Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10028394m.g Eutrema salsugineum HOM05D003611 ORTHO05D004281 0.0e+00 1871.7 952 100.0
Sp6g00840 Schrenkiella parvula HOM05D003611 ORTHO05D004281 0.0e+00 1525.0 976 82.2
Carub.0006s3636 Capsella rubella HOM05D003611 ORTHO05D004281 0.0e+00 1506.5 985 79.2
AL6G52100 Arabidopsis lyrata HOM05D003611 ORTHO05D004281 0.0e+00 1500.0 984 79.7
CARHR249020 Cardamine hirsuta HOM05D003611 ORTHO05D004281 0.0e+00 1434.9 958 78.8
AT4G01290 Arabidopsis thaliana HOM05D003611 ORTHO05D004281 0.0e+00 1427.9 993 75.9
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 0.0e+00 1406.7 965 78.4
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 0.0e+00 1386.3 972 77.2
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 0.0e+00 1386.3 972 77.2
BcaC04g24140 Brassica carinata HOM05D003611 ORTHO05D004281 0.0e+00 1383.2 972 77.1
BcaB01g02283 Brassica carinata HOM05D003611 ORTHO05D004281 0.0e+00 1360.5 959 76.7
BcaC01g06854 Brassica carinata HOM05D003611 ORTHO05D004281 0.0e+00 1352.8 987 75.9
C03p38980 Brassica napus HOM05D003611 ORTHO05D004281 0.0e+00 1342.0 987 75.6
BolC3t16170H Brassica oleracea HOM05D003611 ORTHO05D004281 0.0e+00 1341.3 987 75.3
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 0.0e+00 1330.5 974 75.2
A03p31960 Brassica napus HOM05D003611 ORTHO05D004281 0.0e+00 1297.7 984 73.4
BraA03t12368Z Brassica rapa HOM05D003611 ORTHO05D004281 0.0e+00 1294.6 984 73.2
BcaB05g23959 Brassica carinata HOM05D003611 ORTHO05D004281 0.0e+00 1223.8 965 73.4
BcaB01g02151 Brassica carinata HOM05D003611 ORTHO05D004281 0.0e+00 1212.6 987 70.7
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 0.0e+00 1147.1 984 65.5
Aa31LG5G730 Aethionema arabicum HOM05D003611 ORTHO05D004281 0.0e+00 1133.6 1072 62.1
THA.LOC104801395 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 2.9e-286 988.8 1039 57.1
THA.LOC104825859 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 2.8e-281 972.2 1020 57.5
THA.LOC104817035 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 7.7e-247 857.8 1010 53.5
Cpa.g.sc184.26 Carica papaya HOM05D003611 ORTHO05D004281 3.9e-174 616.3 1137 40.5
QL04p055101 Quercus lobata HOM05D003611 ORTHO05D004281 4.6e-167 592.8 1126 40.7
Cfa003881 Carpinus fangiana HOM05D003611 ORTHO05D004281 4.3e-165 586.3 1110 40.8
CiPaw.01G065700 Carya illinoinensis HOM05D003611 ORTHO05D004281 1.8e-163 580.9 1117 40.6
Thecc.01G353800 Theobroma cacao HOM05D003611 ORTHO05D004281 1.0e-161 575.1 1109 40.3
Haze_15553 Corylus avellana HOM05D003611 ORTHO05D004281 1.1e-157 561.6 1073 40.3
Gohir.D11G096500 Gossypium hirsutum HOM05D003611 ORTHO05D004281 1.7e-156 557.8 1109 39.0
