Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 9.1e-232 806.6 422 100.0
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 4.2e-205 718.0 422 89.3
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 8.6e-198 693.7 423 85.6
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 1.4e-195 686.4 423 85.8
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 2.0e-191 672.5 424 83.7
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 3.5e-191 671.8 424 83.7
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 9.5e-189 663.7 424 83.3
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 4.9e-185 651.4 424 82.5
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 2.3e-182 642.5 422 81.5
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 7.5e-178 627.5 423 80.9
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 1.9e-173 612.8 423 78.0
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 3.3e-157 558.9 428 70.6
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 3.4e-122 442.6 427 61.4
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 1.0e-118 431.0 428 59.8
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 9.7e-117 424.5 419 60.9
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 2.7e-111 406.4 416 60.6
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 1.1e-107 394.4 417 57.8
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 1.3e-105 387.5 421 56.1
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 2.3e-102 376.7 418 55.5
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 6.1e-87 325.5 427 45.2
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 1.5e-85 320.9 428 45.1
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 7.5e-85 318.5 428 45.8
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 1.7e-84 317.4 429 45.9
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 1.1e-83 314.7 431 45.7
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 5.4e-83 312.4 426 43.9
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 7.0e-83 312.0 436 43.6
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 7.0e-83 312.0 433 43.2
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 9.2e-83 311.6 423 45.2
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 9.2e-83 311.6 439 45.8
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 3.5e-82 309.7 433 44.8
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 8.6e-81 305.1 429 44.1
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 1.2e-79 301.2 433 43.6
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 4.7e-79 299.3 431 42.5
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 1.0e-78 298.1 427 42.9
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 1.8e-78 297.4 430 42.3
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 2.3e-78 297.0 172 89.5
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 4.0e-78 296.2 426 48.6
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 8.9e-78 295.0 433 42.7
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 1.2e-77 294.7 427 43.1
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.3e-76 291.2 444 42.6
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 7.8e-74 282.0 426 43.9
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 5.6e-72 275.8 426 41.8
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 9.5e-72 275.0 423 42.3
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 1.2e-71 274.6 427 41.5
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 4.7e-71 272.7 423 42.8
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 4.7e-71 272.7 427 41.2
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 4.7e-71 272.7 444 39.9
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 1.1e-70 271.6 423 42.8
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.1e-70 271.6 423 42.8
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.4e-70 271.2 399 43.9
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.2e-69 268.1 423 42.3
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.2e-69 268.1 432 40.0
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 2.0e-69 267.3 432 39.8
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 2.6e-69 266.9 436 39.7
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 2.6e-69 266.9 426 41.3
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 4.4e-69 266.2 432 39.6
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 9.8e-69 265.0 431 42.7
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 8.3e-68 261.9 363 44.4
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.4e-67 260.4 423 41.6
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.7e-65 254.2 427 39.8
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 3.0e-65 253.4 457 37.2
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 1.1e-64 251.5 430 39.8
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 3.3e-64 250.0 426 40.6
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 7.3e-64 248.8 447 40.5
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 2.8e-63 246.9 429 41.3
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 4.7e-63 246.1 431 40.8
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 1.8e-62 244.2 425 40.0
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 3.1e-62 243.4 438 37.7
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 3.4e-61 240.0 423 43.5
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 4.4e-61 239.6 427 37.7
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 7.5e-61 238.8 429 39.2
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 2.9e-60 236.9 354 43.2
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 2.9e-60 236.9 426 39.0
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 2.4e-59 233.8 430 36.5
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 3.2e-59 233.4 410 39.8
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 3.2e-59 233.4 437 36.4
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 5.4e-59 232.6 450 36.7
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 1.2e-58 231.5 427 37.2
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 1.2e-58 231.5 438 38.1
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 2.7e-58 230.3 437 36.2
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 4.6e-58 229.6 439 36.4
