Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10028671m.g Eutrema salsugineum HOM05D001772 ORTHO05D008903 2.8e-244 848.2 436 100.0
AT4G01040 Arabidopsis thaliana HOM05D001772 ORTHO05D008903 7.2e-216 753.8 409 89.7
Sp6g01100 Schrenkiella parvula HOM05D001772 ORTHO05D008903 2.3e-214 748.8 438 86.1
Carub.0006s3610 Capsella rubella HOM05D001772 ORTHO05D008903 5.7e-213 744.2 409 87.3
CARHR249250 Cardamine hirsuta HOM05D001772 ORTHO05D008903 1.1e-208 729.9 417 84.9
BcaC01g06839 Brassica carinata HOM05D001772 ORTHO05D008903 1.5e-205 719.5 429 83.2
BolC3t16157H Brassica oleracea HOM05D001772 ORTHO05D008903 2.0e-205 719.2 428 83.6
C03p38820 Brassica napus HOM05D001772 ORTHO05D008903 7.5e-205 717.2 428 83.4
BraA03t12356Z Brassica rapa HOM05D001772 ORTHO05D008903 1.1e-203 713.4 428 83.2
BcaB01g02345 Brassica carinata HOM05D001772 ORTHO05D008903 4.1e-203 711.4 428 83.2
Aa31LG5G920 Aethionema arabicum HOM05D001772 ORTHO05D008903 3.5e-202 708.4 438 80.1
A03p31810 Brassica napus HOM05D001772 ORTHO05D008903 3.5e-202 708.4 428 82.2
THA.LOC104825876 Tarenaya hassleriana HOM05D001772 ORTHO05D008903 2.8e-191 672.2 416 76.4
Ciclev10020231m.g Citrus clementina HOM05D001772 ORTHO05D008903 1.1e-166 590.5 416 67.1
GSVIVG01027076001 Vitis vinifera HOM05D001772 ORTHO05D008903 4.0e-166 588.6 407 67.6
Potri.014G096700 Populus trichocarpa HOM05D001772 ORTHO05D008903 9.9e-165 583.9 403 69.5
CSS0012714 Camellia sinensis var. sinensis HOM05D001772 ORTHO05D008903 1.1e-163 580.5 405 67.9
Manes.05G024600 Manihot esculenta HOM05D001772 ORTHO05D008903 1.9e-163 579.7 403 68.7
Gohir.D12G114800 Gossypium hirsutum HOM05D001772 ORTHO05D008903 4.2e-163 578.6 403 68.2
Gohir.A12G111500 Gossypium hirsutum HOM05D001772 ORTHO05D008903 9.2e-163 577.4 403 68.0
Gorai.008G124300 Gossypium raimondii HOM05D001772 ORTHO05D008903 2.1e-162 576.2 403 68.0
TWI59G0809 Tripterygium wilfordii HOM05D001772 ORTHO05D008903 7.8e-162 574.3 410 68.5
Thecc.01G344900 Theobroma cacao HOM05D001772 ORTHO05D008903 2.3e-161 572.8 411 67.4
Sabra14G0070800 Salix brachista HOM05D001772 ORTHO05D008903 1.9e-160 569.7 395 69.4
QL04p013773 Quercus lobata HOM05D001772 ORTHO05D008903 2.5e-160 569.3 403 67.2
Atru.chr5.644 Acer truncatum HOM05D001772 ORTHO05D008903 3.3e-160 568.9 412 67.0
Dinv18731 Davidia involucrata HOM05D001772 ORTHO05D008903 3.3e-160 568.9 411 65.5
TPR.G8988 Trifolium pratense HOM05D001772 ORTHO05D008903 4.8e-159 565.1 394 69.3
RcHm_v2.0_Chr1g0359211 Rosa chinensis HOM05D001772 ORTHO05D008903 6.2e-159 564.7 404 66.3
Cfa003819 Carpinus fangiana HOM05D001772 ORTHO05D008903 8.1e-159 564.3 410 65.9
Prupe.2G185600 Prunus persica HOM05D001772 ORTHO05D008903 3.4e-157 558.9 406 65.0
COL.COLO4_06307 Corchorus olitorius HOM05D001772 ORTHO05D008903 7.6e-157 557.8 416 65.9
CANSAT56G1679 Cannabis sativa HOM05D001772 ORTHO05D008903 4.9e-156 555.1 416 63.9
TAR375G0197 Trochodendron aralioides HOM05D001772 ORTHO05D008903 6.4e-156 554.7 405 65.7
Psat2g145680 Pisum sativum HOM05D001772 ORTHO05D008903 8.4e-156 554.3 392 68.6
Medtr5g025480 Medicago truncatula HOM05D001772 ORTHO05D008903 1.4e-155 553.5 422 65.6
Lalb_Chr04g0261581 Lupinus albus HOM05D001772 ORTHO05D008903 1.9e-155 553.1 392 68.9
Aqoxy7G00133 Aquilegia oxysepala HOM05D001772 ORTHO05D008903 4.2e-155 552.0 403 64.5
