Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10028765m.g Eutrema salsugineum HOM05D005739 ORTHO05D007740 1.6e-200 702.6 357 100.0
Sp6g04100 Schrenkiella parvula HOM05D005739 ORTHO05D007740 8.6e-183 643.7 357 92.4
BraA09t38171Z Brassica rapa HOM05D005739 ORTHO05D007740 3.6e-181 638.3 357 89.9
A09p26050 Brassica napus HOM05D005739 ORTHO05D007740 1.1e-180 636.7 357 89.6
BolC9t56140H Brassica oleracea HOM05D005739 ORTHO05D007740 2.6e-179 632.1 357 89.4
BcaC04g21334 Brassica carinata HOM05D005739 ORTHO05D007740 5.8e-179 630.9 357 89.1
AL6G48370 Arabidopsis lyrata HOM05D005739 ORTHO05D007740 1.7e-178 629.4 357 89.6
AT4G04880 Arabidopsis thaliana HOM05D005739 ORTHO05D007740 3.7e-178 628.2 357 89.4
Carub.0006s3279 Capsella rubella HOM05D005739 ORTHO05D007740 1.4e-177 626.3 357 87.1
CARHR252690 Cardamine hirsuta HOM05D005739 ORTHO05D007740 5.4e-177 624.4 357 88.8
BcaB01g01842 Brassica carinata HOM05D005739 ORTHO05D007740 2.8e-173 612.1 357 86.6
Aa31LG9G9620 Aethionema arabicum HOM05D005739 ORTHO05D007740 3.2e-161 572.0 368 79.3
C09p33050 Brassica napus HOM05D005739 ORTHO05D007740 3.9e-159 565.1 319 88.4
QL05p074082 Quercus lobata HOM05D005739 ORTHO05D007740 4.5e-147 525.0 359 71.3
Cfa000251 Carpinus fangiana HOM05D005739 ORTHO05D007740 5.5e-145 518.1 359 71.9
Potri.011G000100 Populus trichocarpa HOM05D005739 ORTHO05D007740 2.1e-144 516.2 359 72.7
Atru.chr10.2176 Acer truncatum HOM05D005739 ORTHO05D007740 2.7e-144 515.8 357 73.4
Actinidia11847 Actinidia chinensis HOM05D005739 ORTHO05D007740 3.9e-143 511.9 361 70.4
Sabra11G0000600 Salix brachista HOM05D005739 ORTHO05D007740 6.7e-143 511.1 359 72.7
THA.LOC104812968 Tarenaya hassleriana HOM05D005739 ORTHO05D007740 5.6e-142 508.1 337 75.4
GSVIVG01012654001 Vitis vinifera HOM05D005739 ORTHO05D007740 1.6e-141 506.5 352 71.9
COL.COLO4_31742 Corchorus olitorius HOM05D005739 ORTHO05D007740 8.1e-141 504.2 352 70.5
CsaV3_6G049150 Cucumis sativus L. HOM05D005739 ORTHO05D007740 8.1e-141 504.2 357 69.7
TWI38G1065 Tripterygium wilfordii HOM05D005739 ORTHO05D007740 8.1e-141 504.2 362 72.1
Ciclev10015698m.g Citrus clementina HOM05D005739 ORTHO05D007740 1.1e-140 503.8 358 70.1
Dinv13869 Davidia involucrata HOM05D005739 ORTHO05D007740 1.4e-140 503.4 355 72.1
Gohir.D06G153000 Gossypium hirsutum HOM05D005739 ORTHO05D007740 1.8e-140 503.1 352 71.0
MD10G1317700 Malus domestica HOM05D005739 ORTHO05D007740 1.8e-140 503.1 357 69.5
Sed0020639 Sechium edule HOM05D005739 ORTHO05D007740 1.8e-140 503.1 357 70.3
Nn1g03584 Nelumbo nucifera HOM05D005739 ORTHO05D007740 2.4e-140 502.7 356 71.1
Gorai.010G179000 Gossypium raimondii HOM05D005739 ORTHO05D007740 6.9e-140 501.1 352 70.7
MELO3C007380.2 Cucumis melo HOM05D005739 ORTHO05D007740 1.5e-139 500.0 357 68.9
Hma1.2p1_0813F.1_g222580 Hydrangea macrophylla HOM05D005739 ORTHO05D007740 3.4e-139 498.8 359 69.1
RcHm_v2.0_Chr5g0003721 Rosa chinensis HOM05D005739 ORTHO05D007740 5.8e-139 498.0 358 68.4
