Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10028515m.g Eutrema salsugineum HOM05D005348 ORTHO05D006635 0.0e+00 1248.8 627 100.0
Carub.0006s3081 Capsella rubella HOM05D005348 ORTHO05D006635 0.0e+00 1122.8 629 87.6
AL6G46446 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 0.0e+00 1115.9 629 87.3
AL6G46320 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 0.0e+00 1112.8 629 87.6
Sp6g05730 Schrenkiella parvula HOM05D005348 ORTHO05D006635 0.0e+00 1094.3 630 87.8
CARHR254650 Cardamine hirsuta HOM05D005348 ORTHO05D006635 0.0e+00 1082.4 635 86.3
AT4G11720 Arabidopsis thaliana HOM05D005348 ORTHO05D006635 0.0e+00 1077.4 629 86.2
BraA09t38310Z Brassica rapa HOM05D005348 ORTHO05D006635 0.0e+00 1075.1 645 84.7
BolC9t56320H Brassica oleracea HOM05D005348 ORTHO05D006635 2.1e-311 1071.6 661 82.6
C09p34740 Brassica napus HOM05D005348 ORTHO05D006635 2.9e-303 1044.6 637 83.5
A09p27390 Brassica napus HOM05D005348 ORTHO05D006635 1.8e-300 1035.4 637 82.6
BcaB05g23815 Brassica carinata HOM05D005348 ORTHO05D006635 2.7e-296 1021.5 639 80.1
BcaB01g01675 Brassica carinata HOM05D005348 ORTHO05D006635 1.2e-291 1006.1 623 80.4
THA.LOC104813014 Tarenaya hassleriana HOM05D005348 ORTHO05D006635 9.2e-273 943.3 557 79.4
Aa31LG9G10660 Aethionema arabicum HOM05D005348 ORTHO05D006635 1.3e-271 939.5 632 77.1
Thecc.03G272300 Theobroma cacao HOM05D005348 ORTHO05D006635 1.9e-257 892.5 524 76.7
QL12p017446 Quercus lobata HOM05D005348 ORTHO05D006635 2.7e-256 888.6 533 75.8
Duzib068G0163 Durio zibethinus HOM05D005348 ORTHO05D006635 3.9e-255 884.8 523 77.1
Gorai.007G022400 Gossypium raimondii HOM05D005348 ORTHO05D006635 1.4e-252 876.3 537 74.3
Dinv39001 Davidia involucrata HOM05D005348 ORTHO05D006635 1.3e-250 869.8 525 76.0
Actinidia05223 Actinidia chinensis HOM05D005348 ORTHO05D006635 1.7e-250 869.4 529 75.2
PGR031G1121 Punica granatum HOM05D005348 ORTHO05D006635 3.2e-249 865.1 636 67.8
Ciclev10019148m.g Citrus clementina HOM05D005348 ORTHO05D006635 7.1e-249 864.0 554 72.6
TWI15G0275 Tripterygium wilfordii HOM05D005348 ORTHO05D006635 9.3e-249 863.6 524 75.2
CANSAT21G2165 Cannabis sativa HOM05D005348 ORTHO05D006635 8.7e-247 857.1 520 74.4
FvH4_5g28890 Fragaria vesca HOM05D005348 ORTHO05D006635 8.7e-247 857.1 526 73.8
Medtr5g010740 Medicago truncatula HOM05D005348 ORTHO05D006635 1.5e-246 856.3 528 72.9
Manes.02G025740 Manihot esculenta HOM05D005348 ORTHO05D006635 1.9e-246 855.9 557 71.8
TAR375G0646 Trochodendron aralioides HOM05D005348 ORTHO05D006635 3.3e-246 855.1 523 74.0
Lj2g0017844 Lotus japonicus HOM05D005348 ORTHO05D006635 4.3e-246 854.7 538 72.3
Phvul.002G154300 Phaseolus vulgaris HOM05D005348 ORTHO05D006635 7.4e-246 854.0 535 72.1
Sc05g0000210 Simmondsia chinensis HOM05D005348 ORTHO05D006635 7.4e-246 854.0 550 71.5
Psat2g181800 Pisum sativum HOM05D005348 ORTHO05D006635 1.6e-245 852.8 534 71.5
