HOM05D003373 ORTHO05D004419 2.8e-11 72.8 56 73.2
Rhsim12G0129000 Rhododendron simsii HOM05D003373 ORTHO05D004419 2.8e-11 72.8 73 57.5
unitig_52.g17172 Utricularia gibba HOM05D003373 ORTHO05D004419 2.8e-11 72.8 88 55.7
VMungo1215G0200 Vigna mungo HOM05D003373 ORTHO05D004419 2.8e-11 72.8 71 60.6
Solyc01g010440.4 Solanum lycopersicum HOM05D003373 ORTHO05D004419 3.7e-11 72.4 84 57.1
Sopen01g006060 Solanum pennellii HOM05D003373 ORTHO05D004419 3.7e-11 72.4 90 54.4
SGA_v2.0_scaffold87G26974 Striga asiatica HOM05D003373 ORTHO05D004419 4.8e-11 72.0 83 57.8
Lsat_1_v5_gn_8_36201 Lactuca sativa HOM05D003373 ORTHO05D004419 6.3e-11 71.6 79 58.2
Oeu057174.1 Olea europaea HOM05D003373 ORTHO05D004419 1.4e-10 70.5 91 53.8
SalBow3G2377 Salvia bowleyana HOM05D003373 ORTHO05D004419 1.4e-10 70.5 59 69.5
DCAR_031055 Daucus carota HOM05D003373 ORTHO05D004419 1.8e-10 70.1 91 53.8
HanXRQChr17g0570411 Helianthus annuus HOM05D003373 ORTHO05D004419 4.1e-10 68.9 75 56.0
SGA_v2.0_scaffold467G52045 Striga asiatica HOM05D003373 ORTHO05D004419 4.1e-10 68.9 90 51.1
Phvul.002G067800 Phaseolus vulgaris HOM05D003373 ORTHO05D004419 5.3e-10 68.6 92 50.0
Lalb_Chr17g0340241 Lupinus albus HOM05D003373 ORTHO05D004419 9.1e-10 67.8 73 56.2
Mapoly0083s0034 Marchantia polymorpha HOM05D003373 ORTHO05D004419 9.1e-10 67.8 95 47.4
SalBow2G1107 Salvia bowleyana HOM05D003373 ORTHO05D004419 9.1e-10 67.8 77 55.8
VMungo0540G1512 Vigna mungo HOM05D003373 ORTHO05D013173 1.2e-09 67.4 71 57.7
unitig_62.g23682 Utricularia gibba HOM05D003373 ORTHO05D004419 2.0e-09 66.6 84 56.0
SEGI_31454 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 2.7e-09 66.2 71 56.3
CBR_g4061 Chara braunii HOM05D003373 ORTHO05D004419 1.0e-08 64.3 101 41.6
HanXRQChr03g0092821 Helianthus annuus HOM05D003373 ORTHO05D004419 1.0e-08 64.3 73 53.4
PGSC0003DMG400010979 Solanum tuberosum HOM05D003373 ORTHO05D013173 1.0e-08 64.3 73 57.5
SEGI_00885 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 1.3e-08 63.9 91 46.2
SGA_v2.0_scaffold166G38286 Striga asiatica HOM05D003373 ORTHO05D004419 1.7e-08 63.5 88 53.4
Pp3c25_8180 Physcomitrium patens HOM05D003373 ORTHO05D004419 2.9e-08 62.8 72 51.4
Pp3c25_8182 Physcomitrium patens HOM05D003373 ORTHO05D004419 2.9e-08 62.8 72 51.4
VMungo0464G1165 Vigna mungo HOM05D003373 ORTHO05D004419 2.9e-08 62.8 71 54.9
GSVIVG01020088001 Vitis vinifera HOM05D003373 ORTHO05D004419 3.8e-08 62.4 47 68.1
Pp3c16_590 Physcomitrium patens HOM05D003373 ORTHO05D004419 6.5e-08 61.6 92 46.7
CiPaw.06G080000 Carya illinoinensis HOM05D003373 ORTHO05D004419 1.1e-07 60.8 58 58.6
SMO012G0008 Selaginella moellendorffii HOM05D003373 ORTHO05D004419 1.5e-07 60.5 90 42.2
SMO141G0251 Selaginella moellendorffii HOM05D003373 ORTHO05D004419 1.5e-07 60.5 90 42.2
AagrBONN_evm.TU.Sc2ySwM_228.3903 Anthoceros agrestis HOM05D003373 ORTHO05D004419 4.2e-07 58.9 72 48.6
ECA234G3640 Erigeron canadensis HOM05D003373 ORTHO05D004419 3.6e-06 55.8 83 47.0


User provided reference genes

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