Gorai.007G102800 Gossypium raimondii HOM05D003611 ORTHO05D004281 4.1e-155 553.1 1109 38.8
COL.COLO4_12765 Corchorus olitorius HOM05D003611 ORTHO05D004281 1.7e-153 547.7 1115 39.4
Ciclev10018621m.g Citrus clementina HOM05D003611 ORTHO05D004281 4.2e-152 543.1 1101 38.8
FAN03G1353 Fragaria x ananassa HOM05D003611 ORTHO05D004281 4.2e-152 543.1 1126 38.7
FvH4_7g15120 Fragaria vesca HOM05D003611 ORTHO05D004281 7.2e-152 542.3 1127 38.8
Gohir.A11G091700 Gossypium hirsutum HOM05D003611 ORTHO05D004281 1.2e-151 541.6 1109 37.9
FAN06G4234 Fragaria x ananassa HOM05D003611 ORTHO05D004281 2.1e-151 540.8 1126 38.5
Prupe.2G176000 Prunus persica HOM05D003611 ORTHO05D004281 2.7e-151 540.4 1116 38.9
FAN06G0771 Fragaria x ananassa HOM05D003611 ORTHO05D004281 5.2e-150 536.2 1128 38.7
RcHm_v2.0_Chr1g0357311 Rosa chinensis HOM05D003611 ORTHO05D004281 8.8e-150 535.4 1109 39.0
Manes.05G030300 Manihot esculenta HOM05D003611 ORTHO05D004281 5.7e-149 532.7 1103 39.5
FAN10G4104 Fragaria x ananassa HOM05D003611 ORTHO05D004281 9.7e-149 531.9 1126 38.7
FAN10G1370 Fragaria x ananassa HOM05D003611 ORTHO05D004281 2.8e-148 530.4 1126 38.5
Gohir.A11G091600 Gossypium hirsutum HOM05D003611 ORTHO05D004281 4.8e-148 529.6 1113 38.0
CiPaw.02G033900 Carya illinoinensis HOM05D003611 ORTHO05D004281 1.2e-146 525.0 1086 39.4
FAN01G0094 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.2e-146 525.0 1133 38.4
Gohir.D11G096300 Gossypium hirsutum HOM05D003611 ORTHO05D004281 3.8e-145 520.0 1109 38.1
Dinv43856 Davidia involucrata HOM05D003611 ORTHO05D004281 9.4e-144 515.4 1108 38.4
Gorai.007G102600 Gossypium raimondii HOM05D003611 ORTHO05D004281 8.0e-143 512.3 1130 37.7
Duzib133G0517 Durio zibethinus HOM05D003611 ORTHO05D004281 1.8e-142 511.1 1112 37.7
Potri.002G163000 Populus trichocarpa HOM05D003611 ORTHO05D004281 1.2e-141 508.4 1109 37.8
Potri.014G089200 Populus trichocarpa HOM05D003611 ORTHO05D004281 8.3e-140 502.3 1093 38.2
Sabra02G0147500 Salix brachista HOM05D003611 ORTHO05D004281 1.4e-139 501.5 1105 37.6
Sabra14G0064800 Salix brachista HOM05D003611 ORTHO05D004281 3.1e-139 500.4 1107 37.8
MD07G1132600 Malus domestica HOM05D003611 ORTHO05D004281 7.0e-139 499.2 1059 38.9
Atru.chr5.552 Acer truncatum HOM05D003611 ORTHO05D004281 1.7e-137 494.6 1096 39.1
VMungo1383G2804 Vigna mungo HOM05D003611 ORTHO05D004281 2.1e-135 487.6 1091 37.5
Glyma.18G237600 Glycine max HOM05D003611 ORTHO05D004281 6.1e-135 486.1 1101 38.3
PGR042G1491 Punica granatum HOM05D003611 ORTHO05D004281 3.0e-134 483.8 1083 37.5
MD01G1069900 Malus domestica HOM05D003611 ORTHO05D004281 5.7e-133 479.6 1115 37.9
TWI14G0836 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 1.8e-131 474.6 1084 36.9