CSS0016729 Camellia sinensis var. sinensis HOM05D005348 ORTHO05D006635 4.8e-245 851.3 619 65.3
Prupe.5G092400 Prunus persica HOM05D005348 ORTHO05D006635 2.4e-244 849.0 523 74.0
Manes.01G066000 Manihot esculenta HOM05D005348 ORTHO05D006635 6.9e-244 847.4 526 74.7
MD04G1066100 Malus domestica HOM05D005348 ORTHO05D006635 9.0e-244 847.0 523 74.0
PSO478G3496 Papaver somniferum HOM05D005348 ORTHO05D006635 1.2e-243 846.7 558 70.6
PSO782G2170 Papaver somniferum HOM05D005348 ORTHO05D006635 1.5e-243 846.3 558 70.1
Migut.E01288 Erythranthe guttata HOM05D005348 ORTHO05D006635 2.6e-243 845.5 632 63.9
SGA_v2.0_scaffold144G35970 Striga asiatica HOM05D005348 ORTHO05D006635 1.3e-242 843.2 521 72.9
Aqoxy7G00422 Aquilegia oxysepala HOM05D005348 ORTHO05D006635 4.9e-242 841.3 528 72.3
TPR.G6715 Trifolium pratense HOM05D005348 ORTHO05D006635 4.9e-242 841.3 531 71.2
ClCG01G003080 Citrullus lanatus HOM05D005348 ORTHO05D006635 2.5e-241 839.0 584 67.1
GSVIVG01019819001 Vitis vinifera HOM05D005348 ORTHO05D006635 5.5e-241 837.8 602 66.3
Sed0022971 Sechium edule HOM05D005348 ORTHO05D006635 3.5e-240 835.1 554 70.6
CiPaw.11G140300 Carya illinoinensis HOM05D005348 ORTHO05D006635 6.7e-239 830.9 563 69.6
Eucgr.D01915 Eucalyptus grandis HOM05D005348 ORTHO05D006635 1.6e-237 826.2 520 74.2
Cc08_g14090 Coffea canephora HOM05D005348 ORTHO05D006635 9.0e-236 820.5 588 65.5
arahy.Tifrunner.gnm1.ann1.C7APUF Arachis hypogaea HOM05D005348 ORTHO05D006635 7.6e-235 817.4 523 71.1
arahy.Tifrunner.gnm1.ann1.SKE7H3 Arachis hypogaea HOM05D005348 ORTHO05D006635 7.6e-235 817.4 523 70.9
CAN.G981.21 Capsicum annuum HOM05D005348 ORTHO05D006635 2.9e-234 815.5 673 60.5
Sopen08g028770 Solanum pennellii HOM05D005348 ORTHO05D006635 1.9e-233 812.8 680 59.9
EL10Ac4g10111 Beta vulgaris HOM05D005348 ORTHO05D006635 2.5e-230 802.4 554 67.7
SHI23548 Sapria himalayana HOM05D005348 ORTHO05D006635 3.1e-228 795.4 624 61.1
RcHm_v2.0_Chr4g0410761 Rosa chinensis HOM05D005348 ORTHO05D006635 2.2e-226 789.3 535 69.5
ECA240G2378 Erigeron canadensis HOM05D005348 ORTHO05D006635 2.9e-226 788.9 535 66.2
Lalb_Chr16g0377191 Lupinus albus HOM05D005348 ORTHO05D006635 2.9e-226 788.9 538 68.0
DCAR_006756 Daucus carota HOM05D005348 ORTHO05D006635 1.9e-225 786.2 520 69.4
Ah.06g194640 Amaranthus hybridus HOM05D005348 ORTHO05D006635 7.2e-225 784.3 531 68.7
Sabra01G0082300 Salix brachista HOM05D005348 ORTHO05D006635 2.0e-222 776.2 664 57.4
Lsat_1_v5_gn_3_5380 Lactuca sativa HOM05D005348 ORTHO05D006635 3.7e-221 771.9 528 66.7
Rhsim07G0093800 Rhododendron simsii HOM05D005348 ORTHO05D006635 2.0e-219 766.1 673 57.4
FAN13G3003 Fragaria x ananassa HOM05D005348 ORTHO05D006635 8.5e-218 760.8 572 63.6
SalBow1G6288 Salvia bowleyana HOM05D005348 ORTHO05D006635 3.2e-217 758.8 573 63.7
Nn6g34225 Nelumbo nucifera HOM05D005348 ORTHO05D006635 2.3e-215 752.7 458 74.0
Potri.001G109000 Populus trichocarpa HOM05D005348 ORTHO05D006635 3.9e-215 751.9 459 73.2
