Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 1.6e-174 615.9 296 100.0
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 9.1e-154 547.0 378 75.1
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 9.1e-154 547.0 378 75.1
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 3.5e-153 545.0 377 75.1
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 2.3e-149 532.3 378 74.1
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 3.3e-148 528.5 378 73.3
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 7.5e-148 527.3 378 73.3
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.7e-139 498.4 349 75.1
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.7e-139 498.4 349 75.1
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 1.2e-137 493.4 374 71.1
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 7.7e-137 490.7 371 71.7
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 7.7e-137 490.7 371 71.7
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 8.5e-136 487.3 374 69.5
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.5e-135 486.5 380 68.9
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 2.5e-135 485.7 375 69.6
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 2.5e-135 485.7 375 69.6
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 5.5e-135 484.6 374 70.1
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 9.4e-135 483.8 375 70.1
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.6e-134 483.0 373 70.2
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.6e-134 483.0 373 70.2
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 4.7e-134 481.5 371 70.1
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 8.0e-134 480.7 371 70.1
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.0e-133 480.3 375 68.8
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.0e-133 480.3 375 68.8
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 1.4e-133 479.9 376 69.9
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 1.4e-133 479.9 375 69.6
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 2.2e-131 472.6 372 69.4
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 7.0e-130 467.6 369 68.0
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 2.9e-128 462.2 374 68.7
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 6.1e-126 454.5 324 75.0
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 1.8e-125 453.0 372 66.9
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 1.8e-125 453.0 372 66.9
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 1.8e-125 453.0 372 66.9
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 1.8e-125 453.0 372 66.9
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.2e-123 446.0 351 68.7
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 1.1e-122 443.7 372 66.1
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 7.8e-121 437.6 373 66.2
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 7.8e-121 437.6 373 66.2
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 7.8e-121 437.6 373 66.2
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 7.8e-121 437.6 373 66.2
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 7.8e-121 437.6 373 66.2
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 7.8e-121 437.6 373 66.2
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 1.0e-120 437.2 372 64.5
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.9e-120 435.3 323 71.2
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 5.6e-119 431.4 331 70.4
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 3.6e-118 428.7 373 64.3
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 7.5e-116 421.0 342 68.1
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.2e-115 419.5 340 67.1
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 4.9e-115 418.3 352 66.2
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 4.6e-113 411.8 380 62.1
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 7.6e-100 367.9 207 90.3
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 4.1e-98 362.1 196 92.9
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 6.6e-96 354.8 210 86.7
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 6.6e-96 354.8 196 91.8
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 2.6e-92 342.8 191 91.1
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 8.4e-91 337.8 315 61.0
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 1.6e-89 333.6 181 92.8
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 3.5e-89 332.4 188 90.4
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 3.5e-89 332.4 188 90.4
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 1.1e-87 327.4 210 82.9
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 4.3e-87 325.5 191 88.0
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 1.6e-86 323.6 191 87.4
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 6.2e-86 321.6 188 88.3
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 1.8e-85 320.1 191 86.9
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 7.6e-84 314.7 188 86.2
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 5.4e-82 308.5 191 85.3
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 3.5e-81 305.8 211 75.8
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 3.0e-80 302.8 211 75.4
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 5.1e-80 302.0 220 75.5
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 1.4e-77 293.9 284 59.2
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 1.0e-72 277.7 219 70.3
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 9.0e-69 264.6 202 71.8
