Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10029186m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 3.1e-162 575.1 294 100.0
Sp6g00430 Schrenkiella parvula HOM05D001925 ORTHO05D004257 2.9e-128 462.2 299 80.9
Aa31LG5G590 Aethionema arabicum HOM05D001925 ORTHO05D004257 1.1e-119 433.7 298 76.2
CARHR248450 Cardamine hirsuta HOM05D001925 ORTHO05D004257 4.3e-103 378.6 296 72.3
AL6G53090 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 8.0e-102 374.4 299 69.6
Carub.0006s3688 Capsella rubella HOM05D001925 ORTHO05D004257 1.9e-95 353.2 300 66.3
THA.LOC104825845 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 4.3e-95 352.1 299 63.5
AT4G00355 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 4.4e-92 342.0 298 66.8
THA.LOC104817027 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.7e-80 303.5 260 60.8
BcaB01g02169 Brassica carinata HOM05D001925 ORTHO05D004257 1.5e-79 300.4 305 61.0
BcaC01g06884 Brassica carinata HOM05D001925 ORTHO05D004257 2.7e-73 279.6 305 59.0
C03p39260 Brassica napus HOM05D001925 ORTHO05D004257 1.1e-71 274.2 307 58.3
BolC3t16197H Brassica oleracea HOM05D001925 ORTHO05D004257 9.6e-71 271.2 304 58.6
Cpa.g.sc11.19 Carica papaya HOM05D001925 ORTHO05D004257 8.9e-69 264.6 297 50.5
Thecc.01G357700 Theobroma cacao HOM05D001925 ORTHO05D004257 5.8e-68 261.9 307 49.5
A03p32220 Brassica napus HOM05D001925 ORTHO05D004257 1.9e-66 256.9 309 56.3
BraA03t12392Z Brassica rapa HOM05D001925 ORTHO05D004257 1.9e-66 256.9 309 56.3
Duzib133G0433 Durio zibethinus HOM05D001925 ORTHO05D004257 2.4e-66 256.5 315 48.9
Sabra14G0062300 Salix brachista HOM05D001925 ORTHO05D004257 9.3e-66 254.6 306 50.3
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 1.3e-64 250.8 316 49.4
TWI23G0808 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 1.7e-64 250.4 317 46.4
RcHm_v2.0_Chr1g0355951 Rosa chinensis HOM05D001925 ORTHO05D004257 3.0e-64 249.6 317 47.0
Duzib138G1880 Durio zibethinus HOM05D001925 ORTHO05D004257 6.6e-64 248.4 315 47.0
Atru.chr5.510 Acer truncatum HOM05D001925 ORTHO05D004257 8.7e-64 248.1 321 45.8
Dinv32493 Davidia involucrata HOM05D001925 ORTHO05D004257 8.7e-64 248.1 320 46.9
Prupe.2G172100 Prunus persica HOM05D001925 ORTHO05D004257 1.1e-63 247.7 319 47.3
vmacro20933 Vaccinium macrocarpon HOM05D001925 ORTHO05D004257 1.5e-63 247.3 309 46.6
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 2.5e-63 246.5 310 47.7
Manes.05G033200 Manihot esculenta HOM05D001925 ORTHO05D004257 2.5e-63 246.5 310 48.1
CiPaw.01G062900 Carya illinoinensis HOM05D001925 ORTHO05D004257 1.3e-62 244.2 300 49.3
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.1e-62 243.4 318 46.2
Gohir.A11G089800 Gossypium hirsutum HOM05D001925 ORTHO05D004257 2.1e-62 243.4 306 47.1
Gorai.007G100500 Gossypium raimondii HOM05D001925 ORTHO05D004257 2.1e-62 243.4 306 47.7
Ciclev10021244m.g Citrus clementina HOM05D001925 ORTHO05D004257 4.8e-62 242.3 325 47.7
FAN10G1179 Fragaria x ananassa HOM05D001925 ORTHO05D004257 4.8e-62 242.3 317 46.1
Potri.014G086000 Populus trichocarpa HOM05D001925 ORTHO05D004257 6.2e-62 241.9 319 47.3
FvH4_7g14520 Fragaria vesca HOM05D001925 ORTHO05D004257 1.4e-61 240.7 324 45.7