MELO3C005635.2 Cucumis melo HOM05D005348 ORTHO05D006635 1.2e-211 740.3 490 69.2
Glyma.09G081600 Glycine max HOM05D005348 ORTHO05D006635 1.0e-210 737.3 457 72.2
Glyma.15G240000 Glycine max HOM05D005348 ORTHO05D006635 2.2e-210 736.1 457 71.8
Glyma.11G026100 Glycine max HOM05D005348 ORTHO05D006635 1.0e-207 727.2 457 71.3
vmacro13927 Vaccinium macrocarpon HOM05D005348 ORTHO05D006635 2.8e-205 719.2 710 54.4
AUR62006548 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.8e-204 716.5 497 67.0
FAN18G1071 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.4e-204 716.1 519 66.7
Peaxi162Scf00714g00430 Petunia axillaris HOM05D005348 ORTHO05D006635 2.5e-201 706.1 426 75.1
Haze_08938 Corylus avellana HOM05D005348 ORTHO05D006635 2.2e-197 693.0 650 55.2
Atru.chr9.1551 Acer truncatum HOM05D005348 ORTHO05D006635 2.1e-192 676.4 520 64.6
FAN18G0890 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.7e-192 676.0 553 60.9
CsaV3_5G003200 Cucumis sativus L. HOM05D005348 ORTHO05D006635 3.6e-192 675.6 466 69.1
Solyc08g080450.3 Solanum lycopersicum HOM05D005348 ORTHO05D006635 2.0e-190 669.8 489 64.8
Os05g0269500 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 2.8e-189 666.0 524 61.5
Nitab4.5_0002234g0010 Nicotiana tabacum HOM05D005348 ORTHO05D006635 4.1e-188 662.1 677 52.7
AUR62037708 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.1e-185 654.1 459 67.3
Gohir.A11G021400 Gossypium hirsutum HOM05D005348 ORTHO05D006635 1.5e-182 643.7 409 73.3
Gohir.D11G021100 Gossypium hirsutum HOM05D005348 ORTHO05D006635 1.5e-182 643.7 409 73.1
AUR62000200 Chenopodium quinoa HOM05D005348 ORTHO05D006635 6.3e-181 638.3 459 65.8
MBI04_g31975_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 3.5e-179 632.5 529 59.2
Os09g0525700 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 3.5e-179 632.5 515 60.2
RcHm_v2.0_Chr7g0199071 Rosa chinensis HOM05D005348 ORTHO05D006635 2.3e-175 619.8 535 57.2
COL.COLO4_05261 Corchorus olitorius HOM05D005348 ORTHO05D006635 9.8e-174 614.4 536 58.2
Lj8C237T7 Lonicera japonica HOM05D005348 ORTHO05D006635 1.5e-166 590.5 398 69.6
FvH4_5g01650 Fragaria vesca HOM05D005348 ORTHO05D006635 2.4e-164 583.2 447 64.2
VMungo1215G1946 Vigna mungo HOM05D005348 ORTHO05D006635 5.4e-164 582.0 337 74.8
Ca_06657_v3 Cicer arietinum L. HOM05D005348 ORTHO05D006635 4.7e-152 542.3 451 59.6
Nitab4.5_0002853g0050 Nicotiana tabacum HOM05D005348 ORTHO05D006635 2.8e-144 516.5 538 50.9
Zm00001eb103180 Zea mays HOM05D005348 ORTHO05D006635 2.7e-131 473.4 315 66.0
unitig_26.g9696 Utricularia gibba HOM05D005348 ORTHO05D006635 6.9e-127 458.8 612 43.0
Cpa.g.sc29.190 Carica papaya HOM05D005348 ORTHO05D006635 1.5e-126 457.6 274 73.7
HPP92_004952 Vanilla planifolia HOM05D005348 ORTHO05D006635 6.7e-114 415.6 525 42.9
AUR62000197 Chenopodium quinoa HOM05D005348 ORTHO05D006635 7.2e-108 395.6 315 62.2
