Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10028604m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 5.8e-254 880.6 494 100.0
CARHR254530 Cardamine hirsuta HOM05D002977 ORTHO05D003225 2.7e-182 642.5 495 76.8
BraA09t38300Z Brassica rapa HOM05D002977 ORTHO05D003225 1.0e-178 630.6 500 76.2
Sp6g05680 Schrenkiella parvula HOM05D002977 ORTHO05D003225 2.6e-177 625.9 501 75.6
A09p27340 Brassica napus HOM05D002977 ORTHO05D003225 1.4e-175 620.2 498 75.9
BcaB05g23809 Brassica carinata HOM05D002977 ORTHO05D003225 2.4e-175 619.4 506 76.1
C09p34660 Brassica napus HOM05D002977 ORTHO05D003225 2.3e-173 612.8 497 75.3
BcaB01g01677 Brassica carinata HOM05D002977 ORTHO05D003225 8.6e-173 610.9 493 76.1
AT4G11780 Arabidopsis thaliana HOM05D002977 ORTHO05D003225 3.6e-171 605.5 499 76.6
BolC9t56312H Brassica oleracea HOM05D002977 ORTHO05D003225 3.0e-170 602.4 513 72.9
A02p26000 Brassica napus HOM05D002977 ORTHO05D003225 1.5e-164 583.6 503 74.6
AL6G46490 Arabidopsis lyrata HOM05D002977 ORTHO05D003225 1.2e-163 580.5 500 74.2
BcaC03g16329 Brassica carinata HOM05D002977 ORTHO05D003225 3.4e-161 572.4 498 73.7
C02p41490 Brassica napus HOM05D002977 ORTHO05D003225 3.4e-161 572.4 498 73.7
BraA02t07599Z Brassica rapa HOM05D002977 ORTHO05D003225 4.4e-161 572.0 511 73.0
Carub.0006s3089 Capsella rubella HOM05D002977 ORTHO05D003225 1.8e-159 566.6 515 71.8
Aa31LG9G10650 Aethionema arabicum HOM05D002977 ORTHO05D003225 1.1e-143 514.2 501 64.1
BolC2t10166H Brassica oleracea HOM05D002977 ORTHO05D003225 1.9e-143 513.5 527 66.6
Sp7g21110 Schrenkiella parvula HOM05D002977 ORTHO05D003225 1.5e-108 397.5 511 52.6
Thhalv10025169m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 2.7e-102 376.7 511 51.1
AT4G23020 Arabidopsis thaliana HOM05D002977 ORTHO05D003225 6.9e-98 362.1 500 49.4
CARHR230080 Cardamine hirsuta HOM05D002977 ORTHO05D003225 1.5e-97 360.9 497 49.7
THA.LOC104806370 Tarenaya hassleriana HOM05D002977 ORTHO05D003225 1.0e-96 358.2 515 51.7
C01p17640 Brassica napus HOM05D002977 ORTHO05D003225 2.0e-92 344.0 515 48.5
A01p14320 Brassica napus HOM05D002977 ORTHO05D003225 1.3e-91 341.3 504 47.2
Carub.0007s1825 Capsella rubella HOM05D002977 ORTHO05D003225 6.9e-90 335.5 515 46.4
BcaC09g51034 Brassica carinata HOM05D002977 ORTHO05D003225 5.0e-88 329.3 492 47.8
BraA01t01377Z Brassica rapa HOM05D002977 ORTHO05D003225 4.4e-84 316.2 542 44.3
AL7G30500 Arabidopsis lyrata HOM05D002977 ORTHO05D003225 4.5e-81 306.2 508 44.1
Potri.001G110900 Populus trichocarpa HOM05D002977 ORTHO05D003225 5.2e-45 186.4 523 34.4
Sabra01G0084500 Salix brachista HOM05D002977 ORTHO05D003225 9.8e-44 182.2 525 34.3
BcaB03g11755 Brassica carinata HOM05D002977 ORTHO05D003225 1.4e-42 178.3 394 41.4
TWI81G0253 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 7.0e-42 176.0 508 32.5
Gorai.004G207700 Gossypium raimondii HOM05D002977 ORTHO05D003225 3.5e-41 173.7 504 34.1
Potri.003G121100 Populus trichocarpa HOM05D002977 ORTHO05D003225 6.0e-41 172.9 505 33.9
Atru.chr9.1537 Acer truncatum HOM05D002977 ORTHO05D003225 7.8e-41 172.6 501 32.5
Duzib205G0359 Durio zibethinus HOM05D002977 ORTHO05D003225 7.8e-41 172.6 530 33.4