Thecc.06G217300 Theobroma cacao HOM05D005739 ORTHO05D007740 1.7e-138 496.5 352 69.0
HanXRQChr16g0515931 Helianthus annuus HOM05D005739 ORTHO05D007740 2.9e-138 495.7 358 68.2
Duzib235G0413 Durio zibethinus HOM05D005739 ORTHO05D007740 3.8e-138 495.4 352 69.3
PGR004G1404 Punica granatum HOM05D005739 ORTHO05D007740 9.3e-137 490.7 360 67.8
CSS0045804 Camellia sinensis var. sinensis HOM05D005739 ORTHO05D007740 2.1e-136 489.6 360 69.2
arahy.Tifrunner.gnm1.ann1.HAY2RB Arachis hypogaea HOM05D005739 ORTHO05D007740 4.6e-136 488.4 360 67.8
DCAR_008137 Daucus carota HOM05D005739 ORTHO05D007740 6.0e-136 488.0 357 67.8
VMungo1215G0361 Vigna mungo HOM05D005739 ORTHO05D007740 6.0e-136 488.0 361 67.9
Eucgr.D01304 Eucalyptus grandis HOM05D005739 ORTHO05D007740 1.0e-135 487.3 358 67.6
Cc09_g01940 Coffea canephora HOM05D005739 ORTHO05D007740 3.0e-135 485.7 353 66.9
arahy.Tifrunner.gnm1.ann1.GPHX1M Arachis hypogaea HOM05D005739 ORTHO05D007740 5.1e-135 485.0 361 66.5
VMungo0540G2038 Vigna mungo HOM05D005739 ORTHO05D007740 5.1e-135 485.0 357 67.5
Ca_21095_v3 Cicer arietinum L. HOM05D005739 ORTHO05D007740 6.7e-135 484.6 366 66.4
Ca_30203_v3 Cicer arietinum L. HOM05D005739 ORTHO05D007740 6.7e-135 484.6 366 66.4
Migut.M01296 Erythranthe guttata HOM05D005739 ORTHO05D007740 6.7e-135 484.6 360 66.7
Sed0022137 Sechium edule HOM05D005739 ORTHO05D007740 8.7e-135 484.2 355 68.2
EL10Ac8g20019 Beta vulgaris HOM05D005739 ORTHO05D007740 1.1e-134 483.8 356 66.9
Glyma.07G258900 Glycine max HOM05D005739 ORTHO05D007740 1.1e-134 483.8 361 67.0
Haze_06773 Corylus avellana HOM05D005739 ORTHO05D007740 1.5e-134 483.4 329 72.3
TAR627G1089 Trochodendron aralioides HOM05D005739 ORTHO05D007740 1.5e-134 483.4 356 68.5
Glyma.15G106200 Glycine max HOM05D005739 ORTHO05D007740 2.5e-134 482.6 358 66.5
MSTRG.15974 Avicennia marina HOM05D005739 ORTHO05D007740 3.3e-134 482.3 354 67.2
TPR.G37091 Trifolium pratense HOM05D005739 ORTHO05D007740 3.3e-134 482.3 361 65.7
FvH4_3g02490 Fragaria vesca HOM05D005739 ORTHO05D007740 1.3e-133 480.3 355 65.4
Lsat_1_v5_gn_4_60101 Lactuca sativa HOM05D005739 ORTHO05D007740 1.3e-133 480.3 336 70.2
Glyma.13G206500 Glycine max HOM05D005739 ORTHO05D007740 1.6e-133 479.9 359 65.7
Phvul.003G077000 Phaseolus vulgaris HOM05D005739 ORTHO05D007740 1.6e-133 479.9 361 65.9
ClCG01G022090 Citrullus lanatus HOM05D005739 ORTHO05D007740 2.1e-133 479.6 360 67.8
Psat4g007680 Pisum sativum HOM05D005739 ORTHO05D007740 3.7e-133 478.8 362 65.2
Peaxi162Scf00203g01110 Petunia axillaris HOM05D005739 ORTHO05D007740 4.8e-133 478.4 356 66.6
Oeu063902.1 Olea europaea HOM05D005739 ORTHO05D007740 6.3e-133 478.0 359 67.7
Rhsim02G0110500 Rhododendron simsii HOM05D005739 ORTHO05D007740 6.3e-133 478.0 375 66.1
Cpa.g.sc198.24 Carica papaya HOM05D005739 ORTHO05D007740 1.8e-132 476.5 335 73.4
PGSC0003DMG400011257 Solanum tuberosum HOM05D005739 ORTHO05D007740 1.8e-132 476.5 361 65.4
vmacro15817 Vaccinium macrocarpon HOM05D005739 ORTHO05D007740 1.8e-132 476.5 374 65.8
