Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10028537m.g Eutrema salsugineum HOM05D007750 ORTHO05D009803 3.9e-108 396.4 204 100.0
Sp6g05780 Schrenkiella parvula HOM05D007750 ORTHO05D009803 1.2e-88 331.6 201 84.6
Carub.0006s3078 Capsella rubella HOM05D007750 ORTHO05D009803 8.4e-87 325.5 204 81.9
CARHR254670 Cardamine hirsuta HOM05D007750 ORTHO05D009803 2.7e-85 320.5 205 81.0
Aa31LG9G10670 Aethionema arabicum HOM05D007750 ORTHO05D009803 3.5e-85 320.1 203 79.8
BraA09t38312Z Brassica rapa HOM05D007750 ORTHO05D009803 1.5e-83 314.7 204 78.4
C09p34750 Brassica napus HOM05D007750 ORTHO05D009803 1.3e-82 311.6 204 77.5
BolC9t56321H Brassica oleracea HOM05D007750 ORTHO05D009803 1.3e-82 311.6 204 77.5
A09p27430 Brassica napus HOM05D007750 ORTHO05D009803 8.1e-82 308.9 204 77.0
AT4G11690 Arabidopsis thaliana HOM05D007750 ORTHO05D009803 3.6e-74 283.5 205 73.2
THA.LOC104801704 Tarenaya hassleriana HOM05D007750 ORTHO05D009803 9.3e-70 268.9 204 70.1
BcaB01g01674 Brassica carinata HOM05D007750 ORTHO05D009803 3.1e-57 227.3 191 65.4
Gorai.003G131800 Gossypium raimondii HOM05D007750 ORTHO05D009803 5.5e-54 216.5 200 57.5
CiPaw.13G094000 Carya illinoinensis HOM05D007750 ORTHO05D009803 7.2e-54 216.1 203 55.2
Gohir.D03G125600 Gossypium hirsutum HOM05D007750 ORTHO05D009803 9.3e-54 215.7 200 57.5
Gohir.A03G042099 Gossypium hirsutum HOM05D007750 ORTHO05D009803 2.1e-53 214.5 200 56.5
Manes.02G132900 Manihot esculenta HOM05D007750 ORTHO05D009803 2.1e-53 214.5 197 57.9
QL01p031803 Quercus lobata HOM05D007750 ORTHO05D009803 6.1e-53 213.0 198 54.5
GSVIVG01024955001 Vitis vinifera HOM05D007750 ORTHO05D009803 1.0e-52 212.2 202 54.5
Haze_24099 Corylus avellana HOM05D007750 ORTHO05D009803 5.1e-52 209.9 200 54.5
CSS0037746 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 4.3e-51 206.8 196 54.1
Cpa.g.sc81.142 Carica papaya HOM05D007750 ORTHO05D009803 4.3e-51 206.8 193 53.4
Thecc.09G321000 Theobroma cacao HOM05D007750 ORTHO05D009803 4.3e-51 206.8 193 54.9
Duzib150G0757 Durio zibethinus HOM05D007750 ORTHO05D009803 1.3e-50 205.3 201 53.2
Atru.chr3.3911 Acer truncatum HOM05D007750 ORTHO05D009803 2.2e-50 204.5 203 53.7
Cfa011507 Carpinus fangiana HOM05D007750 ORTHO05D009803 3.7e-50 203.8 200 52.5
RcHm_v2.0_Chr5g0064911 Rosa chinensis HOM05D007750 ORTHO05D009803 2.4e-49 201.1 200 54.0
FvH4_3g36170 Fragaria vesca HOM05D007750 ORTHO05D009803 5.3e-49 199.9 206 52.9
PGSC0003DMG400022754 Solanum tuberosum HOM05D007750 ORTHO05D009803 1.2e-48 198.7 204 51.0
TAR623G1496 Trochodendron aralioides HOM05D007750 ORTHO05D009803 1.2e-48 198.7 203 51.2
Prupe.6G076800 Prunus persica HOM05D007750 ORTHO05D009803 1.5e-48 198.4 199 53.3
FAN16G0393 Fragaria x ananassa HOM05D007750 ORTHO05D009803 5.9e-48 196.4 192 54.7
Sopen08g028580 Solanum pennellii HOM05D007750 ORTHO05D009803 1.0e-47 195.7 204 51.5
FAN25G2068 Fragaria x ananassa HOM05D007750 ORTHO05D009803 1.3e-47 195.3 192 54.2
FAN21G3841 Fragaria x ananassa HOM05D007750 ORTHO05D009803 2.9e-47 194.1 192 54.2
