Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10029101m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 7.8e-31 136.7 82 100.0
BcaB05g23876 Brassica carinata HOM05D003086 ORTHO05D003347 1.9e-29 132.1 82 95.1
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 3.3e-29 131.3 82 87.8
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 9.6e-29 129.8 82 86.6
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 2.8e-28 128.3 82 86.6
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 1.1e-27 126.3 82 85.4
BcaB05g23875 Brassica carinata HOM05D003086 ORTHO05D003347 2.4e-27 125.2 83 92.8
Aa31LG9G11270 Aethionema arabicum HOM05D003086 ORTHO05D003347 7.6e-26 120.2 82 86.6
A02p26470 Brassica napus HOM05D003086 ORTHO05D003347 3.2e-24 114.8 83 88.0
BraA02t07650Z Brassica rapa HOM05D003086 ORTHO05D003347 3.2e-24 114.8 83 88.0
BcaB01g02737 Brassica carinata HOM05D003086 ORTHO05D003347 4.6e-23 110.9 85 83.5
BcaC01g04661 Brassica carinata HOM05D003086 ORTHO05D003347 4.6e-23 110.9 85 83.5
C03p35200 Brassica napus HOM05D003086 ORTHO05D003347 4.6e-23 110.9 85 83.5
BolC3t15831H Brassica oleracea HOM05D003086 ORTHO05D003347 4.6e-23 110.9 85 83.5
A03p29280 Brassica napus HOM05D003086 ORTHO05D003347 6.0e-23 110.5 86 82.6
BraA03t12124Z Brassica rapa HOM05D003086 ORTHO05D003347 6.0e-23 110.5 86 82.6
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 3.0e-22 108.2 83 77.1
Sp6g06680 Schrenkiella parvula HOM05D003086 ORTHO05D003347 4.3e-21 104.4 85 80.0
BcaC05g27913 Brassica carinata HOM05D003086 ORTHO05D003347 7.4e-21 103.6 83 83.1
C05p39210 Brassica napus HOM05D003086 ORTHO05D003347 7.4e-21 103.6 83 83.1
BolC5t32654H Brassica oleracea HOM05D003086 ORTHO05D003347 7.4e-21 103.6 83 83.1
C09p35950 Brassica napus HOM05D003086 ORTHO05D003347 4.0e-19 97.8 83 81.9
BolC9t56428H Brassica oleracea HOM05D003086 ORTHO05D003347 4.0e-19 97.8 83 81.9
BraA09t38405Z Brassica rapa HOM05D003086 ORTHO05D003347 1.5e-18 95.9 82 78.0
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 3.4e-18 94.7 75 70.7
BcaNung01108 Brassica carinata HOM05D003086 ORTHO05D003347 2.5e-16 88.6 84 63.1
A09p28400 Brassica napus HOM05D003086 ORTHO05D003347 2.5e-16 88.6 83 75.9
BcaC09g50920 Brassica carinata HOM05D003086 ORTHO05D003347 1.6e-15 85.9 84 61.9
C01p19250 Brassica napus HOM05D003086 ORTHO05D003347 1.6e-15 85.9 84 61.9
BolC1t01850H Brassica oleracea HOM05D003086 ORTHO05D003347 1.6e-15 85.9 84 61.9
BraA01t01474Z Brassica rapa HOM05D003086 ORTHO05D003347 1.6e-15 85.9 84 61.9
BraA08t32861Z Brassica rapa HOM05D003086 ORTHO05D003347 1.6e-15 85.9 84 61.9
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 2.1e-15 85.5 69 60.9
AT4G24026 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 6.0e-15 84.0 84 69.0
AL7G29250 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 7.9e-15 83.6 85 68.2
Carub.0007s1706 Capsella rubella HOM05D003086 ORTHO05D003347 1.8e-14 82.4 85 68.2
BcaNung06471 Brassica carinata HOM05D003086 ORTHO05D003347 6.7e-14 80.5 85 61.2
C07p53320 Brassica napus HOM05D003086 ORTHO05D003347 6.7e-14 80.5 85 61.2
BolC7t45826H Brassica oleracea HOM05D003086 ORTHO05D003347 6.7e-14 80.5 85 61.2
BcaNung05697 Brassica carinata HOM05D003086 ORTHO05D003347 1.1e-13 79.7 85 60.0
A03p54930 Brassica napus HOM05D003086 ORTHO05D003347 1.3e-12 76.3 86 65.1
BraA03t14558Z Brassica rapa HOM05D003086 ORTHO05D003347 1.3e-12 76.3 86 65.1
Thhalv10015091m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 3.7e-12 74.7 62 66.1
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 1.5e-10 69.3 70 58.6
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 4.5e-10 67.8 73 53.4
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 2.9e-09 65.1 49 63.3
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 2.9e-09 65.1 49 63.3
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 2.9e-09 65.1 49 63.3
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 3.8e-09 64.7 57 56.1
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 5.0e-09 64.3 57 59.6
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 6.5e-09 63.9 58 58.6
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 1.1e-08 63.2 65 52.3
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 1.1e-08 63.2 60 60.0
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 1.4e-08 62.8 61 59.0
Sabra01G0063400 Salix brachista HOM05D003086 ORTHO05D003347 1.9e-08 62.4 73 50.7
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.9e-08 62.4 57 57.9
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 2.5e-08 62.0 53 56.6
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 2.5e-08 62.0 61 57.4
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 3.2e-08 61.6 62 50.0
Aa31LG2G1580 Aethionema arabicum HOM05D000001 ORTHO05D000003 4.2e-08 61.2 77 54.5
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 4.2e-08 61.2 55 58.2
Ciclev10023176m.g Citrus clementina HOM05D003086 ORTHO05D003347 4.2e-08 61.2 67 64.2
Ciclev10033638m.g Citrus clementina HOM05D003086 ORTHO05D003347 4.2e-08 61.2 67 64.2
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 4.2e-08 61.2 60 56.7
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.2e-08 61.2 57 54.4
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 4.2e-08 61.2 68 50.0
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.5e-08 60.8 58 53.4
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 5.5e-08 60.8 58 53.4
