Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 3.8e-143 511.5 266 100.0
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 4.1e-137 491.5 266 95.1
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 5.9e-136 487.6 266 95.5
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 2.2e-135 485.7 262 95.8
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 2.5e-134 482.3 266 94.0
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 4.4e-131 471.5 270 91.9
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 6.3e-130 467.6 266 93.2
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 6.3e-130 467.6 266 93.2
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 1.8e-129 466.1 266 92.9
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 3.1e-129 465.3 266 92.1
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 4.1e-129 464.9 266 92.5
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 5.9e-128 461.1 266 91.0
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 1.1e-121 440.3 251 92.8
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 2.4e-121 439.1 251 92.4
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 3.6e-117 425.2 250 90.0
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 3.6e-117 425.2 250 90.0
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 8.0e-117 424.1 251 87.6
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 1.5e-115 419.9 271 78.6
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 7.5e-107 391.0 271 74.5
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 1.6e-104 383.3 270 73.0
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 1.0e-103 380.6 269 75.8
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 7.3e-102 374.4 270 72.2
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 1.2e-101 373.6 269 71.4
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 2.8e-101 372.5 269 70.6
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 2.3e-100 369.4 266 72.2
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 2.3e-100 369.4 269 70.6
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 5.2e-100 368.2 271 72.3
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 6.8e-100 367.9 271 71.2
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 8.9e-100 367.5 197 96.4
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 8.9e-100 367.5 197 96.4
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 2.0e-99 366.3 265 67.9
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 5.7e-99 364.8 269 71.0
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 7.5e-99 364.4 270 71.9
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 7.5e-99 364.4 270 71.9
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 9.8e-99 364.0 267 70.8
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 1.3e-98 363.6 267 72.3
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 1.7e-98 363.2 268 70.5
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 2.2e-98 362.8 269 69.9
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 2.9e-98 362.5 266 71.4
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 3.7e-98 362.1 267 71.5
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 3.7e-98 362.1 270 71.5
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 4.9e-98 361.7 267 68.9
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 1.4e-97 360.1 268 72.8
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 3.2e-97 359.0 267 71.9
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 3.2e-97 359.0 274 70.8
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 3.2e-97 359.0 269 69.1
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 4.1e-97 358.6 268 69.4
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 5.4e-97 358.2 275 67.3
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 5.4e-97 358.2 268 69.8
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 5.4e-97 358.2 263 70.0
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 9.2e-97 357.5 268 70.1
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 1.2e-96 357.1 269 68.4
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.6e-96 356.7 262 71.8
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.6e-96 356.7 262 71.8
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 2.7e-96 355.9 265 68.3
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.7e-96 355.9 262 71.4
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 3.5e-96 355.5 262 71.4
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 4.6e-96 355.1 262 71.4
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 4.6e-96 355.1 262 71.4
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 7.8e-96 354.4 262 71.0
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 1.0e-95 354.0 267 69.7
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 1.3e-95 353.6 269 68.8
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 1.7e-95 353.2 266 68.0
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 3.0e-95 352.4 271 68.6
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 6.6e-95 351.3 268 69.0
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 6.6e-95 351.3 272 68.0
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 8.6e-95 350.9 268 69.0
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 1.5e-94 350.1 266 68.8
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 4.3e-94 348.6 269 66.9
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 7.3e-94 347.8 267 68.5
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 9.5e-94 347.4 273 66.7
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 1.6e-93 346.7 268 68.3
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 2.8e-93 345.9 275 67.3
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 2.8e-93 345.9 267 67.4
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 4.7e-93 345.1 270 67.8
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 1.1e-92 344.0 275 66.2
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 1.1e-92 344.0 266 69.2
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 2.3e-92 342.8 262 67.9
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 3.1e-92 342.4 266 67.7
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 4.4e-91 338.6 268 66.4
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 5.8e-91 338.2 267 65.9
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 5.8e-91 338.2 275 65.5
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 7.5e-91 337.8 270 66.7
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 7.5e-91 337.8 270 68.1
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 9.8e-91 337.4 272 64.3
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 1.3e-90 337.0 260 66.9
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 1.7e-90 336.7 265 66.0
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 2.2e-90 336.3 267 67.4
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 4.9e-90 335.1 268 64.9
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 1.1e-89 334.0 273 66.3
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 2.7e-88 329.3 266 65.0
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 3.5e-88 328.9 272 64.3
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 3.5e-88 328.9 273 63.4
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 1.7e-87 326.6 266 64.7
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 2.5e-86 322.8 224 72.3
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 3.3e-86 322.4 234 67.9
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 2.6e-83 312.8 250 64.0
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 1.3e-82 310.5 267 61.4
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 6.4e-82 308.1 306 56.5
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 2.4e-81 306.2 191 77.0
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 2.7e-80 302.8 234 66.2
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 2.4e-76 289.7 264 59.5
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 4.0e-76 288.9 244 59.0
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 2.9e-74 282.7 222 61.3
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 1.4e-73 280.4 185 73.5
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 2.4e-73 279.6 267 58.4
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 5.1e-71 271.9 192 72.9
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 9.6e-70 267.7 247 55.1
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 3.6e-69 265.8 210 60.5
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 4.7e-69 265.4 220 56.8
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 9.9e-67 257.7 226 60.2
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 2.9e-66 256.1 180 66.1
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 6.4e-66 255.0 213 60.1
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 1.9e-65 253.4 249 56.2
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 4.0e-60 235.7 266 57.1
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 4.0e-60 235.7 266 57.1
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 1.2e-59 234.2 266 56.8
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 3.2e-57 226.1 174 70.7
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 5.3e-52 208.8 144 68.1
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 5.5e-49 198.7 129 78.3
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 2.6e-43 179.9 153 51.6
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 7.9e-40 168.3 117 73.5
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 6.7e-39 165.2 154 48.7
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 4.8e-37 159.1 157 56.1
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 1.8e-36 157.1 116 65.5
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 1.2e-27 127.9 98 69.4
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 5.9e-27 125.6 173 38.2
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 6.1e-24 115.5 68 80.9
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 5.9e-19 99.0 70 65.7
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 5.0e-18 95.9 70 64.3
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 3.0e-15 86.7 163 29.4
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 1.1e-14 84.7 66 62.1
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 2.6e-11 73.6 60 60.0
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 2.2e-10 70.5 85 50.6
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 4.2e-09 66.2 55 60.0
unitig_8.g3788 Utricularia gibba HOM05D006032 ORTHO05D007544 2.0e-06 57.4 113 33.6
FvH4_5g19211 Fragaria vesca HOM05D006032 ORTHO05D197553 7.5e-06 55.5 56 55.4


User provided reference genes

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