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 6.0e-58 229.2 439 36.4
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 6.0e-58 229.2 429 38.2
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 7.8e-58 228.8 426 38.3
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.3e-57 228.0 427 38.2
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 3.0e-57 226.9 428 38.1
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 3.9e-57 226.5 429 37.5
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 6.6e-57 225.7 433 39.3
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 8.6e-57 225.3 336 41.7
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.1e-56 224.9 449 35.2
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.5e-56 224.6 414 37.7
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 1.5e-56 224.6 426 35.7
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 1.5e-56 224.6 428 36.9
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 1.5e-56 224.6 426 36.2
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 2.5e-56 223.8 441 37.0
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 3.3e-56 223.4 427 38.9
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 3.3e-56 223.4 427 38.9
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 3.3e-56 223.4 409 40.3
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 5.6e-56 222.6 156 79.5
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 1.6e-55 221.1 156 78.8
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 1.6e-55 221.1 156 78.8
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 2.1e-55 220.7 427 37.7
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 8.1e-55 218.8 426 35.2
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.1e-54 218.4 427 36.1
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 1.4e-54 218.0 156 78.8
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 5.2e-54 216.1 434 37.1
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 1.2e-53 214.9 425 34.4
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 1.2e-53 214.9 405 36.3
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 1.5e-53 214.5 440 35.2
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.5e-53 214.5 397 36.8
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 9.9e-53 211.8 423 36.2
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 4.9e-52 209.5 453 36.2
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 8.4e-52 208.8 437 35.2
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 1.1e-51 208.4 426 35.0
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 1.9e-51 207.6 426 35.2
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 4.2e-51 206.5 315 42.9
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 5.4e-51 206.1 426 35.4
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 1.0e-49 201.8 145 77.9
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 1.7e-49 201.1 449 33.6
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 1.9e-48 197.6 438 35.2
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 2.5e-48 197.2 354 37.3
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 1.2e-47 194.9 194 61.9
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 2.8e-47 193.7 428 37.1
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 2.8e-47 193.7 428 35.0
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 9.0e-46 188.7 486 32.1
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 4.9e-44 183.0 433 33.3
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 1.9e-43 181.0 426 33.8
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 4.6e-42 176.4 414 32.9
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 2.1e-39 167.5 269 41.6
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 2.8e-39 167.2 269 40.9
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 7.6e-37 159.1 174 50.6
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 7.6e-37 159.1 355 33.0
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 3.9e-33 146.7 136 64.7
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 3.3e-32 143.7 340 33.2
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 2.1e-31 141.0 371 31.0
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 1.8e-30 137.9 414 29.5
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 1.3e-28 131.7 414 28.5
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 1.7e-28 131.3 280 35.0
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 6.0e-26 122.9 405 28.9
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 6.5e-20 102.8 221 34.4
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 1.2e-18 98.6 69 66.7
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 1.2e-18 98.6 69 66.7
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.6e-18 98.2 83 62.7
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 6.0e-18 96.3 67 70.1
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 6.0e-18 96.3 67 70.1
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 6.0e-18 96.3 67 70.1
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 1.3e-17 95.1 419 25.1
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 1.9e-16 91.3 62 67.7
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 3.3e-16 90.5 66 68.2
BcaC09g50477 Brassica carinata HOM05D004053 ORTHO05D005065 9.7e-16 89.0 66 65.2
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 4.1e-14 83.6 416 23.3
A01p37840 Brassica napus HOM05D004053 ORTHO05D005065 1.3e-12 78.6 54 68.5
C05p54450 Brassica napus HOM05D021248 ORTHO05D018618 8.5e-12 75.9 60 68.3
C01p45260 Brassica napus HOM05D021248 ORTHO05D018618 1.9e-11 74.7 52 71.2
BolC5t34111H Brassica oleracea HOM05D004053 ORTHO05D018618 1.6e-10 71.6 47 72.3
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 6.1e-10 69.7 83 49.4
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.0e-09 68.9 127 37.0
BolC5t28964H Brassica oleracea HOM05D004053 ORTHO05D005065 2.3e-09 67.8 109 43.1
A04p06740 Brassica napus HOM05D004053 ORTHO05D033555 3.0e-09 67.4 39 76.9
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 3.7e-07 60.5 56 55.4
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 4.8e-07 60.1 267 26.6
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 2.4e-06 57.8 160 28.8


User provided reference genes

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