Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 1.4e-184 649.4 326 100.0
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 1.1e-163 580.1 326 88.7
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 1.0e-158 563.5 316 88.0
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 2.6e-154 548.9 318 86.8
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 1.3e-153 546.6 327 83.5
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 1.1e-152 543.5 319 84.3
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 7.2e-152 540.8 325 82.5
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 3.6e-151 538.5 325 81.8
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 1.8e-150 536.2 325 81.8
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 3.9e-150 535.0 325 81.5
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 3.3e-149 531.9 337 79.5
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 8.2e-148 527.3 326 80.4
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 3.4e-146 521.9 320 80.0
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 5.5e-128 461.5 321 71.7
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 2.1e-127 459.5 317 71.9
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 8.8e-126 454.1 319 70.8
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 8.8e-126 454.1 320 71.6
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 1.2e-125 453.8 320 70.0
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 9.1e-123 444.1 321 68.8
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 4.5e-122 441.8 317 68.8
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 5.9e-122 441.4 322 66.5
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 7.7e-122 441.0 325 67.1
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 7.7e-122 441.0 325 67.1
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 7.7e-122 441.0 316 69.0
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.0e-121 440.7 316 68.0
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.3e-121 440.3 316 67.7
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 1.7e-121 439.9 316 67.7
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.7e-121 439.9 316 68.0
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 1.7e-121 439.9 319 67.4
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 2.3e-121 439.5 315 69.5
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 2.3e-121 439.5 316 68.0
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 2.9e-121 439.1 318 66.7
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 3.8e-121 438.7 320 68.4
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 3.8e-121 438.7 320 68.4
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 1.9e-120 436.4 319 67.7
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.5e-120 436.0 316 67.1
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 2.5e-120 436.0 320 67.8
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 2.5e-120 436.0 315 67.6
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 3.2e-120 435.6 323 67.8
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 3.2e-120 435.6 320 69.1
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 5.5e-120 434.9 327 65.1
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 7.2e-120 434.5 327 65.1
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.2e-119 433.7 316 67.1
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 1.2e-119 433.7 315 67.6
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 2.8e-119 432.6 320 65.6
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 2.8e-119 432.6 318 69.2
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 4.7e-119 431.8 323 66.3
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 6.1e-119 431.4 318 68.6
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 1.8e-118 429.9 239 88.7
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 2.3e-118 429.5 314 67.8
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 3.0e-118 429.1 319 66.8
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 5.2e-118 428.3 320 67.5
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 5.2e-118 428.3 315 67.0
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 6.8e-118 427.9 324 65.7
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 1.5e-117 426.8 319 64.9
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 2.0e-117 426.4 329 65.3
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 4.4e-117 425.2 318 66.4
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 5.7e-117 424.9 319 66.5
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 9.8e-117 424.1 315 66.0
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 9.8e-117 424.1 318 64.8
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 9.8e-117 424.1 320 65.0
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 1.7e-116 423.3 320 64.7
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 2.2e-116 422.9 313 64.9
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 2.8e-116 422.5 323 66.3
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 4.9e-116 421.8 311 65.6
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 4.9e-116 421.8 309 67.0
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 6.3e-116 421.4 318 65.7
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 8.3e-116 421.0 350 61.7
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 1.1e-115 420.6 320 64.1
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 4.1e-115 418.7 316 65.5
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 1.6e-114 416.8 318 65.7
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 2.0e-114 416.4 315 63.8
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 4.5e-114 415.2 318 62.3
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 5.9e-114 414.8 345 60.6
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 1.3e-113 413.7 316 64.2
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 2.9e-113 412.5 318 64.2
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 3.8e-113 412.1 320 63.8
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 3.8e-113 412.1 315 64.4
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 3.8e-113 412.1 318 62.6
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.9e-112 409.8 319 65.8
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 1.9e-112 409.8 318 63.5
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 3.3e-112 409.1 317 63.4
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 4.3e-112 408.7 319 62.4
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 9.5e-112 407.5 318 63.2
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 4.7e-111 405.2 325 61.8
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 2.0e-109 399.8 313 63.6
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 3.4e-109 399.1 318 62.9
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 1.7e-108 396.7 372 55.4
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 4.6e-106 388.7 280 67.5
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 1.7e-105 386.7 286 66.8
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 3.0e-105 386.0 315 58.7
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 3.0e-105 386.0 337 59.1
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 6.6e-105 384.8 318 61.6
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 4.7e-103 378.6 260 71.2
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 1.4e-102 377.1 319 58.6
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 5.8e-101 371.7 312 59.9
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 7.0e-99 364.8 298 61.4
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 6.0e-98 361.7 276 64.5
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 7.8e-98 361.3 280 64.6
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 8.6e-97 357.8 244 72.1
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 1.2e-95 354.0 243 72.0
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 7.8e-90 334.7 231 71.9
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 4.3e-88 328.9 310 52.9
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 4.7e-87 325.5 233 67.0
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 2.2e-84 316.6 319 50.2
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 8.7e-81 304.7 240 64.6
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 5.6e-80 302.0 236 61.9
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 6.2e-79 298.5 203 71.9
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 4.2e-75 285.8 243 58.8
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 7.1e-75 285.0 243 63.4
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 1.1e-72 277.7 313 47.9
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 1.1e-70 271.2 240 59.2
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 1.2e-66 257.7 188 64.4
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 1.8e-62 243.8 304 42.1
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 2.3e-57 226.9 191 59.7
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 3.7e-55 219.5 184 60.3
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 6.9e-46 188.7 316 38.0
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 3.4e-45 186.4 133 68.4
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 3.2e-43 179.9 322 38.5
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 1.7e-39 167.5 323 36.5
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 5.9e-37 159.1 117 68.4
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 8.5e-36 155.2 129 58.1
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 1.7e-31 141.0 109 67.0
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 5.3e-30 136.0 126 54.8
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 3.4e-29 133.3 122 59.0
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 4.5e-29 132.9 113 56.6
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 4.5e-29 132.9 113 56.6
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 4.5e-29 132.9 113 56.6
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 1.8e-25 120.9 81 75.3
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 2.3e-25 120.6 90 64.4
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 3.7e-23 113.2 98 53.1
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 1.4e-22 111.3 82 70.7
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 6.3e-15 85.9 75 53.3
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 2.4e-14 84.0 54 70.4
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 9.1e-14 82.0 85 48.2
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 1.8e-09 67.8 58 53.4
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 6.8e-09 65.9 60 53.3
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 6.8e-09 65.9 60 53.3
arahy.Tifrunner.gnm1.ann1.G2MMRU Arachis hypogaea HOM05D005332 ORTHO05D006861 3.1e-06 57.0 41 73.2
arahy.Tifrunner.gnm1.ann1.SQV5XE Arachis hypogaea HOM05D005332 ORTHO05D004201 3.1e-06 57.0 57 50.9


User provided reference genes

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