Sabra03G0085100 Salix brachista HOM05D002977 ORTHO05D003225 1.3e-40 171.8 505 33.3
Duzib084G1184 Durio zibethinus HOM05D002977 ORTHO05D003225 8.6e-40 169.1 522 31.0
Dinv37695 Davidia involucrata HOM05D002977 ORTHO05D003225 1.5e-39 168.3 502 31.5
Gohir.A08G178500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 1.5e-39 168.3 499 33.1
PGR042G2476 Punica granatum HOM05D002977 ORTHO05D003225 4.3e-39 166.8 532 30.6
Gohir.D08G197000 Gossypium hirsutum HOM05D002977 ORTHO05D003225 2.1e-38 164.5 503 33.0
COL.COLO4_05272 Corchorus olitorius HOM05D002977 ORTHO05D003225 3.6e-38 163.7 494 31.8
C03p84550 Brassica napus HOM05D002977 ORTHO05D003225 1.4e-37 161.8 166 53.6
Thecc.03G270800 Theobroma cacao HOM05D002977 ORTHO05D003225 1.8e-37 161.4 509 31.0
Cfa012096 Carpinus fangiana HOM05D002524 ORTHO05D002718 2.0e-36 157.9 516 33.9
Prupe.5G089800 Prunus persica HOM05D002977 ORTHO05D003225 1.3e-35 155.2 514 30.5
Ah.02g116430 Amaranthus hybridus HOM05D002977 ORTHO05D003225 2.9e-35 154.1 531 29.9
CANSAT21G2154 Cannabis sativa HOM05D002977 ORTHO05D003225 3.2e-34 150.6 510 30.2
Haze_08955 Corylus avellana HOM05D002977 ORTHO05D003225 3.5e-33 147.1 523 32.3
Manes.02G027900 Manihot esculenta HOM05D002977 ORTHO05D003225 6.0e-33 146.4 534 31.1
QL12p017099 Quercus lobata HOM05D002977 ORTHO05D003225 7.8e-33 146.0 548 29.2
Manes.01G067700 Manihot esculenta HOM05D002977 ORTHO05D003225 1.7e-32 144.8 501 30.7
Peaxi162Scf00714g00621 Petunia axillaris HOM05D002977 ORTHO05D003225 1.7e-32 144.8 500 28.4
TWI60G0323 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 3.9e-32 143.7 530 29.4
Cc08_g13950 Coffea canephora HOM05D002977 ORTHO05D003225 6.6e-32 142.9 490 27.3
FAN18G2499 Fragaria x ananassa HOM05D002524 ORTHO05D002718 1.9e-31 141.4 552 31.9
FvH4_5g01430 Fragaria vesca HOM05D002977 ORTHO05D003225 5.6e-31 139.8 541 32.5
Glyma.05G050000 Glycine max HOM05D002977 ORTHO05D003225 5.6e-31 139.8 522 29.9
AUR62010660 Chenopodium quinoa HOM05D002977 ORTHO05D003225 2.8e-30 137.5 509 27.7
RcHm_v2.0_Chr7g0199421 Rosa chinensis HOM05D002977 ORTHO05D003225 3.6e-30 137.1 545 30.6
Glyma.17G132000 Glycine max HOM05D002977 ORTHO05D003225 8.1e-30 136.0 514 30.0
Solyc08g080280.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 1.8e-29 134.8 505 28.1
CAN.G981.38 Capsicum annuum HOM05D002977 ORTHO05D003225 3.1e-29 134.0 509 31.2
FAN04G2551 Fragaria x ananassa HOM05D002524 ORTHO05D002718 4.0e-29 133.7 542 32.5
Psat4g067560 Pisum sativum HOM05D002977 ORTHO05D003225 1.2e-28 132.1 519 30.8
SGA_v2.0_scaffold196G40889 Striga asiatica HOM05D002977 ORTHO05D003225 1.2e-28 132.1 501 27.7
TPR.G37675 Trifolium pratense HOM05D002977 ORTHO05D003225 2.6e-28 131.0 518 32.0
Ca_20242_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 3.4e-28 130.6 502 28.9
Ca_29496_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 3.4e-28 130.6 502 28.9
Medtr4g102650 Medicago truncatula HOM05D002977 ORTHO05D003225 9.9e-28 129.0 516 30.2
Sopen08g028630 Solanum pennellii HOM05D002977 ORTHO05D003225 9.9e-28 129.0 501 27.5
BolC3t20745H Brassica oleracea HOM05D002977 ORTHO05D003225 2.2e-27 127.9 124 55.6
CiPaw.11G141500 Carya illinoinensis HOM05D002977 ORTHO05D003225 6.4e-27 126.3 544 30.9