VMungo0540G0918 Vigna mungo HOM05D001772 ORTHO05D008903 4.2e-155 552.0 370 69.5
Duzib138G1524 Durio zibethinus HOM05D001772 ORTHO05D008903 7.1e-155 551.2 364 70.6
CANSAT56G1036 Cannabis sativa HOM05D001772 ORTHO05D008903 1.6e-154 550.1 404 65.1
MD07G1147600 Malus domestica HOM05D001772 ORTHO05D008903 4.6e-154 548.5 416 63.9
FvH4_7g16200 Fragaria vesca HOM05D001772 ORTHO05D008903 6.0e-154 548.1 404 66.1
Eucgr.E00067 Eucalyptus grandis HOM05D001772 ORTHO05D008903 7.8e-154 547.7 422 62.6
Lsat_1_v5_gn_3_139600 Lactuca sativa HOM05D001772 ORTHO05D008903 1.7e-153 546.6 407 63.4
vmacro13174 Vaccinium macrocarpon HOM05D001772 ORTHO05D008903 2.3e-153 546.2 416 63.7
Ca_25036_v3 Cicer arietinum L. HOM05D001772 ORTHO05D008903 8.7e-153 544.3 415 64.3
arahy.Tifrunner.gnm1.ann1.HV5NER Arachis hypogaea HOM05D001772 ORTHO05D008903 1.6e-151 540.0 369 68.3
arahy.Tifrunner.gnm1.ann1.NY4TXX Arachis hypogaea HOM05D001772 ORTHO05D008903 2.1e-151 539.7 369 67.8
MD01G1078600 Malus domestica HOM05D001772 ORTHO05D008903 1.4e-150 537.0 398 64.6
FAN03G0169 Fragaria x ananassa HOM05D001772 ORTHO05D008903 5.8e-149 531.6 404 64.1
Lj1g0009750 Lotus japonicus HOM05D001772 ORTHO05D008903 1.3e-148 530.4 385 66.0
Cc02_g39160 Coffea canephora HOM05D001772 ORTHO05D008903 2.9e-148 529.3 413 62.5
FAN01G1646 Fragaria x ananassa HOM05D001772 ORTHO05D008903 2.9e-148 529.3 403 64.3
Nn3g19051 Nelumbo nucifera HOM05D001772 ORTHO05D008903 7.1e-147 524.6 405 61.5
FAN06G2365 Fragaria x ananassa HOM05D001772 ORTHO05D008903 1.6e-146 523.5 398 64.8
PGR042G2345 Punica granatum HOM05D001772 ORTHO05D008903 3.5e-146 522.3 415 60.5
Glyma.03G256800 Glycine max HOM05D001772 ORTHO05D008903 7.9e-146 521.2 385 66.0
EL10Ac1g00295 Beta vulgaris HOM05D001772 ORTHO05D008903 1.0e-145 520.8 395 63.3
FAN06G4998 Fragaria x ananassa HOM05D001772 ORTHO05D008903 1.8e-145 520.0 403 64.3
Rhsim07G0005700 Rhododendron simsii HOM05D001772 ORTHO05D008903 3.0e-145 519.2 405 62.2
Haze_15635 Corylus avellana HOM05D001772 ORTHO05D008903 3.9e-145 518.8 431 60.1
CSS0002891 Camellia sinensis var. sinensis HOM05D001772 ORTHO05D008903 5.1e-145 518.5 369 66.4
FAN10G2954 Fragaria x ananassa HOM05D001772 ORTHO05D008903 6.7e-145 518.1 399 63.9
CsaV3_3G008150 Cucumis sativus L. HOM05D001772 ORTHO05D008903 5.6e-144 515.0 403 63.0
Sopen05g028720 Solanum pennellii HOM05D001772 ORTHO05D008903 2.1e-143 513.1 421 57.7
ClCG05G000920 Citrullus lanatus HOM05D001772 ORTHO05D008903 2.8e-143 512.7 398 62.3
PSO135G0498 Papaver somniferum HOM05D001772 ORTHO05D008903 6.2e-143 511.5 392 61.2
AUR62004469 Chenopodium quinoa HOM05D001772 ORTHO05D008903 1.1e-142 510.8 405 61.5
AUR62023481 Chenopodium quinoa HOM05D001772 ORTHO05D008903 1.1e-142 510.8 405 61.2
Migut.N01555 Erythranthe guttata HOM05D001772 ORTHO05D008903 1.4e-142 510.4 412 58.3
PSO384G4631 Papaver somniferum HOM05D001772 ORTHO05D008903 9.0e-142 507.7 392 61.7
CAN.G239.5 Capsicum annuum HOM05D001772 ORTHO05D008903 1.2e-141 507.3 409 57.9
Sc01g0002840 Simmondsia chinensis HOM05D001772 ORTHO05D008903 1.0e-140 504.2 403 60.8
Oeu007903.1 Olea europaea HOM05D001772 ORTHO05D008903 4.9e-140 501.9 428 56.8
Ah.05g179760 Amaranthus hybridus HOM05D001772 ORTHO05D008903 2.5e-139 499.6 402 61.4
PGSC0003DMG402033880 Solanum tuberosum HOM05D001772 ORTHO05D008903 2.5e-139 499.6 416 57.7
