Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 2.1e-219 765.8 428 100.0
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 2.5e-143 513.1 423 74.0
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 2.1e-126 456.8 430 67.4
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 1.8e-125 453.8 426 68.1
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 2.2e-120 436.8 439 64.0
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 2.4e-114 416.8 426 62.7
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 5.3e-114 415.6 435 63.2
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 4.5e-113 412.5 426 63.8
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 1.0e-112 411.4 419 62.8
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 1.3e-107 394.4 441 59.2
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 9.1e-106 388.3 412 60.0
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 9.1e-106 388.3 430 59.3
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 1.3e-96 357.8 437 55.1
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 2.9e-96 356.7 414 56.3
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 3.8e-96 356.3 437 54.9
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 1.2e-92 344.7 432 52.1
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 2.2e-91 340.5 436 52.8
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 1.8e-90 337.4 435 54.9
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 1.6e-89 334.3 485 49.3
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 7.8e-89 332.0 431 50.6
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 3.3e-87 326.6 437 49.7
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 2.1e-86 323.9 442 50.0
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 2.8e-86 323.6 416 52.2
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 4.0e-85 319.7 437 49.0
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 6.8e-85 318.9 463 46.9
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 1.5e-84 317.8 436 49.3
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 2.0e-84 317.4 423 54.8
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 4.4e-84 316.2 436 48.6
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 1.3e-83 314.7 441 47.2
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 3.7e-83 313.2 427 50.6
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 8.3e-83 312.0 443 48.5
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 1.4e-82 311.2 432 47.2
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 1.4e-82 311.2 452 47.6
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 1.2e-81 308.1 439 49.2
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.2e-81 308.1 451 45.9
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 2.0e-81 307.4 435 53.1
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 3.5e-81 306.6 449 45.4
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 3.5e-81 306.6 470 47.4
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 1.0e-80 305.1 449 48.3
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 1.7e-80 304.3 439 47.6
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 2.3e-80 303.9 416 50.7
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 5.0e-80 302.8 423 50.1
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 6.6e-80 302.4 423 51.1
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 1.5e-79 301.2 435 49.9
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 1.5e-79 301.2 438 49.1
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.9e-79 300.8 438 46.3
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 1.9e-79 300.8 442 47.5
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 4.3e-79 299.7 443 49.9
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 5.6e-79 299.3 436 47.2
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 7.3e-79 298.9 438 46.1
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 3.6e-78 296.6 434 49.1
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 3.6e-78 296.6 421 48.2
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 3.6e-78 296.6 432 47.2
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 6.2e-78 295.8 423 50.6
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 6.2e-78 295.8 452 45.6
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 8.1e-78 295.4 436 47.0
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 5.2e-77 292.7 433 48.5
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 1.2e-76 291.6 455 45.5
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 1.5e-76 291.2 427 48.5
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.0e-76 290.8 428 46.7
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 3.4e-76 290.0 416 47.6
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 5.8e-76 289.3 449 44.1
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 7.5e-76 288.9 430 47.4
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.7e-75 287.7 425 47.3
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 3.7e-75 286.6 432 44.7
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 1.6e-73 281.2 430 44.4
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 2.1e-73 280.8 427 45.2
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 7.8e-73 278.9 417 47.2
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 1.0e-72 278.5 426 45.1
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 1.5e-71 274.6 421 47.3
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 1.9e-71 274.2 512 42.0
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 1.9e-71 274.2 420 46.9
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 5.6e-71 272.7 508 41.1
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 1.6e-70 271.2 434 45.4
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 2.8e-70 270.4 425 46.6
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 6.2e-70 269.2 420 46.0
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 5.8e-68 262.7 425 43.3
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 5.8e-68 262.7 415 44.1
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 7.6e-68 262.3 424 44.1
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.3e-67 261.5 430 46.5
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 1.7e-67 261.2 388 46.6
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 2.4e-66 257.3 392 44.6
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 7.1e-66 255.8 460 41.5
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 1.2e-65 255.0 384 49.0
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 1.6e-65 254.6 434 41.9
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 2.7e-65 253.8 426 44.1
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 1.7e-64 251.1 413 44.1
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 9.6e-63 245.4 382 46.1
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 2.8e-62 243.8 412 42.7
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 4.7e-62 243.0 403 42.7
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 4.7e-62 243.0 424 41.3
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 1.4e-61 241.5 436 41.3
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 4.0e-61 240.0 412 46.1
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 7.6e-60 235.7 387 45.0
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 4.2e-58 229.9 348 48.0
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 4.6e-57 226.5 311 48.9
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 1.3e-56 224.9 437 40.5
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 3.0e-56 223.8 401 42.1
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 3.0e-56 223.8 570 34.0
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 7.3e-55 219.2 435 40.0
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 9.6e-55 218.8 409 40.1
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 2.1e-54 217.6 388 44.8
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 3.6e-54 216.9 260 54.6
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 4.8e-54 216.5 389 42.7
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 2.4e-53 214.2 359 45.7
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 8.4e-51 205.7 417 40.5
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 1.4e-50 204.9 450 34.9
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.0e-48 198.7 421 39.0
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 3.1e-45 187.2 313 44.7
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 2.9e-43 180.6 392 40.1
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 2.2e-35 154.5 361 38.8
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 2.3e-32 144.4 305 37.7
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 3.0e-32 144.1 473 29.8
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 2.8e-30 137.5 274 40.9
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 8.2e-30 136.0 269 39.4
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 6.9e-29 132.9 417 31.7
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 1.2e-28 132.1 135 57.8
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 1.0e-27 129.0 156 53.8
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 1.0e-27 129.0 428 31.3
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 1.3e-27 128.6 177 48.6
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 3.2e-26 124.0 98 70.4
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 1.6e-25 121.7 438 30.6
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 5.7e-23 113.2 397 28.7
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 2.0e-20 104.8 203 41.4
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 9.4e-18 95.9 250 34.4
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 3.6e-17 94.0 275 34.2
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 3.0e-16 90.9 95 50.5
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 7.4e-15 86.3 313 28.8
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 1.3e-14 85.5 109 47.7
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 6.5e-11 73.2 63 57.1
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 1.1e-10 72.4 75 54.7
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 3.2e-10 70.9 132 40.9
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 5.5e-10 70.1 72 54.2
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 2.1e-09 68.2 61 54.1
Cre12.g539750 Chlamydomonas reinhardtii HOM05D005355 ORTHO05D006591 3.7e-06 57.4 93 37.6


User provided reference genes

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