TPR.G7494 Trifolium pratense HOM05D007750 ORTHO05D009803 2.9e-47 194.1 202 50.0
FAN11G0214 Fragaria x ananassa HOM05D007750 ORTHO05D009803 5.0e-47 193.4 192 54.7
Lj2g0016115 Lotus japonicus HOM05D007750 ORTHO05D009803 5.0e-47 193.4 202 51.0
Ca_04398_v3 Cicer arietinum L. HOM05D007750 ORTHO05D009803 6.5e-47 193.0 200 52.5
CAN.G981.43 Capsicum annuum HOM05D007750 ORTHO05D009803 1.9e-46 191.4 203 50.7
Migut.N02392 Erythranthe guttata HOM05D007750 ORTHO05D009803 3.2e-46 190.7 205 46.3
MD03G1092900 Malus domestica HOM05D007750 ORTHO05D009803 1.6e-45 188.3 196 51.0
Medtr6g022260 Medicago truncatula HOM05D007750 ORTHO05D009803 1.6e-45 188.3 201 50.7
Phvul.003G092000 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 2.7e-45 187.6 201 49.8
Psat1g083360 Pisum sativum HOM05D007750 ORTHO05D009803 4.6e-45 186.8 200 50.0
Phvul.003G091900 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 6.1e-45 186.4 206 48.5
RcHm_v2.0_Chr5g0064671 Rosa chinensis HOM05D007750 ORTHO05D009803 7.9e-45 186.0 192 53.1
CSS0028051 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 1.1e-43 182.2 181 51.4
CANSAT54G1947 Cannabis sativa HOM05D007750 ORTHO05D009803 1.1e-43 182.2 206 49.0
Nn1g04208 Nelumbo nucifera HOM05D007750 ORTHO05D009803 2.5e-43 181.0 197 47.7
Cc01_g12900 Coffea canephora HOM05D007750 ORTHO05D009803 5.7e-43 179.9 197 47.2
Potri.017G131600 Populus trichocarpa HOM05D007750 ORTHO05D009803 5.7e-43 179.9 200 49.5
Aqoxy496s001 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 1.7e-42 178.3 197 46.7
Aqoxy4G02931 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 1.7e-42 178.3 197 46.7
Glyma.07G217200 Glycine max HOM05D007750 ORTHO05D009803 2.8e-42 177.6 203 47.8
Lalb_Chr12g0196171 Lupinus albus HOM05D007750 ORTHO05D009803 3.7e-42 177.2 208 46.2
Glyma.06G033500 Glycine max HOM05D007750 ORTHO05D009803 6.3e-42 176.4 203 47.8
Aqoxy7G03815 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 1.1e-41 175.6 197 45.7
VMungo1215G1573 Vigna mungo HOM05D007750 ORTHO05D009803 4.1e-41 173.7 191 48.7
MBI14_g36920_MAGBIO Magnolia biondii HOM05D002509 ORTHO05D002758 9.1e-41 172.6 199 44.2
arahy.Tifrunner.gnm1.ann1.7C1NTJ Arachis hypogaea HOM05D007750 ORTHO05D009803 1.7e-39 168.3 191 50.3
Glyma.17G016400 Glycine max HOM05D007750 ORTHO05D009803 1.7e-39 168.3 203 45.8
arahy.Tifrunner.gnm1.ann1.T5BWJF Arachis hypogaea HOM05D007750 ORTHO05D009803 5.0e-39 166.8 196 49.0
SalBow3G4043 Salvia bowleyana HOM05D007750 ORTHO05D009803 4.2e-38 163.7 204 43.1
SGA_v2.0_scaffold9G04983 Striga asiatica HOM05D007750 ORTHO05D009803 7.2e-38 162.9 201 42.8
AL6G46300 Arabidopsis lyrata HOM05D007750 ORTHO05D009803 5.7e-35 153.3 85 84.7
AL6G46430 Arabidopsis lyrata HOM05D007750 ORTHO05D009803 5.7e-35 153.3 85 84.7
Sc21g0005800 Simmondsia chinensis HOM05D007750 ORTHO05D009803 1.3e-34 152.1 198 44.4
Rhsim13G0082600 Rhododendron simsii HOM05D007750 ORTHO05D009803 1.8e-33 148.3 153 51.0
COL.COLO4_18513 Corchorus olitorius HOM05D007750 ORTHO05D009803 4.7e-29 133.7 197 39.6