Solyc10g005310.3 Solanum lycopersicum HOM05D005739 ORTHO05D007740 9.0e-132 474.2 361 65.4
FAN25G0806 Fragaria x ananassa HOM05D005739 ORTHO05D007740 2.0e-131 473.0 351 65.2
PSO832G4144 Papaver somniferum HOM05D005739 ORTHO05D007740 2.0e-131 473.0 362 66.0
Lj6g0027190 Lotus japonicus HOM05D005739 ORTHO05D007740 4.5e-131 471.9 361 65.9
Phvul.006G151100 Phaseolus vulgaris HOM05D005739 ORTHO05D007740 4.5e-131 471.9 357 65.8
PSO210G3635 Papaver somniferum HOM05D005739 ORTHO05D007740 5.9e-131 471.5 364 65.7
SalBow8G1417 Salvia bowleyana HOM05D005739 ORTHO05D007740 7.6e-131 471.1 357 66.7
Nitab4.5_0007448g0040 Nicotiana tabacum HOM05D005739 ORTHO05D007740 1.0e-130 470.7 348 67.8
CDE11G0579 Ceratophyllum demersum HOM05D005739 ORTHO05D007740 5.0e-130 468.4 353 66.0
ECA234G0122 Erigeron canadensis HOM05D005739 ORTHO05D007740 1.1e-129 467.2 353 66.6
SGA_v2.0_scaffold4G01929 Striga asiatica HOM05D005739 ORTHO05D007740 5.5e-129 464.9 368 65.8
Zm00001eb110820 Zea mays HOM05D005739 ORTHO05D007740 1.0e-127 460.7 353 63.7
Gohir.A06G147200 Gossypium hirsutum HOM05D005739 ORTHO05D007740 3.0e-127 459.1 330 70.3
Lalb_Chr20g0118561 Lupinus albus HOM05D005739 ORTHO05D007740 3.0e-127 459.1 361 66.5
Ca_00625_v3 Cicer arietinum L. HOM05D005739 ORTHO05D007740 5.7e-126 454.9 356 64.9
ATR0752G010 Amborella trichopoda HOM05D005739 ORTHO05D007740 7.4e-126 454.5 360 63.6
Os07g0661000 Oryza sativa ssp. japonica HOM05D005739 ORTHO05D007740 2.2e-125 453.0 355 62.3
TPR.G7643 Trifolium pratense HOM05D005739 ORTHO05D007740 4.8e-125 451.8 355 65.4
Lj1C1227G9 Lonicera japonica HOM05D005739 ORTHO05D007740 1.4e-124 450.3 361 66.2
Psat1g181440 Pisum sativum HOM05D005739 ORTHO05D007740 1.8e-124 449.9 354 63.8
Ah.14g088100 Amaranthus hybridus HOM05D005739 ORTHO05D007740 4.1e-124 448.7 436 55.7
HPP92_016316 Vanilla planifolia HOM05D005739 ORTHO05D007740 1.3e-122 443.7 354 62.4
Medtr2g022780 Medicago truncatula HOM05D005739 ORTHO05D007740 8.5e-122 441.0 354 63.8
Manes.16G010200 Manihot esculenta HOM05D005739 ORTHO05D007740 3.2e-121 439.1 315 70.8
AUR62012674 Chenopodium quinoa HOM05D005739 ORTHO05D007740 2.7e-120 436.0 356 63.5
SEGI_12484 Sequoiadendron giganteum HOM05D005739 ORTHO05D007740 9.7e-118 427.6 362 59.9
Medtr4g131840 Medicago truncatula HOM05D005739 ORTHO05D007740 2.8e-117 426.0 336 64.0
Nitab4.5_0002155g0060 Nicotiana tabacum HOM05D005739 ORTHO05D007740 1.8e-116 423.3 402 56.7
AUR62021982 Chenopodium quinoa HOM05D005739 ORTHO05D007740 2.9e-114 416.0 418 54.3
CiPaw.10G069300 Carya illinoinensis HOM05D005739 ORTHO05D007740 3.6e-112 409.1 288 71.5
MBI18_g35070_MAGBIO Magnolia biondii HOM05D005739 ORTHO05D007740 1.1e-110 404.1 313 64.5
CANSAT56G1696 Cannabis sativa HOM05D005739 ORTHO05D007740 4.4e-110 402.1 290 68.6
Sc06g0010750 Simmondsia chinensis HOM05D005739 ORTHO05D007740 4.8e-109 398.7 287 69.0
Dinv17816 Davidia involucrata HOM05D005739 ORTHO05D007740 9.1e-108 394.4 275 73.8
