Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10029138m.g Eutrema salsugineum HOM05D007924 ORTHO05D010328 7.9e-88 327.0 159 100.0
AT2G07707 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 3.3e-86 321.6 159 98.1
ATMG00480 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 3.3e-86 321.6 159 98.1
CARHR282860 Cardamine hirsuta HOM05D007924 ORTHO05D010328 3.3e-86 321.6 159 98.1
BraSC48t46292Z Brassica rapa HOM05D007924 ORTHO05D010328 9.7e-86 320.1 159 97.5
BraSC48t46309Z Brassica rapa HOM05D007924 ORTHO05D010328 9.7e-86 320.1 159 97.5
BolC1t03437H Brassica oleracea HOM05D007924 ORTHO05D010328 8.5e-82 307.0 159 94.3
CANSAT16G0013 Cannabis sativa HOM05D007924 ORTHO05D010328 1.2e-67 260.0 160 82.5
HanXRQMTg0579161 Helianthus annuus HOM05D007924 ORTHO05D010328 1.6e-67 259.6 160 83.1
Sed0020154 Sechium edule HOM05D007924 ORTHO05D010328 7.7e-67 257.3 160 81.9
Lj2P1227T93 Lonicera japonica HOM05D007924 ORTHO05D010328 1.7e-66 256.1 160 82.5
Nn1g10039 Nelumbo nucifera HOM05D007924 ORTHO05D010328 2.2e-66 255.8 160 82.5
PGSC0003DMG400011350 Solanum tuberosum HOM05D007924 ORTHO05D010328 2.9e-66 255.4 157 82.2
GSVIVG01000955001 Vitis vinifera HOM05D007924 ORTHO05D010328 2.9e-66 255.4 160 81.9
CAN.G1180.17 Capsicum annuum HOM05D007924 ORTHO05D010328 6.5e-66 254.2 157 82.2
LjContig00315g0007302 Lotus japonicus HOM05D007924 ORTHO05D010328 6.5e-66 254.2 162 80.9
PGR028G0018 Punica granatum HOM05D007924 ORTHO05D010328 1.1e-65 253.4 160 81.9
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 2.5e-65 252.3 158 79.7
TPR.G7050 Trifolium pratense HOM05D007924 ORTHO05D010328 2.5e-65 252.3 162 80.2
Lalb_Chr00c24g0406701 Lupinus albus HOM05D007924 ORTHO05D010328 7.2e-65 250.8 162 80.2
Duzib116G0340 Durio zibethinus HOM05D007924 ORTHO05D010328 2.7e-64 248.8 157 81.5
SGA_v2.0_scaffold575G53004 Striga asiatica HOM05D007924 ORTHO05D010328 6.1e-64 247.7 160 77.5
DCAR_032428 Daucus carota HOM05D007924 ORTHO05D010328 1.0e-63 246.9 159 79.9
CSS0018158 Camellia sinensis var. sinensis HOM05D007924 ORTHO05D010328 2.3e-63 245.7 157 79.0
SHI38116 Sapria himalayana HOM05D007924 ORTHO05D010328 2.6e-62 242.3 158 77.8
Nn1g10153 Nelumbo nucifera HOM05D007924 ORTHO05D010328 5.7e-62 241.1 152 82.2
RcHm_v2.0_Chr6g0257961 Rosa chinensis HOM05D007924 ORTHO05D010328 1.7e-61 239.6 159 76.1
RcHm_v2.0_MTg0498901 Rosa chinensis HOM05D007924 ORTHO05D010328 1.7e-61 239.6 159 76.1
Lj3g0001131 Lotus japonicus HOM05D007924 ORTHO05D010328 2.0e-59 232.6 162 75.3
Nitab4.5_0003945g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 2.3e-58 229.2 140 81.4
CAN.G1001.34 Capsicum annuum HOM05D007924 ORTHO05D010328 6.8e-55 217.6 157 73.2
Lalb_Chr14g0363841 Lupinus albus HOM05D007924 ORTHO05D010328 6.3e-53 211.1 162 71.0
Gorai.001G164500 Gossypium raimondii HOM05D007924 ORTHO05D010328 8.3e-53 210.7 124 82.3
HanXRQMTg0579521 Helianthus annuus HOM05D007924 ORTHO05D010328 2.4e-52 209.1 115 87.8