PGR083G0657 Punica granatum HOM05D007750 ORTHO05D009803 1.0e-28 132.5 203 42.9
Sabra17G0109600 Salix brachista HOM05D007750 ORTHO05D009803 1.8e-28 131.7 113 55.8
AUR62018631 Chenopodium quinoa HOM05D007750 ORTHO05D009803 1.1e-27 129.0 173 43.4
ATR0559G149 Amborella trichopoda HOM05D007750 ORTHO05D009803 1.3e-26 125.6 199 35.7
Actinidia07034 Actinidia chinensis HOM05D007750 ORTHO05D009803 1.7e-26 125.2 206 39.8
Lj1P153T20 Lonicera japonica HOM05D007750 ORTHO05D009803 2.2e-26 124.8 109 51.4
Ciclev10030066m.g Citrus clementina HOM05D007750 ORTHO05D009803 2.8e-26 124.4 205 40.5
Glyma.07G257600 Glycine max HOM05D007750 ORTHO05D009803 5.9e-24 116.7 201 38.3
ClCG09G016230 Citrullus lanatus HOM05D007750 ORTHO05D009803 4.2e-22 110.5 141 43.3
Nitab4.5_0007891g0010 Nicotiana tabacum HOM05D007750 ORTHO05D009803 2.8e-18 97.8 85 51.8
CsaV3_7G007090 Cucumis sativus L. HOM05D007750 ORTHO05D009803 1.1e-17 95.9 135 42.2
Nitab4.5_0001714g0210 Nicotiana tabacum HOM05D007750 ORTHO05D009803 1.1e-17 95.9 85 50.6
EL10Ac5g12003 Beta vulgaris HOM05D007750 ORTHO05D009803 1.8e-17 95.1 85 50.6
Oeu012315.1 Olea europaea HOM05D007750 ORTHO05D009803 3.5e-16 90.9 85 47.1
Eucgr.H02967 Eucalyptus grandis HOM05D007750 ORTHO05D009803 4.2e-14 84.0 86 43.0
Hma1.2p1_0418F.1_g149220 Hydrangea macrophylla HOM05D007750 ORTHO05D009803 5.5e-14 83.6 56 66.1
PGSC0003DMG400014245 Solanum tuberosum HOM05D005764 ORTHO05D006600 4.0e-12 77.4 166 30.1
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 6.8e-12 76.6 169 29.0
Nitab4.5_0000663g0160 Nicotiana tabacum HOM05D005764 ORTHO05D006600 2.0e-11 75.1 165 29.7
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 1.7e-10 72.0 160 33.1
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 1.7e-10 72.0 169 28.4
Hund22231 Selenicereus undatus HOM05D008657 ORTHO05D010869 2.2e-10 71.6 170 25.9
DCAR_021406 Daucus carota HOM05D005764 ORTHO05D006600 8.3e-10 69.7 167 27.5
Solyc03g118280.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 8.3e-10 69.7 166 29.5
Sopen03g037190 Solanum pennellii HOM05D005764 ORTHO05D006600 1.1e-09 69.3 166 28.9
Nitab4.5_0008892g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 1.8e-09 68.6 165 29.1
SalBow7G2732 Salvia bowleyana HOM05D005764 ORTHO05D006600 1.8e-09 68.6 167 25.7
Sc08g0000170 Simmondsia chinensis HOM05D008657 ORTHO05D010869 4.1e-09 67.4 182 24.7
Dinv18433 Davidia involucrata HOM05D005764 ORTHO05D006600 9.2e-09 66.2 173 27.2
Thecc.03G139200 Theobroma cacao HOM05D005764 ORTHO05D006600 2.0e-08 65.1 99 35.4
Ciclev10010938m.g Citrus clementina HOM05D005764 ORTHO05D006600 2.7e-08 64.7 166 23.5
Potri.001G171300 Populus trichocarpa HOM05D000891 ORTHO05D000761 3.5e-08 64.3 107 31.8
Migut.H00180 Erythranthe guttata HOM05D000891 ORTHO05D000761 7.7e-08 63.2 153 29.4
SEGI_32122 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 7.7e-08 63.2 171 24.0
Actinidia07859 Actinidia chinensis HOM05D005764 ORTHO05D006600 1.0e-07 62.8 111 27.9
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 2.9e-07 61.2 165 24.2