unitig_92.g28118 Utricularia gibba HOM05D005739 ORTHO05D007740 2.0e-107 393.3 320 61.9
Prupe.4G024100 Prunus persica HOM05D005739 ORTHO05D007740 1.2e-104 384.0 276 68.5
SMO343G0036 Selaginella moellendorffii HOM05D005739 ORTHO05D007740 8.0e-104 381.3 352 56.5
Mapoly0023s0135 Marchantia polymorpha HOM05D005739 ORTHO05D007740 4.8e-101 372.1 351 54.1
Dinv20033 Davidia involucrata HOM05D005739 ORTHO05D007740 9.1e-100 367.9 305 64.9
HPP92_016297 Vanilla planifolia HOM05D005739 ORTHO05D007740 2.0e-99 366.7 354 54.8
Aqoxy1G03635 Aquilegia oxysepala HOM05D005739 ORTHO05D007740 2.0e-91 340.1 262 67.2
Hund23487 Selenicereus undatus HOM05D005739 ORTHO05D007740 1.0e-90 337.8 329 56.8
AagrBONN_evm.TU.Sc2ySwM_368.535 Anthoceros agrestis HOM05D005739 ORTHO05D007740 1.5e-86 323.9 351 50.7
Sopen10g001300 Solanum pennellii HOM05D005739 ORTHO05D007740 2.6e-86 323.2 255 63.1
CAN.G105.13 Capsicum annuum HOM05D005739 ORTHO05D007740 2.8e-85 319.7 262 62.2
Pp3c11_7970 Physcomitrium patens HOM05D005739 ORTHO05D007740 6.6e-82 308.5 301 52.8
Cre03.g161000 Chlamydomonas reinhardtii HOM05D005739 ORTHO05D007740 2.6e-70 270.0 441 37.9
arahy.Tifrunner.gnm1.ann1.H0U1UD Arachis hypogaea HOM05D005739 ORTHO05D007740 2.1e-64 250.4 354 45.2
MCO11G903 Micromonas commoda HOM05D005739 ORTHO05D007740 7.8e-59 231.9 353 41.1
arahy.Tifrunner.gnm1.ann1.53BRPK Arachis hypogaea HOM05D005739 ORTHO05D007740 1.2e-51 208.0 176 64.8
arahy.Tifrunner.gnm1.ann1.FSQL8E Arachis hypogaea HOM05D005739 ORTHO05D007740 4.6e-51 206.1 272 48.9
arahy.Tifrunner.gnm1.ann1.Q9UH73 Arachis hypogaea HOM05D005739 ORTHO05D007740 3.0e-50 203.4 352 37.2
arahy.Tifrunner.gnm1.ann1.KZ0328 Arachis hypogaea HOM05D005739 ORTHO05D007740 1.2e-46 191.4 241 50.6
arahy.Tifrunner.gnm1.ann1.7V36PE Arachis hypogaea HOM05D005739 ORTHO05D007740 2.1e-43 180.6 211 52.6
arahy.Tifrunner.gnm1.ann1.0E5R4V Arachis hypogaea HOM05D005739 ORTHO05D007740 1.0e-42 178.3 181 58.6
arahy.Tifrunner.gnm1.ann1.B9PES8 Arachis hypogaea HOM05D005739 ORTHO05D007740 6.6e-42 175.6 181 57.5
arahy.Tifrunner.gnm1.ann1.AD56MI Arachis hypogaea HOM05D005739 ORTHO05D083983 9.9e-38 161.8 245 46.1
CANSAT64G1767 Cannabis sativa HOM05D005739 ORTHO05D033954 5.3e-31 139.4 110 60.9
CANSAT56G0563 Cannabis sativa HOM05D005739 ORTHO05D113818 2.7e-19 100.5 102 52.0
arahy.Tifrunner.gnm1.ann1.39644B Arachis hypogaea HOM05D005739 ORTHO05D007740 6.0e-19 99.4 198 37.9
SEGI_28449 Sequoiadendron giganteum HOM05D005739 ORTHO05D033954 3.1e-15 87.0 75 56.0
RcHm_v2.0_Chr5g0051251 Rosa chinensis HOM05D005739 ORTHO05D033954 8.5e-13 79.0 62 59.7
arahy.Tifrunner.gnm1.ann1.3ZZ8UM Arachis hypogaea HOM05D000187 ORTHO05D000230 3.6e-11 73.6 49 69.4
arahy.Tifrunner.gnm1.ann1.ZUJ3H1 Arachis hypogaea HOM05D005739 ORTHO05D083715 2.8e-08 63.9 35 77.1
Nn1g07096 Nelumbo nucifera HOM05D005739 ORTHO05D007740 1.2e-06 58.5 83 39.8


User provided reference genes

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