FAN10G2559 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.4e-61 240.7 317 45.7
CANSAT21G1319 Cannabis sativa HOM05D001925 ORTHO05D004257 2.4e-61 240.0 320 46.2
FAN06G4809 Fragaria x ananassa HOM05D001925 ORTHO05D004257 3.1e-61 239.6 324 45.4
FAN06G3089 Fragaria x ananassa HOM05D001925 ORTHO05D004257 9.0e-61 238.0 324 45.4
Manes.01G255700 Manihot esculenta HOM05D001925 ORTHO05D004257 1.2e-60 237.7 299 48.2
Actinidia02837 Actinidia chinensis HOM05D001925 ORTHO05D004257 2.0e-60 236.9 321 45.8
Gohir.D11G094100 Gossypium hirsutum HOM05D001925 ORTHO05D004257 3.4e-60 236.1 306 47.1
Lj1g0025308 Lotus japonicus HOM05D001925 ORTHO05D004257 9.9e-60 234.6 323 46.4
CSS0032978 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D004257 1.3e-59 234.2 318 44.3
FAN03G0610 Fragaria x ananassa HOM05D001925 ORTHO05D004257 2.9e-59 233.0 317 45.1
Ca_07929_v3 Cicer arietinum L. HOM05D001925 ORTHO05D004257 1.1e-58 231.1 306 45.1
QL04p053608 Quercus lobata HOM05D001925 ORTHO05D004257 1.1e-58 231.1 284 48.9
Potri.002G160700 Populus trichocarpa HOM05D001925 ORTHO05D004257 1.4e-58 230.7 315 45.7
VMungo1383G2450 Vigna mungo HOM05D001925 ORTHO05D004257 2.4e-58 229.9 321 43.3
Phvul.008G061700 Phaseolus vulgaris HOM05D001925 ORTHO05D004257 3.2e-58 229.6 325 44.9
Glyma.09G258600 Glycine max HOM05D001925 ORTHO05D004257 4.2e-58 229.2 325 44.6
Nn6g33385 Nelumbo nucifera HOM05D001925 ORTHO05D004257 1.2e-57 227.6 320 44.4
PGR031G2850 Punica granatum HOM05D001925 ORTHO05D004257 2.1e-57 226.9 308 45.5
Sabra02G0127500 Salix brachista HOM05D001925 ORTHO05D004257 3.5e-57 226.1 315 44.8
GSVIVG01026948001 Vitis vinifera HOM05D001925 ORTHO05D004257 4.6e-57 225.7 294 48.3
Glyma.18G234100 Glycine max HOM05D001925 ORTHO05D004257 7.9e-57 224.9 325 44.3
Hma1.2p1_0780F.1_g216780 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 1.0e-56 224.6 336 42.3
TPR.G37799 Trifolium pratense HOM05D001925 ORTHO05D004257 1.0e-56 224.6 311 43.1
TAR629G3070 Trochodendron aralioides HOM05D001925 ORTHO05D004257 1.0e-56 224.6 320 43.4
Nn1g01562 Nelumbo nucifera HOM05D001925 ORTHO05D004257 3.0e-56 223.0 322 41.9
Lj9A584T67 Lonicera japonica HOM05D001925 ORTHO05D004257 5.1e-56 222.2 299 47.5
Medtr7g077860 Medicago truncatula HOM05D001925 ORTHO05D004257 5.1e-56 222.2 313 43.8
TAR375G1105 Trochodendron aralioides HOM05D001925 ORTHO05D004257 5.1e-56 222.2 317 43.2
arahy.Tifrunner.gnm1.ann1.E5DFEG Arachis hypogaea HOM05D001925 ORTHO05D004257 1.5e-55 220.7 321 44.5
CiPaw.02G032000 Carya illinoinensis HOM05D001925 ORTHO05D004257 4.3e-55 219.2 287 47.7
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 5.6e-55 218.8 288 48.6
MBI18_g02843_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 7.4e-55 218.4 327 41.3
arahy.Tifrunner.gnm1.ann1.IGP217 Arachis hypogaea HOM05D001925 ORTHO05D004257 1.3e-54 217.6 321 44.2
Eucgr.D02304 Eucalyptus grandis HOM05D001925 ORTHO05D004257 1.3e-54 217.6 312 43.6
PGSC0003DMG400000175 Solanum tuberosum HOM05D001925 ORTHO05D004257 1.3e-54 217.6 318 42.8
Peaxi162Scf00020g00730 Petunia axillaris HOM05D001925 ORTHO05D004257 1.4e-53 214.2 312 43.3