Sed0004684 Sechium edule HOM05D001772 ORTHO05D008903 7.1e-139 498.0 391 63.2
HanXRQChr11g0353031 Helianthus annuus HOM05D001772 ORTHO05D008903 2.1e-138 496.5 403 59.1
MBI06_g46729_MAGBIO Magnolia biondii HOM05D001772 ORTHO05D008903 2.1e-138 496.5 436 56.2
Phvul.006G111900 Phaseolus vulgaris HOM05D001772 ORTHO05D008903 1.0e-137 494.2 321 72.6
Solyc05g050320.4 Solanum lycopersicum HOM05D001772 ORTHO05D008903 3.9e-137 492.3 362 61.9
SalBow5G1378 Salvia bowleyana HOM05D001772 ORTHO05D008903 6.7e-137 491.5 429 55.9
Hund27212 Selenicereus undatus HOM05D001772 ORTHO05D008903 9.6e-136 487.6 433 56.4
SGA_v2.0_scaffold11G05728 Striga asiatica HOM05D001772 ORTHO05D008903 9.6e-136 487.6 386 58.3
AL6G52340 Arabidopsis lyrata HOM05D001772 ORTHO05D008903 3.1e-134 482.6 253 90.9
Peaxi162Scf00403g00519 Petunia axillaris HOM05D001772 ORTHO05D008903 2.9e-132 476.1 402 55.2
Zm00001eb358410 Zea mays HOM05D001772 ORTHO05D008903 5.1e-129 465.3 418 54.5
DCAR_005380 Daucus carota HOM05D001772 ORTHO05D008903 5.7e-128 461.8 484 49.0
Lj9A595T55 Lonicera japonica HOM05D001772 ORTHO05D008903 7.4e-128 461.5 322 65.5
MELO3C006034.2 Cucumis melo HOM05D001772 ORTHO05D008903 1.3e-127 460.7 416 57.0
Cpa.g.sc273.9 Carica papaya HOM05D001772 ORTHO05D008903 1.6e-127 460.3 322 69.3
CDE10G0091 Ceratophyllum demersum HOM05D001772 ORTHO05D008903 2.4e-126 456.4 402 56.0
Nitab4.5_0000258g0130 Nicotiana tabacum HOM05D001772 ORTHO05D008903 7.7e-125 451.4 434 51.2
ECA240G4072 Erigeron canadensis HOM05D001772 ORTHO05D008903 2.2e-124 449.9 347 60.8
HPP92_005515 Vanilla planifolia HOM05D001772 ORTHO05D008903 5.5e-123 445.3 407 55.0
Pp3c22_2040 Physcomitrium patens HOM05D001772 ORTHO05D008903 7.7e-101 371.7 367 51.2
SEGI_01392 Sequoiadendron giganteum HOM05D001772 ORTHO05D008903 1.4e-94 350.9 332 53.3
Actinidia10113 Actinidia chinensis HOM05D001772 ORTHO05D008903 5.2e-89 332.4 247 63.6
AagrBONN_evm.TU.Sc2ySwM_344.1652 Anthoceros agrestis HOM05D001772 ORTHO05D008903 2.2e-87 327.0 414 42.8
Mapoly0102s0038 Marchantia polymorpha HOM05D001772 ORTHO05D008903 1.6e-85 320.9 341 46.0
SMO167G0031 Selaginella moellendorffii HOM05D001772 ORTHO05D008903 1.4e-78 297.7 327 46.8
SMO347G0199 Selaginella moellendorffii HOM05D001772 ORTHO05D008903 1.8e-78 297.4 343 45.5
CBR_g3968 Chara braunii HOM05D001772 ORTHO05D008903 8.6e-76 288.5 401 38.7
CiPaw.01G074400 Carya illinoinensis HOM05D001772 ORTHO05D008903 9.5e-75 285.0 211 63.5
Nitab4.5_0004506g0060 Nicotiana tabacum HOM05D001772 ORTHO05D008903 5.2e-73 279.3 433 37.4
Cre03.g200650 Chlamydomonas reinhardtii HOM05D001772 ORTHO05D008903 2.3e-57 227.3 376 32.7
ATR0589G019 Amborella trichopoda HOM05D001772 ORTHO05D008903 8.4e-47 192.2 177 54.2
Os01g0619800 Oryza sativa ssp. japonica HOM05D001772 ORTHO05D008903 3.3e-43 180.3 132 61.4
Nitab4.5_0015177g0010 Nicotiana tabacum HOM05D001772 ORTHO05D000634 1.1e-30 138.7 117 59.0
Zm00001eb297790 Zea mays HOM05D001772 ORTHO05D023027 6.0e-29 132.9 118 55.9
Glyma.19G255000 Glycine max HOM05D001772 ORTHO05D008903 6.9e-17 92.8 59 69.5
Nitab4.5_0015177g0020 Nicotiana tabacum HOM05D001772 ORTHO05D008903 7.9e-13 79.3 50 62.0
Zm00001eb098470 Zea mays HOM05D001772 ORTHO05D008903 9.4e-06 55.8 50 52.0


User provided reference genes

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