Actinidia02049 Actinidia chinensis HOM05D002977 ORTHO05D003225 1.1e-26 125.6 506 29.6
Nitab4.5_0011100g0010 Nicotiana tabacum HOM05D002977 ORTHO05D003225 1.1e-26 125.6 530 30.9
CsaV3_5G003260 Cucumis sativus L. HOM05D002977 ORTHO05D003225 1.4e-26 125.2 525 28.0
Migut.E01299 Erythranthe guttata HOM05D002977 ORTHO05D003225 1.9e-26 124.8 509 28.1
Nn6g34271 Nelumbo nucifera HOM05D002977 ORTHO05D003225 2.4e-26 124.4 510 30.0
Nitab4.5_0001714g0160 Nicotiana tabacum HOM05D002977 ORTHO05D003225 2.4e-26 124.4 533 31.0
Aqoxy7G00463 Aquilegia oxysepala HOM05D002977 ORTHO05D003225 5.4e-26 123.2 509 27.7
MELO3C005628.2 Cucumis melo HOM05D002977 ORTHO05D003225 7.1e-26 122.9 519 28.9
VMungo1215G3066 Vigna mungo HOM05D002977 ORTHO05D003225 7.1e-26 122.9 517 29.4
Lsat_1_v5_gn_6_13021 Lactuca sativa HOM05D002977 ORTHO05D003225 9.2e-26 122.5 521 25.5
FAN13G0210 Fragaria x ananassa HOM05D002524 ORTHO05D002718 3.5e-25 120.6 481 31.2
Ah.12g057650 Amaranthus hybridus HOM05D002977 ORTHO05D003225 4.6e-25 120.2 499 27.3
Phvul.003G212900 Phaseolus vulgaris HOM05D002977 ORTHO05D003225 4.6e-25 120.2 524 30.5
Lj2A196T48 Lonicera japonica HOM05D002977 ORTHO05D003225 7.8e-25 119.4 376 30.3
FAN08G2595 Fragaria x ananassa HOM05D002524 ORTHO05D002718 1.3e-24 118.6 491 31.2
PGSC0003DMG400022757 Solanum tuberosum HOM05D002977 ORTHO05D003225 1.3e-24 118.6 510 28.2
Dinv39013 Davidia involucrata HOM05D002977 ORTHO05D003225 1.7e-24 118.2 414 32.1
Hund28360 Selenicereus undatus HOM05D002977 ORTHO05D003225 1.7e-24 118.2 505 27.1
Hund28364 Selenicereus undatus HOM05D002977 ORTHO05D003225 1.7e-24 118.2 505 27.1
HanXRQChr07g0188421 Helianthus annuus HOM05D002977 ORTHO05D003225 3.0e-24 117.5 493 27.2
Lalb_Chr05g0225091 Lupinus albus HOM05D002977 ORTHO05D003225 8.6e-24 115.9 507 28.8
arahy.Tifrunner.gnm1.ann1.ELA92E Arachis hypogaea HOM05D002977 ORTHO05D003225 1.1e-23 115.5 513 32.6
CiPaw.12G098800 Carya illinoinensis HOM05D002977 ORTHO05D003225 1.9e-23 114.8 550 29.8
BcaNung01001 Brassica carinata HOM05D002977 ORTHO05D003225 2.5e-23 114.4 117 59.0
MSTRG.25572 Avicennia marina HOM05D002977 ORTHO05D003225 4.3e-23 113.6 509 25.1
ECA233G2885 Erigeron canadensis HOM05D002977 ORTHO05D003225 4.3e-23 113.6 504 25.0
arahy.Tifrunner.gnm1.ann1.BQI3IB Arachis hypogaea HOM05D002977 ORTHO05D003225 1.2e-22 112.1 515 31.8
ClCG01G003130 Citrullus lanatus HOM05D002977 ORTHO05D003225 2.1e-22 111.3 499 27.1
Lj4g0001816 Lotus japonicus HOM05D002977 ORTHO05D003225 8.1e-22 109.4 501 27.3
Gohir.D12G227500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 1.4e-21 108.6 445 29.2
Gohir.A12G224700 Gossypium hirsutum HOM05D002977 ORTHO05D003225 4.0e-21 107.1 445 28.8
DCAR_006762 Daucus carota HOM05D002977 ORTHO05D003225 1.2e-20 105.5 431 29.5
Gorai.008G243500 Gossypium raimondii HOM05D002977 ORTHO05D003225 1.2e-20 105.5 445 28.5
Sed0005409 Sechium edule HOM05D002977 ORTHO05D003225 2.0e-20 104.8 500 27.8
Ciclev10023310m.g Citrus clementina HOM05D002977 ORTHO05D003225 4.4e-20 103.6 208 33.2
MBI12_g11809_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 2.9e-19 100.9 498 28.7
GSVIVG01019863001 Vitis vinifera HOM05D002977 ORTHO05D003225 1.9e-18 98.2 177 40.1