Manes.01G253100 Manihot esculenta HOM05D003611 ORTHO05D004281 2.7e-130 470.7 1056 37.0
Duzib138G0252 Durio zibethinus HOM05D003611 ORTHO05D004281 7.7e-130 469.2 1024 37.5
Glyma.09G255400 Glycine max HOM05D003611 ORTHO05D004281 1.3e-129 468.4 1106 37.3
Eucgr.E00101 Eucalyptus grandis HOM05D003611 ORTHO05D004281 9.5e-128 462.2 1084 35.3
arahy.Tifrunner.gnm1.ann1.I9FVBP Arachis hypogaea HOM05D003611 ORTHO05D004281 1.6e-127 461.5 1075 37.6
Nn1g01656 Nelumbo nucifera HOM05D003611 ORTHO05D004281 4.7e-127 459.9 1145 34.8
TWI59G0398 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 4.7e-127 459.9 1074 36.0
GSVIVG01026955001 Vitis vinifera HOM05D003611 ORTHO05D004281 2.0e-125 454.5 1006 37.4
Ca_00818_v3 Cicer arietinum L. HOM05D003611 ORTHO05D004281 1.7e-124 451.4 1103 35.7
Lj7A508G38 Lonicera japonica HOM05D003611 ORTHO05D004281 1.7e-124 451.4 1085 36.5
DCAR_006945 Daucus carota HOM05D003611 ORTHO05D004281 3.7e-124 450.3 1095 36.1
Medtr7g078820 Medicago truncatula HOM05D003611 ORTHO05D004281 3.2e-123 447.2 1097 35.7
Lj1g0014988 Lotus japonicus HOM05D003611 ORTHO05D004281 4.1e-123 446.8 1095 35.8
Lalb_Chr17g0339111 Lupinus albus HOM05D003611 ORTHO05D004281 4.1e-123 446.8 1051 35.8
Cc02_g38450 Coffea canephora HOM05D003611 ORTHO05D004281 7.0e-123 446.0 1086 35.6
Phvul.008G059100 Phaseolus vulgaris HOM05D003611 ORTHO05D004281 7.0e-123 446.0 1038 38.2
Dinv32512 Davidia involucrata HOM05D003611 ORTHO05D004281 2.0e-122 444.5 975 36.6
TAR375G0370 Trochodendron aralioides HOM05D003611 ORTHO05D004281 2.0e-122 444.5 1055 36.4
MELO3C006087.2 Cucumis melo HOM05D003611 ORTHO05D004281 1.5e-120 438.3 1081 35.6
CSS0009973 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 3.3e-120 437.2 1113 35.2
AUR62022609 Chenopodium quinoa HOM05D003611 ORTHO05D004281 1.2e-119 435.3 1055 36.4
DCAR_008631 Daucus carota HOM05D003611 ORTHO05D004281 1.2e-119 435.3 1052 35.2
TWI23G0144 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 1.6e-119 434.9 1072 34.5
CSS0038908 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 3.6e-119 433.7 1102 35.3
HanXRQChr17g0562341 Helianthus annuus HOM05D003611 ORTHO05D004281 3.1e-118 430.6 1025 36.0
CsaV3_3G008680 Cucumis sativus L. HOM05D003611 ORTHO05D004281 8.9e-118 429.1 1096 34.9
Lalb_Chr10g0096711 Lupinus albus HOM05D003611 ORTHO05D004281 3.4e-117 427.2 1055 35.0
AUR62004403 Chenopodium quinoa HOM05D003611 ORTHO05D004281 2.9e-116 424.1 1056 35.8
ClCG05G001310 Citrullus lanatus HOM05D003611 ORTHO05D004281 4.9e-116 423.3 1089 34.8
Psat3g107120 Pisum sativum HOM05D003611 ORTHO05D004281 3.2e-115 420.6 1093 35.3