THA.LOC104817300 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 2.4e-53 213.4 285 44.2
Sopen01g038550 Solanum pennellii HOM05D001925 ORTHO05D004257 2.0e-52 210.3 294 42.9
Cc02_g38170 Coffea canephora HOM05D001925 ORTHO05D004257 2.6e-52 209.9 324 42.3
TWI59G0730 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 5.8e-52 208.8 289 44.6
Sed0006621 Sechium edule HOM05D001925 ORTHO05D004257 7.6e-52 208.4 308 42.5
Hma1.2p1_0780F.1_g216750 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 1.3e-51 207.6 339 40.1
Migut.M00740 Erythranthe guttata HOM05D001925 ORTHO05D004257 2.2e-51 206.8 311 42.1
CAN.G78.91 Capsicum annuum HOM05D001925 ORTHO05D004257 8.4e-51 204.9 313 43.1
ClCG05G001470 Citrullus lanatus HOM05D001925 ORTHO05D004257 8.4e-51 204.9 305 43.0
TAR374G1741 Trochodendron aralioides HOM05D001925 ORTHO05D004257 1.4e-50 204.1 328 39.9
Oeu031215.1 Olea europaea HOM05D001925 ORTHO05D004257 3.2e-50 203.0 313 42.2
THA.LOC104802035 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 4.2e-50 202.6 289 42.2
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 9.3e-50 201.4 305 43.6
Lalb_Chr23g0275821 Lupinus albus HOM05D001925 ORTHO05D004257 1.2e-49 201.1 320 40.6
MD01G1065100 Malus domestica HOM05D001925 ORTHO05D004257 1.2e-49 201.1 329 39.8
Actinidia10041 Actinidia chinensis HOM05D001925 ORTHO05D004257 2.1e-49 200.3 291 44.7
AL4G45210 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 3.5e-49 199.5 296 43.6
Nitab4.5_0008206g0010 Nicotiana tabacum HOM05D001925 ORTHO05D004257 3.5e-49 199.5 318 40.9
SalBow8G4919 Salvia bowleyana HOM05D001925 ORTHO05D004257 3.5e-49 199.5 317 40.7
MELO3C006104.2 Cucumis melo HOM05D001925 ORTHO05D004257 4.6e-49 199.1 303 42.9
Nitab4.5_0000386g0060 Nicotiana tabacum HOM05D001925 ORTHO05D004257 7.9e-49 198.4 309 42.4
Nitab4.5_0000583g0190 Nicotiana tabacum HOM05D001925 ORTHO05D004257 7.9e-49 198.4 299 43.1
Rhsim07G0013800 Rhododendron simsii HOM05D001925 ORTHO05D004257 7.9e-49 198.4 298 43.0
Nitab4.5_0006018g0030 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.0e-48 198.0 300 43.3
MSTRG.14225 Avicennia marina HOM05D001925 ORTHO05D004257 3.9e-48 196.1 309 39.5
AT2G45980 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 5.1e-48 195.7 285 44.2
Sed0020685 Sechium edule HOM05D001925 ORTHO05D004257 5.1e-48 195.7 300 43.0
Carub.0004s2868 Capsella rubella HOM05D001925 ORTHO05D004257 1.1e-47 194.5 290 43.1
PSO782G1204 Papaver somniferum HOM05D001925 ORTHO05D004257 1.1e-47 194.5 310 39.0
MD07G1135300 Malus domestica HOM05D001925 ORTHO05D004257 1.9e-47 193.7 295 40.3
Ah.05g180510 Amaranthus hybridus HOM05D001925 ORTHO05D004257 5.6e-47 192.2 325 37.8
Thhalv10001583m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 1.3e-46 191.0 293 40.3
PSO478G2649 Papaver somniferum HOM05D001925 ORTHO05D004257 1.6e-46 190.7 309 39.2
PGR042G2528 Punica granatum HOM05D001925 ORTHO05D004257 1.2e-44 184.5 317 40.4
Sp4g28050 Schrenkiella parvula HOM05D001925 ORTHO05D004257 1.5e-44 184.1 293 41.3
Psat3g108000 Pisum sativum HOM05D001925 ORTHO05D004257 2.6e-44 183.3 278 42.8
Rhsim01G0159000 Rhododendron simsii HOM05D001925 ORTHO05D004257 3.4e-44 183.0 269 45.4