MBI04_g42596_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 2.4e-18 97.8 505 30.3
Nn1g01342 Nelumbo nucifera HOM05D002977 ORTHO05D003225 1.2e-17 95.5 530 26.8
SGA_v2.0_scaffold286G47104 Striga asiatica HOM05D002977 ORTHO05D003225 1.7e-16 91.7 507 25.2
CSS0002536 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 6.6e-16 89.7 459 27.2
Ciclev10023936m.g Citrus clementina HOM05D002977 ORTHO05D003225 6.6e-16 89.7 134 44.0
TAR629G3293 Trochodendron aralioides HOM05D002977 ORTHO05D003225 1.1e-15 89.0 426 26.3
AUR62017299 Chenopodium quinoa HOM05D002977 ORTHO05D003225 2.1e-14 84.7 406 23.9
Thecc.01G369200 Theobroma cacao HOM05D002977 ORTHO05D003225 6.2e-14 83.2 505 25.5
MD04G1068300 Malus domestica HOM05D002977 ORTHO05D003225 1.8e-13 81.6 206 36.4
GSVIVG01027598001 Vitis vinifera HOM05D002977 ORTHO05D003225 2.4e-13 81.3 472 25.4
Sabra02G0121100 Salix brachista HOM05D002977 ORTHO05D003225 5.3e-13 80.1 527 24.5
CSS0040991 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 2.6e-12 77.8 495 25.5
Duzib138G0317 Durio zibethinus HOM05D002977 ORTHO05D003225 4.4e-12 77.0 538 24.7
COL.COLO4_06963 Corchorus olitorius HOM05D002977 ORTHO05D003225 7.6e-12 76.3 510 25.5
Potri.002G152700 Populus trichocarpa HOM05D002977 ORTHO05D003225 2.2e-11 74.7 510 23.7
Dinv43754 Davidia involucrata HOM05D002977 ORTHO05D003225 6.4e-11 73.2 305 29.2
Migut.A00919 Erythranthe guttata HOM05D002977 ORTHO05D003225 8.4e-11 72.8 506 23.5
Hma1.2p1_0132F.1_g060810 Hydrangea macrophylla HOM05D002977 ORTHO05D003225 1.4e-10 72.0 462 26.4
Lalb_Chr16g0379981 Lupinus albus HOM05D002977 ORTHO05D003225 1.6e-09 68.6 185 34.1
PSO478G2989 Papaver somniferum HOM05D002977 ORTHO05D003225 6.0e-09 66.6 578 23.7
Solyc01g091830.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 7.8e-09 66.2 500 24.2
Sopen01g037600 Solanum pennellii HOM05D002977 ORTHO05D003225 7.8e-09 66.2 506 24.7
Cpa.g.sc74.83 Carica papaya HOM05D002977 ORTHO05D003225 1.3e-08 65.5 185 31.9
ECA246G0913 Erigeron canadensis HOM05D002977 ORTHO05D003225 2.3e-08 64.7 475 24.4
Oeu062354.1 Olea europaea HOM05D002977 ORTHO05D003225 2.3e-08 64.7 103 41.7
Peaxi162Scf00233g00015 Petunia axillaris HOM05D002977 ORTHO05D003225 2.3e-08 64.7 507 24.9
Sc01g0008790 Simmondsia chinensis HOM05D002977 ORTHO05D003225 3.0e-08 64.3 118 39.8
Peaxi162Scf00021g00041 Petunia axillaris HOM05D002977 ORTHO05D003225 1.1e-07 62.4 510 23.3
PSO782G0819 Papaver somniferum HOM05D002977 ORTHO05D003225 1.9e-07 61.6 577 23.2
Lj2C196G7 Lonicera japonica HOM05D002977 ORTHO05D003225 9.6e-07 59.3 90 37.8
Cpa.g.c33531 Carica papaya HOM05D002977 ORTHO05D003225 1.3e-06 58.9 487 24.0
Lsat_1_v5_gn_3_5860 Lactuca sativa HOM05D002524 ORTHO05D002718 2.8e-06 57.8 444 27.3
vmacro20976 Vaccinium macrocarpon HOM05D002977 ORTHO05D003225 3.6e-06 57.4 450 23.6
CDE04G2014 Ceratophyllum demersum HOM05D003485 ORTHO05D004004 4.8e-06 57.0 223 27.8
PGSC0003DMG400017053 Solanum tuberosum HOM05D002977 ORTHO05D003225 4.8e-06 57.0 238 26.1
Atru.chr5.400 Acer truncatum HOM05D002977 ORTHO05D003225 8.1e-06 56.2 160 31.9


User provided reference genes

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