MBI01_g37800_MAGBIO Magnolia biondii HOM05D000891 ORTHO05D000761 3.8e-07 60.8 107 31.8
QL04p061529 Quercus lobata HOM05D005764 ORTHO05D006600 3.8e-07 60.8 164 27.4
Aa31LG7G4660 Aethionema arabicum HOM05D000424 ORTHO05D000355 5.0e-07 60.5 113 27.4
Dinv21306 Davidia involucrata HOM05D005764 ORTHO05D006600 5.0e-07 60.5 175 28.0
Potri.003G062700 Populus trichocarpa HOM05D000891 ORTHO05D000761 5.0e-07 60.5 107 30.8
CDE04G3505 Ceratophyllum demersum HOM05D000300 ORTHO05D000383 8.6e-07 59.7 120 33.3
Nitab4.5_0003410g0050 Nicotiana tabacum HOM05D000891 ORTHO05D000761 8.6e-07 59.7 115 31.3
Potri.014G050300 Populus trichocarpa HOM05D000300 ORTHO05D000383 1.1e-06 59.3 112 27.7
PGR142G0525 Punica granatum HOM05D000891 ORTHO05D000761 1.1e-06 59.3 107 34.6
Nn1g00676 Nelumbo nucifera HOM05D007551 ORTHO05D009424 1.5e-06 58.9 177 27.1
Oeu014918.1 Olea europaea HOM05D000891 ORTHO05D000761 1.5e-06 58.9 96 37.5
Rhsim08G0196300 Rhododendron simsii HOM05D005764 ORTHO05D006600 1.5e-06 58.9 148 27.7
SalBow2G1681 Salvia bowleyana HOM05D000891 ORTHO05D000761 1.5e-06 58.9 107 33.6
SalBow2G3131 Salvia bowleyana HOM05D000891 ORTHO05D000761 1.5e-06 58.9 107 33.6
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 1.9e-06 58.5 182 25.3
Lj1C797T15 Lonicera japonica HOM05D005764 ORTHO05D006600 1.9e-06 58.5 163 27.6
Lj1C797T16 Lonicera japonica HOM05D005764 ORTHO05D006600 1.9e-06 58.5 163 27.6
Atru.chr3.547 Acer truncatum HOM05D000891 ORTHO05D000761 2.5e-06 58.2 115 29.6
Manes.01G179100 Manihot esculenta HOM05D007455 ORTHO05D009431 2.5e-06 58.2 147 25.9
Lalb_Chr09g0320271 Lupinus albus HOM05D000424 ORTHO05D000355 4.3e-06 57.4 171 26.3
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 4.3e-06 57.4 134 26.1
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 5.6e-06 57.0 166 25.3
AT4G36680 Arabidopsis thaliana HOM05D000891 ORTHO05D000761 5.6e-06 57.0 111 27.0
Cpa.g.sc10.237 Carica papaya HOM05D000891 ORTHO05D000761 5.6e-06 57.0 107 33.6
Cc04_g04200 Coffea canephora HOM05D000891 ORTHO05D000761 5.6e-06 57.0 107 33.6
COL.COLO4_22110 Corchorus olitorius HOM05D000891 ORTHO05D000761 5.6e-06 57.0 108 32.4
MD17G1208400 Malus domestica HOM05D000891 ORTHO05D000761 5.6e-06 57.0 107 31.8
HPP92_020726 Vanilla planifolia HOM05D000891 ORTHO05D000761 5.6e-06 57.0 107 31.8
MSTRG.23543 Avicennia marina HOM05D000891 ORTHO05D000761 7.3e-06 56.6 107 30.8
FAN09G2418 Fragaria x ananassa HOM05D000855 ORTHO05D008530 7.3e-06 56.6 136 24.3
FAN14G2211 Fragaria x ananassa HOM05D000855 ORTHO05D008530 7.3e-06 56.6 136 24.3
SEGI_07640 Sequoiadendron giganteum HOM05D007763 ORTHO05D009537 7.3e-06 56.6 170 22.9
CANSAT01G1424 Cannabis sativa HOM05D000891 ORTHO05D000761 9.5e-06 56.2 117 29.1
Haze_08024 Corylus avellana HOM05D007551 ORTHO05D009424 9.5e-06 56.2 166 25.9
Psat6g067680 Pisum sativum HOM05D000855 ORTHO05D008530 9.5e-06 56.2 131 26.0
THA.LOC104810542 Tarenaya hassleriana HOM05D007352 ORTHO05D009389 9.5e-06 56.2 121 25.6


User provided reference genes

Program Settings