Sc26g0000880 Simmondsia chinensis HOM05D001925 ORTHO05D004257 3.4e-44 183.0 289 39.8
Peaxi162Scf00008g02423 Petunia axillaris HOM05D001925 ORTHO05D004257 7.6e-44 181.8 319 39.8
PSO017G3573 Papaver somniferum HOM05D001925 ORTHO05D004257 1.0e-43 181.4 313 38.0
AUR62022581 Chenopodium quinoa HOM05D001925 ORTHO05D004257 1.3e-43 181.0 275 40.0
CARHR141250 Cardamine hirsuta HOM05D001925 ORTHO05D004257 2.9e-43 179.9 295 40.3
Aqoxy7G00278 Aquilegia oxysepala HOM05D001925 ORTHO05D004257 4.9e-43 179.1 307 38.8
TAR636G0324 Trochodendron aralioides HOM05D001925 ORTHO05D004257 1.1e-42 177.9 280 42.1
Aa31LG1G27390 Aethionema arabicum HOM05D001925 ORTHO05D004257 1.9e-42 177.2 286 40.6
Eucgr.E00120 Eucalyptus grandis HOM05D001925 ORTHO05D004257 3.2e-42 176.4 288 41.7
Sopen10g006250 Solanum pennellii HOM05D001925 ORTHO05D004257 7.1e-42 175.3 310 38.7
PSO063G1799 Papaver somniferum HOM05D001925 ORTHO05D004257 1.2e-41 174.5 314 36.3
Solyc10g012420.3 Solanum lycopersicum HOM05D001925 ORTHO05D004257 6.0e-41 172.2 310 38.1
Oeu005388.3 Olea europaea HOM05D001925 ORTHO05D004257 2.3e-40 170.2 304 40.5
BraA05t19560Z Brassica rapa HOM05D001925 ORTHO05D004257 5.1e-40 169.1 294 37.8
A05p05970 Brassica napus HOM05D001925 ORTHO05D004257 6.7e-40 168.7 294 37.8
Sc23g0002810 Simmondsia chinensis HOM05D001925 ORTHO05D004257 8.7e-40 168.3 262 43.1
ATR0680G064 Amborella trichopoda HOM05D001925 ORTHO05D004257 1.9e-39 167.2 311 40.2
C04p06900 Brassica napus HOM05D001925 ORTHO05D004257 5.7e-39 165.6 293 38.2
BolC4t22311H Brassica oleracea HOM05D001925 ORTHO05D004257 5.7e-39 165.6 293 38.2
unitig_749.g13536 Utricularia gibba HOM05D001925 ORTHO05D004257 1.3e-38 164.5 300 38.3
CAN.G116.9 Capsicum annuum HOM05D001925 ORTHO05D004257 1.6e-38 164.1 314 37.9
DCAR_007445 Daucus carota HOM05D001925 ORTHO05D004257 2.8e-38 163.3 283 39.6
PGSC0003DMG400006504 Solanum tuberosum HOM05D001925 ORTHO05D004257 3.7e-38 162.9 271 41.3
arahy.Tifrunner.gnm1.ann1.2X3TQS Arachis hypogaea HOM05D001925 ORTHO05D004257 4.8e-38 162.5 324 38.0
Hund27265 Selenicereus undatus HOM05D001925 ORTHO05D004257 8.2e-38 161.8 266 36.8
ECA236G3632 Erigeron canadensis HOM05D001925 ORTHO05D004257 2.4e-37 160.2 298 39.3
Oeu061351.3 Olea europaea HOM05D001925 ORTHO05D004257 2.4e-37 160.2 265 40.0
C04p71970 Brassica napus HOM05D001925 ORTHO05D004257 7.6e-36 155.2 284 37.3
EL10Ac1g00401 Beta vulgaris HOM05D001925 ORTHO05D004257 5.0e-35 152.5 253 36.8
HanXRQChr13g0426611 Helianthus annuus HOM05D001925 ORTHO05D004257 5.0e-35 152.5 258 38.0
A04p34180 Brassica napus HOM05D001925 ORTHO05D004257 1.4e-34 151.0 288 37.5
BraA04t18879Z Brassica rapa HOM05D001925 ORTHO05D004257 1.4e-34 151.0 288 37.5
Medtr2g027720 Medicago truncatula HOM05D001925 ORTHO05D004257 1.9e-34 150.6 230 42.6
AUR62004372 Chenopodium quinoa HOM05D001925 ORTHO05D004257 2.5e-34 150.2 276 36.6
SalBow3G4075 Salvia bowleyana HOM05D001925 ORTHO05D004257 7.2e-34 148.7 316 34.2
DCAR_025195 Daucus carota HOM05D001925 ORTHO05D004257 3.6e-33 146.4 318 36.2
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 8.7e-32 141.7 314 36.9
