Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10028211m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 6.7e-37 156.8 75 100.0
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 1.8e-18 95.5 59 78.0
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 1.2e-17 92.8 59 74.6
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 5.9e-17 90.5 60 78.3
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 1.7e-16 89.0 60 78.3
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 1.7e-16 89.0 60 78.3
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 1.7e-16 89.0 59 76.3
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 2.9e-16 88.2 60 75.0
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 3.8e-16 87.8 60 76.7
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 3.8e-16 87.8 60 76.7
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 3.8e-16 87.8 60 76.7
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 8.5e-16 86.7 59 69.5
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 1.9e-15 85.5 60 73.3
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 4.7e-14 80.9 59 72.9
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 9.7e-12 73.2 65 55.4
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 1.8e-10 68.9 55 65.5
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 4.5e-09 64.3 59 57.6
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 5.9e-09 63.9 60 51.7
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 5.9e-09 63.9 58 55.2
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 5.9e-09 63.9 64 51.6
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 1.3e-08 62.8 58 53.4
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 1.7e-08 62.4 61 55.7
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 1.7e-08 62.4 77 40.3
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 1.7e-08 62.4 59 50.8
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 1.7e-08 62.4 59 50.8
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 1.7e-08 62.4 59 52.5
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 2.2e-08 62.0 59 50.8
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 2.2e-08 62.0 59 52.5
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 2.2e-08 62.0 59 52.5
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 2.9e-08 61.6 75 38.7
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 2.9e-08 61.6 59 52.5
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 3.8e-08 61.2 59 54.2
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 3.8e-08 61.2 59 50.8
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 6.5e-08 60.5 75 41.3
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 6.5e-08 60.5 59 52.5
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 8.5e-08 60.1 57 50.9
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 1.1e-07 59.7 64 45.3
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 1.1e-07 59.7 58 53.4
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 1.5e-07 59.3 64 48.4
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 1.5e-07 59.3 58 51.7
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 1.5e-07 59.3 58 56.9
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 2.5e-07 58.5 59 52.5
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 2.5e-07 58.5 64 45.3
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 3.2e-07 58.2 59 49.2
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 3.2e-07 58.2 59 49.2
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 4.2e-07 57.8 59 54.2
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 4.2e-07 57.8 57 50.9
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 5.5e-07 57.4 58 48.3
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 5.5e-07 57.4 75 36.0
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 5.5e-07 57.4 64 46.9
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 5.5e-07 57.4 58 55.2
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 5.5e-07 57.4 59 50.8
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 7.2e-07 57.0 59 45.8
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 7.2e-07 57.0 64 46.9
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 7.2e-07 57.0 58 55.2
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 7.2e-07 57.0 58 55.2
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 9.4e-07 56.6 58 51.7
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 9.4e-07 56.6 64 46.9
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 9.4e-07 56.6 57 50.9
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 9.4e-07 56.6 59 47.5
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 9.4e-07 56.6 59 49.2
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 9.4e-07 56.6 58 51.7
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 1.6e-06 55.8 58 51.7
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 1.6e-06 55.8 58 51.7
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 1.6e-06 55.8 58 46.6
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 1.6e-06 55.8 58 50.0
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 2.1e-06 55.5 58 50.0
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 2.1e-06 55.5 65 44.6
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 3.6e-06 54.7 64 40.6
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 3.6e-06 54.7 58 44.8
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 3.6e-06 54.7 59 45.8
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 4.7e-06 54.3 59 45.8
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 4.7e-06 54.3 58 48.3
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 6.1e-06 53.9 64 40.6
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 6.1e-06 53.9 58 48.3
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 8.0e-06 53.5 64 43.8
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 8.0e-06 53.5 57 45.6
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 8.0e-06 53.5 58 53.4


User provided reference genes

Program Settings