Sc23g0002620 Simmondsia chinensis HOM05D003611 ORTHO05D004281 3.2e-115 420.6 1052 35.4
EL10Ac1g00365 Beta vulgaris HOM05D003611 ORTHO05D004281 1.6e-114 418.3 1060 36.4
Sed0009698 Sechium edule HOM05D003611 ORTHO05D004281 5.0e-113 413.3 1083 34.4
arahy.Tifrunner.gnm1.ann1.9C73IW Arachis hypogaea HOM05D003611 ORTHO05D004281 2.5e-112 411.0 1053 35.8
Nitab4.5_0010703g0040 Nicotiana tabacum HOM05D003611 ORTHO05D004281 5.6e-112 409.8 1050 35.1
Hund16671 Selenicereus undatus HOM05D003611 ORTHO05D004281 9.5e-112 409.1 1064 35.8
Lsat_1_v5_gn_4_35681 Lactuca sativa HOM05D003611 ORTHO05D004281 1.2e-111 408.7 1044 36.2
Peaxi162Scf00020g01228 Petunia axillaris HOM05D003611 ORTHO05D004281 1.2e-111 408.7 1092 34.9
Solyc10g012030.4 Solanum lycopersicum HOM05D003611 ORTHO05D004281 3.4e-109 400.6 1008 36.1
Oeu018963.2 Olea europaea HOM05D003611 ORTHO05D004281 5.8e-109 399.8 1114 34.6
Actinidia20152 Actinidia chinensis HOM05D003611 ORTHO05D004281 1.3e-108 398.7 1059 34.6
Rhsim07G0011300 Rhododendron simsii HOM05D003611 ORTHO05D004281 1.1e-107 395.6 1139 34.2
Sed0010511 Sechium edule HOM05D003611 ORTHO05D004281 1.9e-107 394.8 1100 32.7
Actinidia10062 Actinidia chinensis HOM05D003611 ORTHO05D004281 2.4e-107 394.4 892 37.0
Lalb_Chr04g0259241 Lupinus albus HOM05D003611 ORTHO05D004281 2.4e-107 394.4 1034 34.2
ECA234G2210 Erigeron canadensis HOM05D003611 ORTHO05D004281 3.2e-107 394.0 1041 35.6
PSO782G0890 Papaver somniferum HOM05D003611 ORTHO05D004281 5.4e-107 393.3 1112 35.5
Solyc01g095020.3 Solanum lycopersicum HOM05D003611 ORTHO05D004281 9.2e-107 392.5 1074 34.3
PSO478G2290 Papaver somniferum HOM05D003611 ORTHO05D004281 2.1e-106 391.3 1115 35.3
Sopen01g038800 Solanum pennellii HOM05D003611 ORTHO05D004281 2.7e-106 391.0 1073 34.5
Sopen10g005780 Solanum pennellii HOM05D003611 ORTHO05D004281 1.3e-105 388.7 1016 35.4
MBI11_g13553_MAGBIO Magnolia biondii HOM05D003611 ORTHO05D004281 1.2e-101 375.6 1144 34.4
MSTRG.20858 Avicennia marina HOM05D003611 ORTHO05D004281 7.6e-101 372.9 1093 33.6
Peaxi162Scf00585g00319 Petunia axillaris HOM05D003611 ORTHO05D004281 2.9e-100 370.9 1066 34.6
Hund27250 Selenicereus undatus HOM05D003611 ORTHO05D004281 8.4e-100 369.4 1060 33.3
TPR.G22300 Trifolium pratense HOM05D003611 ORTHO05D004281 4.1e-99 367.1 1094 32.8
Aqoxy7G00231 Aquilegia oxysepala HOM05D003611 ORTHO05D004281 7.1e-99 366.3 1067 32.8
Migut.B01791 Erythranthe guttata HOM05D003611 ORTHO05D004281 6.6e-97 359.8 1089 33.4
Actinidia18539 Actinidia chinensis HOM05D003611 ORTHO05D004281 1.5e-96 358.6 1098 33.6
Lalb_Chr17g0339131 Lupinus albus HOM05D003611 ORTHO05D004281 3.1e-94 350.9 1041 33.0
MSTRG.4840 Avicennia marina HOM05D003611 ORTHO05D004281 1.2e-93 349.0 1103 32.1