SGA_v2.0_scaffold55G19707 Striga asiatica HOM05D001925 ORTHO05D004257 1.6e-30 137.5 287 35.9
Lj6A572T61 Lonicera japonica HOM05D001925 ORTHO05D004257 6.3e-30 135.6 241 37.8
Lsat_1_v5_gn_7_4301 Lactuca sativa HOM05D001925 ORTHO05D004257 1.4e-29 134.4 299 35.1
HPP92_014720 Vanilla planifolia HOM05D001925 ORTHO05D004257 2.4e-29 133.7 303 34.3
Lalb_Chr11g0072911 Lupinus albus HOM05D001925 ORTHO05D004257 1.5e-28 131.0 289 34.9
BolC4t28695H Brassica oleracea HOM05D001925 ORTHO05D004257 3.4e-28 129.8 289 34.3
HPP92_025783 Vanilla planifolia HOM05D001925 ORTHO05D004257 1.7e-27 127.5 285 32.3
CDE08G0634 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 8.5e-27 125.2 326 31.3
SGA_v2.0_scaffold4G02300 Striga asiatica HOM05D001925 ORTHO05D004257 1.0e-24 118.2 274 32.5
Migut.B01767 Erythranthe guttata HOM05D001925 ORTHO05D004257 3.9e-24 116.3 315 30.2
MBI17_g35262_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 6.7e-24 115.5 101 56.4
Zm00001eb318800 Zea mays HOM05D001925 ORTHO05D004257 1.5e-23 114.4 261 36.8
Zm00001eb103050 Zea mays HOM05D001925 ORTHO05D004257 2.0e-23 114.0 258 37.6
MBI17_g42624_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 6.3e-22 109.0 189 38.6
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 1.1e-21 108.2 361 28.5
HanXRQChr04g0121161 Helianthus annuus HOM05D001925 ORTHO05D004257 4.1e-21 106.3 236 33.9
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 9.1e-21 105.1 189 38.6
Os04g0165300 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 1.7e-19 100.9 271 30.3
unitig_8.g3798 Utricularia gibba HOM05D001925 ORTHO05D004257 1.1e-18 98.2 303 29.4
Zm00001eb305930 Zea mays HOM05D001925 ORTHO05D004257 1.1e-18 98.2 289 26.6
CDE05G2831 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 9.4e-18 95.1 269 31.2
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 3.0e-16 90.1 90 52.2
Zm00001eb087910 Zea mays HOM05D001925 ORTHO05D004257 3.3e-15 86.7 228 26.8
Zm00001eb191080 Zea mays HOM05D001925 ORTHO05D004257 3.3e-15 86.7 282 29.8
Zm00001eb415260 Zea mays HOM05D001925 ORTHO05D004257 1.1e-13 81.6 228 25.9
Os02g0821900 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 7.7e-12 75.5 291 25.4
SGA_v2.0_scaffold95G28831 Striga asiatica HOM05D001925 ORTHO05D004257 7.7e-12 75.5 243 31.3
C04p06870 Brassica napus HOM05D001925 ORTHO05D004257 6.5e-11 72.4 68 47.1
BolC4t22309H Brassica oleracea HOM05D001925 ORTHO05D004257 6.5e-11 72.4 68 47.1
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 8.5e-11 72.0 77 45.5
A05p05940 Brassica napus HOM05D001925 ORTHO05D004257 1.1e-10 71.6 63 49.2
BraA05t19557Z Brassica rapa HOM05D001925 ORTHO05D004257 1.1e-10 71.6 63 49.2
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 1.1e-10 71.6 77 45.5
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 7.2e-10 68.9 93 41.9
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 8.0e-09 65.5 80 41.2
Os07g0418200 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 2.3e-08 63.9 111 30.6
Lj6C572T1 Lonicera japonica HOM05D001925 ORTHO05D004257 2.2e-06 57.4 46 71.7


User provided reference genes

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