Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10028182m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 2.3e-95 352.4 181 100.0
Thhalv10027990m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.9e-25 120.2 128 53.9
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 1.7e-10 70.5 77 42.9
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 1.5e-09 67.4 74 44.6
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 1.5e-09 67.4 74 44.6
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 1.9e-09 67.0 76 43.4
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 2.5e-09 66.6 77 44.2
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 2.5e-09 66.6 77 44.2
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 3.3e-09 66.2 89 37.1
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 4.3e-09 65.9 188 28.7
Aa31sc26G130 Aethionema arabicum HOM05D008497 ORTHO05D003355 5.6e-09 65.5 65 41.5
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 5.6e-09 65.5 77 42.9
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 5.6e-09 65.5 77 42.9
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 5.6e-09 65.5 92 38.0
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.6e-08 63.9 100 36.0
AL1G63810 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 2.1e-08 63.5 84 33.3
BraA01t02635Z Brassica rapa HOM05D008497 ORTHO05D003355 2.8e-08 63.2 73 43.8
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 2.8e-08 63.2 66 39.4
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 3.6e-08 62.8 72 40.3
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 4.7e-08 62.4 92 32.6
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 4.7e-08 62.4 71 38.0
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 4.7e-08 62.4 71 38.0
Aa31LG7G9560 Aethionema arabicum HOM05D008497 ORTHO05D003355 6.2e-08 62.0 85 35.3
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 6.2e-08 62.0 86 34.9
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 6.2e-08 62.0 65 36.9
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 6.2e-08 62.0 111 35.1
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 8.1e-08 61.6 66 37.9
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 8.1e-08 61.6 88 36.4
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 8.1e-08 61.6 61 44.3
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.1e-07 61.2 155 27.7
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 1.4e-07 60.8 71 38.0
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.8e-07 60.5 118 35.6
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 1.8e-07 60.5 110 34.5
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 1.8e-07 60.5 66 34.8
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.8e-07 60.5 74 37.8
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 2.4e-07 60.1 189 29.1
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 2.4e-07 60.1 62 37.1
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 3.1e-07 59.7 93 32.3
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 5.3e-07 58.9 68 35.3
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 5.3e-07 58.9 98 29.6
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 9.0e-07 58.2 67 35.8
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 1.2e-06 57.8 95 32.6
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 1.2e-06 57.8 61 39.3
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 1.2e-06 57.8 68 38.2
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 1.5e-06 57.4 75 36.0
THA.LOC104825538 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.5e-06 57.4 67 41.8
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 2.0e-06 57.0 61 36.1
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 2.0e-06 57.0 63 38.1
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 2.0e-06 57.0 59 42.4
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.6e-06 56.6 129 30.2
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 2.6e-06 56.6 66 33.3
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 2.6e-06 56.6 66 33.3
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 2.6e-06 56.6 65 35.4
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 2.6e-06 56.6 79 34.2
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 3.4e-06 56.2 66 31.8
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 3.4e-06 56.2 65 35.4
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 3.4e-06 56.2 66 33.3
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 4.4e-06 55.8 69 33.3
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 4.4e-06 55.8 64 34.4
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 4.4e-06 55.8 69 30.4
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 5.8e-06 55.5 83 26.5
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 5.8e-06 55.5 67 34.3
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 7.6e-06 55.1 168 29.8
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 7.6e-06 55.1 74 33.8


User provided reference genes

Program Settings