Nitab4.5_0000915g0210 Nicotiana tabacum HOM05D003611 ORTHO05D004281 1.2e-93 349.0 1006 32.9
vmacro13239 Vaccinium macrocarpon HOM05D003611 ORTHO05D004281 1.5e-93 348.6 1221 30.7
CANSAT56G4470 Cannabis sativa HOM05D003611 ORTHO05D004281 2.2e-92 344.7 794 36.9
Nitab4.5_0000200g0170 Nicotiana tabacum HOM05D003611 ORTHO05D004281 3.8e-84 317.4 1022 33.1
Nitab4.5_0000690g0050 Nicotiana tabacum HOM05D003611 ORTHO05D004281 6.4e-84 316.6 1036 32.9
Sc01g0003270 Simmondsia chinensis HOM05D003611 ORTHO05D004281 3.3e-80 304.3 946 33.3
CDE09G0589 Ceratophyllum demersum HOM05D003611 ORTHO05D004281 2.4e-78 298.1 1068 32.3
CDE11G0274 Ceratophyllum demersum HOM05D003611 ORTHO05D004281 3.1e-78 297.7 1058 32.7
Oeu015220.3 Olea europaea HOM05D003611 ORTHO05D004281 4.9e-76 290.4 863 32.3
SalBow3G4181 Salvia bowleyana HOM05D003611 ORTHO05D004281 1.8e-73 282.0 536 38.6
SGA_v2.0_scaffold4G02289 Striga asiatica HOM05D003611 ORTHO05D004281 3.2e-67 261.2 539 38.0
Zm00001eb374330 Zea mays HOM05D003611 ORTHO05D004281 7.1e-67 260.0 1022 31.5
Os06g0105900 Oryza sativa ssp. japonica HOM05D003611 ORTHO05D004281 9.0e-62 243.0 1063 29.0
ATR0661G469 Amborella trichopoda HOM05D003611 ORTHO05D004281 1.0e-60 239.6 1016 29.6
Ah.05g180220 Amaranthus hybridus HOM05D003611 ORTHO05D004281 2.7e-58 231.5 479 38.8
unitig_8.g3336 Utricularia gibba HOM05D003611 ORTHO05D004281 4.5e-53 214.2 981 29.7
Hma1.2p1_0627F.1_g191700 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 3.8e-52 211.1 831 30.3
HPP92_002731 Vanilla planifolia HOM05D003611 ORTHO05D004281 4.6e-50 204.1 515 36.9
C02p38200 Brassica napus HOM05D003611 ORTHO05D004281 5.1e-49 200.7 553 31.3
BolC2t09835H Brassica oleracea HOM05D003611 ORTHO05D004281 5.1e-49 200.7 553 31.3
Lalb_Chr04g0259211 Lupinus albus HOM05D003611 ORTHO05D004281 3.3e-48 198.0 235 51.1
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 8.2e-47 193.4 583 33.6
Lalb_Chr04g0259231 Lupinus albus HOM05D003611 ORTHO05D004281 1.8e-41 175.6 615 31.2
Hma1.2p1_0623F.1_g191000 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 1.6e-34 152.5 191 53.9
SalBow3G3040 Salvia bowleyana HOM05D003611 ORTHO05D004281 4.4e-32 144.4 550 29.5
BcaC03g16054 Brassica carinata HOM05D003611 ORTHO05D004281 6.3e-31 140.6 211 46.4
GSVIVG01028853001 Vitis vinifera HOM05D003611 ORTHO05D004281 3.1e-30 138.3 347 33.7
BcaC03g16055 Brassica carinata HOM05D003611 ORTHO05D004281 1.0e-28 133.3 83 75.9
Cfa016292 Carpinus fangiana HOM05D003611 ORTHO05D004281 7.2e-27 127.1 338 35.2
QL09p012690 Quercus lobata HOM05D003611 ORTHO05D004281 3.0e-25 121.7 504 30.2
unitig_22.g6726 Utricularia gibba HOM05D003611 ORTHO05D004281 1.5e-24 119.4 179 42.5