Glyma.09G081420 Glycine max HOM05D005348 ORTHO05D006635 2.6e-94 350.5 202 75.2
ATR0757G099 Amborella trichopoda HOM05D005348 ORTHO05D006635 5.9e-86 322.8 210 69.5
Hund02678 Selenicereus undatus HOM05D005348 ORTHO05D006635 4.9e-72 276.6 177 74.0
Prupe.8G039500 Prunus persica HOM05D005348 ORTHO05D006635 1.7e-69 268.1 277 49.1
VMungo1215G1628 Vigna mungo HOM05D005348 ORTHO05D006635 1.5e-68 265.0 182 68.1
FAN04G3017 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.8e-58 231.5 177 62.1
Prupe.8G039400 Prunus persica HOM05D005348 ORTHO05D006635 2.6e-57 227.6 166 65.7
Hund02677 Selenicereus undatus HOM05D005348 ORTHO05D006635 2.4e-55 221.1 210 53.8
FAN04G2632 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.5e-52 211.8 573 28.6
Glyma.11G176306 Glycine max HOM05D005348 ORTHO05D006635 2.0e-41 174.9 91 81.3
Cre16.g674852 Chlamydomonas reinhardtii HOM05D005348 ORTHO05D006635 1.6e-38 165.2 577 26.7
Glyma.01G216933 Glycine max HOM05D005348 ORTHO05D006635 2.3e-37 161.4 115 66.1
Mapoly0066s0032 Marchantia polymorpha HOM05D005348 ORTHO05D006635 4.3e-36 157.1 427 25.8
MSTRG.13824 Avicennia marina HOM05D005348 ORTHO05D006635 5.2e-34 150.2 94 70.2
HanXRQChr02g0035411 Helianthus annuus HOM05D005348 ORTHO05D006635 1.5e-33 148.7 109 59.6
CBR_g19301 Chara braunii HOM05D005348 ORTHO05D006635 9.9e-33 146.0 527 26.0
Pp3c25_15230 Physcomitrium patens HOM05D005348 ORTHO05D006635 9.9e-33 146.0 331 30.5
Glyma.09G081380 Glycine max HOM05D005348 ORTHO05D006635 3.8e-32 144.1 206 40.3
Peaxi162Scf00714g00422 Petunia axillaris HOM05D005348 ORTHO05D006635 6.4e-32 143.3 105 62.9
Mapoly0035s0066 Marchantia polymorpha HOM05D005348 ORTHO05D006635 5.1e-29 133.7 548 25.5
MBI04_g31964_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 3.6e-27 127.5 111 56.8
ATR0757G119 Amborella trichopoda HOM05D005348 ORTHO05D006635 2.0e-25 121.7 78 64.1
Glyma.11G026250 Glycine max HOM05D005348 ORTHO05D006635 1.4e-23 115.5 75 70.7
FAN08G2219 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.1e-22 111.7 79 65.8
Lj8A237G27 Lonicera japonica HOM05D005348 ORTHO05D006635 5.6e-20 103.6 57 80.7
FAN08G1421 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.4e-18 99.0 57 77.2
PGSC0003DMG400003049 Solanum tuberosum HOM05D005348 ORTHO05D006635 3.4e-17 94.4 173 41.0
arahy.Tifrunner.gnm1.ann1.AXGL4F Arachis hypogaea HOM05D005348 ORTHO05D006635 1.7e-16 92.0 59 69.5
CsaV3_6G021380 Cucumis sativus L. HOM05D005348 ORTHO05D006635 2.2e-16 91.7 132 37.1
FvH4_5g01630 Fragaria vesca HOM05D005348 ORTHO05D006635 7.4e-12 76.6 59 61.0
Gohir.D11G021150 Gossypium hirsutum HOM05D005348 ORTHO05D006635 2.8e-11 74.7 70 50.0
FAN08G1570 Fragaria x ananassa HOM05D005348 ORTHO05D006635 4.8e-11 73.9 111 41.4
C06p31100 Brassica napus HOM05D005348 ORTHO05D006635 5.5e-07 60.5 53 58.5


User provided reference genes

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