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 5.5e-08 60.8 58 56.9
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 5.5e-08 60.8 58 51.7
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 5.5e-08 60.8 61 52.5
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 1.2e-07 59.7 51 60.8
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 1.6e-07 59.3 67 49.3
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.6e-07 59.3 61 55.7
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 1.6e-07 59.3 58 53.4
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 1.6e-07 59.3 65 53.8
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 1.6e-07 59.3 65 49.2
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 1.6e-07 59.3 52 57.7
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 1.6e-07 59.3 79 46.8
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 2.1e-07 58.9 59 59.3
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 2.1e-07 58.9 52 57.7
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.1e-07 58.9 62 51.6
QL02p028382 Quercus lobata HOM05D003086 ORTHO05D003347 2.7e-07 58.5 54 57.4
SEGI_15730 Sequoiadendron giganteum HOM05D003086 ORTHO05D003347 2.7e-07 58.5 49 65.3
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 3.5e-07 58.2 63 49.2
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 4.6e-07 57.8 48 58.3
FvH4_5g11470 Fragaria vesca HOM05D003086 ORTHO05D003347 6.1e-07 57.4 67 56.7
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 6.1e-07 57.4 74 51.4
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 6.1e-07 57.4 59 50.8
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 6.1e-07 57.4 57 52.6
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 7.9e-07 57.0 56 64.3
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 7.9e-07 57.0 63 49.2
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 7.9e-07 57.0 69 46.4
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 7.9e-07 57.0 63 47.6
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 7.9e-07 57.0 67 50.7
Sopen03g022700 Solanum pennellii HOM05D003086 ORTHO05D003347 7.9e-07 57.0 56 66.1
PGSC0003DMG400018543 Solanum tuberosum HOM05D003086 ORTHO05D003347 7.9e-07 57.0 56 66.1
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 1.0e-06 56.6 56 53.6
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 1.0e-06 56.6 59 57.6
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 1.0e-06 56.6 52 53.8
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 1.0e-06 56.6 52 53.8
CANSAT21G0721 Cannabis sativa HOM05D003086 ORTHO05D003347 1.3e-06 56.2 62 53.2
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 1.3e-06 56.2 67 49.3
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 1.3e-06 56.2 67 49.3
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 1.3e-06 56.2 74 41.9
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 1.8e-06 55.8 75 42.7
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 1.8e-06 55.8 58 51.7
Manes.02G005600 Manihot esculenta HOM05D003086 ORTHO05D003347 1.8e-06 55.8 76 46.1
Migut.N01532 Erythranthe guttata HOM05D003086 ORTHO05D003347 2.3e-06 55.5 67 53.7
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 2.3e-06 55.5 61 50.8
RcHm_v2.0_Chr7g0186341 Rosa chinensis HOM05D003086 ORTHO05D003347 2.3e-06 55.5 65 58.5
FAN04G2505 Fragaria x ananassa HOM05D003086 ORTHO05D003347 3.0e-06 55.1 69 46.4
Gohir.A08G111400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 3.0e-06 55.1 74 50.0
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 3.0e-06 55.1 49 55.1
Gohir.D08G124400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 3.0e-06 55.1 74 50.0
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 3.0e-06 55.1 50 58.0
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 3.9e-06 54.7 60 50.0
Manes.01G053400 Manihot esculenta HOM05D003086 ORTHO05D003347 3.9e-06 54.7 83 43.4
TWI60G1451 Tripterygium wilfordii HOM05D003086 ORTHO05D003347 3.9e-06 54.7 77 51.9
HPP92_013003 Vanilla planifolia HOM05D003086 ORTHO05D003347 3.9e-06 54.7 60 50.0
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 5.1e-06 54.3 55 52.7
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 5.1e-06 54.3 64 46.9
COL.COLO4_16806 Corchorus olitorius HOM05D003086 ORTHO05D003347 5.1e-06 54.3 41 65.9
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 5.1e-06 54.3 56 55.4
Nitab4.5_0002780g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 5.1e-06 54.3 56 64.3
Nitab4.5_0007100g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 5.1e-06 54.3 56 64.3
Zm00001eb259280 Zea mays HOM05D003086 ORTHO05D003347 5.1e-06 54.3 52 67.3
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 6.7e-06 53.9 72 43.1
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 6.7e-06 53.9 54 51.9
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 6.7e-06 53.9 36 69.4
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 6.7e-06 53.9 60 50.0
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 6.7e-06 53.9 60 50.0
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 6.7e-06 53.9 60 50.0
AT1G64584 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 8.7e-06 53.5 77 44.2
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 8.7e-06 53.5 66 47.0


User provided reference genes

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