Nitab4.5_0000172g0710 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.2e-51 206.8 157 69.4
Ca_03774_v3 Cicer arietinum L. HOM05D007924 ORTHO05D010328 1.0e-47 193.7 130 78.5
Nitab4.5_0028251g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 3.4e-46 188.7 141 73.8
CsaV3_5G016970 Cucumis sativus L. HOM05D007924 ORTHO05D010328 4.1e-44 181.8 114 81.6
Oeu018666.1 Olea europaea HOM05D007924 ORTHO05D010328 9.2e-44 180.6 102 84.3
Nitab4.5_0000844g0160 Nicotiana tabacum HOM05D007924 ORTHO05D010328 2.3e-42 176.0 125 72.8
RcHm_v2.0_MTg0499211 Rosa chinensis HOM05D007924 ORTHO05D010328 1.1e-39 167.2 101 78.2
SabraMtG0001000 Salix brachista HOM05D007924 ORTHO05D010328 4.0e-39 165.2 119 73.1
HanXRQChr00c0055g0571411 Helianthus annuus HOM05D007924 ORTHO05D010328 9.8e-38 160.6 88 86.4
CsaV3_5G015830 Cucumis sativus L. HOM05D007924 ORTHO05D010328 1.3e-37 160.2 97 82.5
BolSC28t60326H Brassica oleracea HOM05D007924 ORTHO05D011743 2.1e-35 152.9 83 88.0
BraSC159t45717Z Brassica rapa HOM05D007924 ORTHO05D010328 2.1e-35 152.9 83 88.0
HanXRQChr09g0250631 Helianthus annuus HOM05D007924 ORTHO05D010328 4.6e-35 151.8 88 83.0
HanXRQChr15g0468771 Helianthus annuus HOM05D007924 ORTHO05D010328 3.6e-32 142.1 80 83.8
C01p34680 Brassica napus HOM05D007924 ORTHO05D010328 4.7e-32 141.7 83 83.1
CsaV3_UNG210380 Cucumis sativus L. HOM05D007924 ORTHO05D010328 2.3e-31 139.4 84 82.1
Nitab4.5_0003222g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 2.2e-29 132.9 111 64.0
Nitab4.5_0004553g0090 Nicotiana tabacum HOM05D007924 ORTHO05D010328 8.1e-24 114.4 80 75.0
BraSC48t46342Z Brassica rapa HOM05D007924 ORTHO05D010328 3.1e-23 112.5 71 77.5
BolSC28t60430H Brassica oleracea HOM05D007924 ORTHO05D010328 1.2e-22 110.5 61 88.5
Phvul.011G125800 Phaseolus vulgaris HOM05D007924 ORTHO05D010328 9.9e-22 107.5 62 83.9
Cfa023001 Carpinus fangiana HOM05D007924 ORTHO05D010328 1.7e-21 106.7 105 61.9
arahy.Tifrunner.gnm1.ann1.I8TN6N Arachis hypogaea HOM05D007924 ORTHO05D010328 4.9e-21 105.1 83 71.1
Nitab4.5_0000172g1200 Nicotiana tabacum HOM05D007924 ORTHO05D007069 4.2e-20 102.1 72 70.8
CsaV3_3G039780 Cucumis sativus L. HOM05D000558 ORTHO05D006060 3.0e-18 95.9 64 71.9
Nitab4.5_0002418g0260 Nicotiana tabacum HOM05D007924 ORTHO05D010328 2.0e-14 83.2 57 71.9
PGSC0003DMG400013141 Solanum tuberosum HOM05D007924 ORTHO05D010328 4.4e-14 82.0 57 77.2
SHI38118 Sapria himalayana HOM05D007924 ORTHO05D010328 3.8e-13 79.0 49 75.5
Nitab4.5_0002734g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 4.9e-13 78.6 57 73.7
MD02G1208400 Malus domestica HOM05D007924 ORTHO05D010328 6.4e-13 78.2 44 81.8
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 7.1e-12 74.7 45 80.0
SHI34938 Sapria himalayana HOM05D007924 ORTHO05D010328 6.0e-11 71.6 74 55.4
Potri.011G045912 Populus trichocarpa HOM05D007924 ORTHO05D010328 4.8e-08 62.0 43 72.1
A06p10930 Brassica napus HOM05D007924 ORTHO05D010328 1.2e-06 57.4 40 65.0


User provided reference genes

Program Settings