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 2.6e-68 263.1 203 71.4
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 6.5e-67 258.5 170 81.2
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.1e-66 257.7 274 54.7
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 2.5e-66 256.5 220 68.2
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 7.9e-65 251.5 133 91.7
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 1.8e-64 250.4 136 91.9
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.3e-63 246.1 137 87.6
BolSC28t60416H Brassica oleracea HOM05D003783 ORTHO05D004568 1.0e-59 234.6 205 60.5
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 5.1e-56 222.2 175 70.3
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 3.3e-55 219.5 117 93.2
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 4.3e-55 219.2 243 56.4
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 3.8e-51 206.1 123 85.4
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 4.2e-50 202.6 122 86.1
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.7e-46 190.7 120 82.5
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 6.3e-46 188.7 119 80.7
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 9.1e-45 184.9 125 77.6
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 4.5e-44 182.6 115 80.9
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 5.9e-44 182.2 115 83.5
BolSC28t60383H Brassica oleracea HOM05D003783 ORTHO05D004568 1.7e-43 180.6 86 96.5
BraSC224t45815Z Brassica rapa HOM05D003783 ORTHO05D004568 1.7e-43 180.6 86 96.5
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 7.9e-41 171.8 105 84.8
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 6.7e-40 168.7 89 92.1
BolC1t03458H Brassica oleracea HOM05D003783 ORTHO05D004568 4.4e-39 166.0 83 92.8
Nitab4.5_0000172g1380 Nicotiana tabacum HOM05D003783 ORTHO05D004568 9.1e-37 158.3 118 72.0
HanXRQChr11g0334171 Helianthus annuus HOM05D003783 ORTHO05D004568 5.9e-36 155.6 96 79.2
HanXRQChr17g0544021 Helianthus annuus HOM05D003783 ORTHO05D004568 5.9e-36 155.6 96 79.2
CAN.G1439.7 Capsicum annuum HOM05D003783 ORTHO05D004568 3.8e-35 152.9 86 81.4
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 1.1e-34 151.4 75 97.3
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 2.1e-33 147.1 89 86.5
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 2.1e-33 147.1 89 86.5
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 2.7e-33 146.7 81 88.9
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.4e-31 139.4 91 81.3
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 1.7e-30 137.5 89 79.8
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 1.1e-29 134.8 105 71.4
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 1.4e-29 134.4 79 84.8
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 4.1e-29 132.9 65 96.9
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 1.2e-28 131.3 81 85.2
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 5.0e-27 125.9 80 82.5
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 2.1e-25 120.6 75 85.3
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 2.1e-25 120.6 80 78.8
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.6e-25 119.8 69 84.1
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 4.7e-25 119.4 98 65.3
Lalb_Chr22g0357831 Lupinus albus HOM05D003783 ORTHO05D004568 2.8e-22 110.2 71 73.2
CAN.G124.8 Capsicum annuum HOM05D003783 ORTHO05D004568 8.3e-22 108.6 90 66.7
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 1.3e-19 101.3 76 73.7
SHI26670 Sapria himalayana HOM05D003783 ORTHO05D004568 5.0e-19 99.4 60 75.0
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 6.5e-19 99.0 68 73.5
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 8.6e-19 98.6 119 51.3
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 8.6e-19 98.6 51 92.2
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 4.7e-17 92.8 62 79.0
Solyc02g050290.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.0e-16 89.7 63 74.6
BcaC01g03561 Brassica carinata HOM05D025145 ORTHO05D016019 1.5e-15 87.8 42 95.2
Nitab4.5_0005837g0060 Nicotiana tabacum HOM05D000102 ORTHO05D000138 2.0e-15 87.4 48 85.4
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.6e-15 87.0 157 42.7
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 9.8e-15 85.1 49 87.8
C05p22550 Brassica napus HOM05D003783 ORTHO05D004568 9.2e-13 78.6 60 68.3
SHI26671 Sapria himalayana HOM05D003783 ORTHO05D004568 1.2e-12 78.2 67 61.2
ATR1173G002 Amborella trichopoda HOM05D003783 ORTHO05D004568 7.8e-12 75.5 51 74.5
SHI28703 Sapria himalayana HOM05D003783 ORTHO05D004568 1.7e-11 74.3 63 61.9
BolC5t30954H Brassica oleracea HOM05D003783 ORTHO05D004568 6.6e-11 72.4 60 65.0
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 2.5e-10 70.5 48 75.0
Lsat_1_v5_gn_4_3660 Lactuca sativa HOM05D003783 ORTHO05D001069 3.3e-10 70.1 62 64.5
SEGI_06792 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 3.3e-10 70.1 54 70.4
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 4.3e-10 69.7 47 74.5
Solyc10g048130.3 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.3e-10 69.7 92 50.0
Actinidia31963 Actinidia chinensis HOM05D000944 ORTHO05D003581 1.4e-08 64.7 53 62.3
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 1.2e-07 61.6 48 66.7
Peaxi162Scf00122g00087 Petunia axillaris HOM05D000216 ORTHO05D000634 2.0e-07 60.8 28 96.4
Solyc12g035910.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.9e-06 57.0 35 77.1


User provided reference genes

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