Pp3c18_8750 Physcomitrium patens HOM05D025697 ORTHO05D004281 1.8e-22 112.5 909 26.3
SEGI_14695 Sequoiadendron giganteum HOM05D003611 ORTHO05D004281 1.1e-19 103.2 298 35.2
Haze_00050 Corylus avellana HOM05D003611 ORTHO05D004281 2.5e-19 102.1 212 40.1
TAR374G0905 Trochodendron aralioides HOM05D003611 ORTHO05D004281 7.2e-19 100.5 212 35.8
TAR374G1053 Trochodendron aralioides HOM05D003611 ORTHO05D004281 7.2e-19 100.5 291 33.7
Dinv35257 Davidia involucrata HOM05D003611 ORTHO05D004281 2.7e-18 98.6 976 24.2
unitig_22.g6727 Utricularia gibba HOM05D003611 ORTHO05D004281 2.8e-15 88.6 458 27.3
Thecc.03G184800 Theobroma cacao HOM05D003611 ORTHO05D011897 4.9e-15 87.8 320 31.6
Atru.chr1.351 Acer truncatum HOM05D003611 ORTHO05D004281 6.3e-15 87.4 306 31.7
Duzib205G1157 Durio zibethinus HOM05D003611 ORTHO05D011897 1.4e-14 86.3 259 31.7
Mapoly0012s0024 Marchantia polymorpha HOM05D003611 ORTHO05D021332 1.4e-14 86.3 765 25.2
TWI23G0357 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 7.7e-13 80.5 347 31.7
Gohir.A11G012500 Gossypium hirsutum HOM05D003611 ORTHO05D011897 3.8e-12 78.2 269 32.0
Duzib268G1133 Durio zibethinus HOM05D003611 ORTHO05D004281 1.1e-11 76.6 139 38.8
Gorai.007G013100 Gossypium raimondii HOM05D003611 ORTHO05D011897 1.1e-11 76.6 128 43.0
Hma1.2p1_2961F.1_g330880 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 1.9e-11 75.9 151 40.4
Pp3c19_15630 Physcomitrium patens HOM05D025697 ORTHO05D004281 9.5e-11 73.6 613 24.8
Gohir.D11G011700 Gossypium hirsutum HOM05D003611 ORTHO05D011897 1.4e-09 69.7 139 40.3
Prupe.2G301400 Prunus persica HOM05D010729 ORTHO05D011897 5.7e-08 64.3 268 29.5
ATR0661G048 Amborella trichopoda HOM05D003611 ORTHO05D004281 7.5e-08 63.9 145 36.6
Rhsim03G0191400 Rhododendron simsii HOM05D003611 ORTHO05D038142 7.5e-08 63.9 245 29.0
Ciclev10006595m.g Citrus clementina HOM05D003611 ORTHO05D004281 9.8e-08 63.5 80 48.8
Lalb_Chr04g0259221 Lupinus albus HOM05D003611 ORTHO05D004281 2.2e-07 62.4 91 46.2
Dinv32513 Davidia involucrata HOM05D003611 ORTHO05D004281 3.7e-07 61.6 82 47.6
Actinidia02823 Actinidia chinensis HOM05D003611 ORTHO05D004281 1.1e-06 60.1 241 28.6
BolC5t33940H Brassica oleracea HOM05D000459 ORTHO05D021613 1.4e-06 59.7 44 72.7
BolC5t33941H Brassica oleracea HOM05D000459 ORTHO05D021613 1.4e-06 59.7 44 72.7
SEGI_21460 Sequoiadendron giganteum HOM05D003611 ORTHO05D004281 1.8e-06 59.3 145 34.5
C02p57840 Brassica napus HOM05D000459 ORTHO05D021613 3.2e-06 58.5 44 70.5
BolC2t11163H Brassica oleracea HOM05D000459 ORTHO05D021613 4.1e-06 58.2 44 70.5


User provided reference genes

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