Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 1.4e-57 226.1 119 100.0
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 2.6e-51 205.3 122 91.8
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 7.6e-51 203.8 121 90.9
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 2.2e-50 202.2 119 89.1
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 2.9e-50 201.8 122 89.3
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 8.4e-50 200.3 118 88.1
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 8.4e-50 200.3 118 88.1
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 1.4e-49 199.5 118 87.3
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 1.4e-49 199.5 118 87.3
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 1.7e-47 192.6 116 89.7
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 9.6e-46 186.8 117 85.5
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 6.2e-45 184.1 118 84.7
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 6.2e-45 184.1 118 84.7
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 1.8e-44 182.6 117 82.9
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 1.8e-44 182.6 117 82.9
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 1.8e-44 182.6 117 82.9
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 1.7e-42 176.0 127 79.5
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 1.0e-23 113.6 121 58.7
Carub.0007s1945 Capsella rubella HOM05D009543 ORTHO05D004666 1.3e-23 113.2 122 56.6
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 3.0e-23 112.1 123 55.3
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 3.9e-23 111.7 115 55.7
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 4.3e-22 108.2 123 53.7
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 4.3e-22 108.2 123 53.7
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 4.3e-22 108.2 123 53.7
BcaB01g01833 Brassica carinata HOM05D009543 ORTHO05D004666 1.4e-20 103.2 121 55.4
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 1.8e-20 102.8 116 55.2
Thhalv10026583m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 3.1e-20 102.1 124 52.4
Sp7g20070 Schrenkiella parvula HOM05D009543 ORTHO05D004666 6.9e-20 100.9 113 53.1
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 1.2e-19 100.1 121 51.2
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 1.2e-16 90.1 71 62.0
BcaB05g23718 Brassica carinata HOM05D008153 ORTHO05D004666 1.3e-13 80.1 47 85.1
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 1.2e-11 73.6 112 39.3
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 1.5e-11 73.2 114 37.7
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.5e-11 73.2 113 38.9
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 2.0e-11 72.8 115 38.3
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 2.6e-11 72.4 104 42.3
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 4.5e-11 71.6 118 41.5
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 7.7e-11 70.9 120 37.5
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 2.9e-10 68.9 75 46.7
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 3.8e-10 68.6 78 47.4
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 5.0e-10 68.2 124 38.7
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 1.4e-09 66.6 111 36.0
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 1.4e-09 66.6 112 37.5
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 2.5e-09 65.9 103 42.7
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 3.2e-09 65.5 123 35.0
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 3.2e-09 65.5 110 40.0
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 4.2e-09 65.1 77 49.4
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 5.5e-09 64.7 108 38.9
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 7.2e-09 64.3 69 49.3
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 9.4e-09 63.9 97 44.3
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 9.4e-09 63.9 121 33.9
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 9.4e-09 63.9 69 50.7
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 9.4e-09 63.9 115 37.4
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 9.4e-09 63.9 119 38.7
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 1.2e-08 63.5 123 36.6
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.2e-08 63.5 75 44.0
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.2e-08 63.5 108 38.0
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.2e-08 63.5 75 44.0
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.6e-08 63.2 106 38.7
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 2.1e-08 62.8 81 40.7
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 2.7e-08 62.4 118 34.7
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.7e-08 62.4 97 39.2
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 3.6e-08 62.0 114 35.1
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.6e-08 62.0 69 49.3
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 3.6e-08 62.0 77 44.2
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 4.7e-08 61.6 75 44.0
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 6.1e-08 61.2 78 43.6
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 6.1e-08 61.2 119 36.1
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 6.1e-08 61.2 113 33.6
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 6.1e-08 61.2 70 45.7
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 7.9e-08 60.8 78 43.6
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 7.9e-08 60.8 69 49.3
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 7.9e-08 60.8 77 46.8
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 7.9e-08 60.8 78 43.6
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.0e-07 60.5 75 42.7
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.0e-07 60.5 108 37.0
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 1.4e-07 60.1 111 36.0
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 1.4e-07 60.1 78 42.3
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 1.4e-07 60.1 99 33.3
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 1.4e-07 60.1 123 34.1
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 1.4e-07 60.1 123 34.1
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 1.8e-07 59.7 115 36.5
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 1.8e-07 59.7 115 36.5
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 1.8e-07 59.7 75 42.7
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 1.8e-07 59.7 69 43.5
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 1.8e-07 59.7 69 43.5
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.8e-07 59.7 77 45.5
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.8e-07 59.7 77 45.5
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 3.0e-07 58.9 76 39.5
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 3.0e-07 58.9 122 34.4
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 3.0e-07 58.9 105 38.1
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 3.9e-07 58.5 78 46.2
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 5.1e-07 58.2 115 36.5
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 5.1e-07 58.2 122 35.2
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 6.7e-07 57.8 96 42.7
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 8.8e-07 57.4 119 33.6
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 8.8e-07 57.4 124 34.7
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 8.8e-07 57.4 80 41.2
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 8.8e-07 57.4 119 36.1
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 1.5e-06 56.6 68 39.7
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 1.5e-06 56.6 115 36.5
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 2.0e-06 56.2 115 35.7
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 2.0e-06 56.2 122 35.2
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 2.0e-06 56.2 66 47.0
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 2.0e-06 56.2 66 47.0
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 2.0e-06 56.2 67 43.3
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 2.0e-06 56.2 115 31.3
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 2.0e-06 56.2 73 41.1
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 2.0e-06 56.2 77 41.6
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 2.6e-06 55.8 116 37.1
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 3.3e-06 55.5 78 39.7
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 3.3e-06 55.5 78 39.7
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 3.3e-06 55.5 101 37.6
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 4.4e-06 55.1 123 30.9
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 4.4e-06 55.1 66 45.5
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 4.4e-06 55.1 114 33.3
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 4.4e-06 55.1 67 43.3
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 5.7e-06 54.7 77 46.8
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 5.7e-06 54.7 80 40.0
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 5.7e-06 54.7 80 38.8
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 7.4e-06 54.3 112 33.9
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 7.4e-06 54.3 77 40.3
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 7.4e-06 54.3 119 34.5
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 7.4e-06 54.3 77 46.8
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 9.7e-06 53.9 113 35.4
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 9.7e-06 53.9 113 35.4
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 9.7e-06 53.9 113 35.4
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 9.7e-06 53.9 69 40.6


User provided reference genes

Program Settings