Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10028177m.g Eutrema salsugineum HOM05D006489 ORTHO05D007556 1.0e-206 723.4 421 100.0
BcaB06g27045 Brassica carinata HOM05D006489 ORTHO05D007556 1.9e-128 463.4 478 59.2
BcaC02g09533 Brassica carinata HOM05D006489 ORTHO05D007556 1.8e-126 456.8 527 54.5
BolC4t25966H Brassica oleracea HOM05D006489 ORTHO05D007556 1.8e-126 456.8 527 54.5
C04p43850 Brassica napus HOM05D006489 ORTHO05D007556 2.3e-126 456.4 527 54.3
Carub.0003s2045 Capsella rubella HOM05D006489 ORTHO05D007556 1.8e-123 446.8 467 60.8
A04p10340 Brassica napus HOM05D006489 ORTHO05D007556 3.8e-121 439.1 529 53.9
Sp7g05570 Schrenkiella parvula HOM05D006489 ORTHO05D007556 2.5e-120 436.4 579 51.5
BraA04t16706Z Brassica rapa HOM05D006489 ORTHO05D007556 3.2e-120 436.0 432 61.6
CARHR096250 Cardamine hirsuta HOM05D006489 ORTHO05D007556 6.7e-118 428.3 471 59.0
AT3G20490 Arabidopsis thaliana HOM05D006489 ORTHO05D007556 2.2e-113 413.3 466 58.8
AL3G34270 Arabidopsis lyrata HOM05D006489 ORTHO05D007556 1.9e-112 410.2 462 58.9
Aa31LG8G7280 Aethionema arabicum HOM05D006489 ORTHO05D007556 6.7e-102 375.2 458 53.9
THA.LOC104817868 Tarenaya hassleriana HOM05D006489 ORTHO05D007556 1.4e-78 297.7 468 45.7
TWI15G0832 Tripterygium wilfordii HOM05D006489 ORTHO05D007556 7.1e-51 205.7 488 37.5
Cpa.g.sc97.9 Carica papaya HOM05D006489 ORTHO05D007556 3.5e-50 203.4 467 36.4
Ciclev10008166m.g Citrus clementina HOM05D006489 ORTHO05D007556 8.6e-49 198.7 476 35.9
Sabra11G0125100 Salix brachista HOM05D006489 ORTHO05D007556 2.9e-44 183.7 490 34.9
QL08p010454 Quercus lobata HOM05D006489 ORTHO05D007556 6.4e-44 182.6 509 34.8
HanXRQChr08g0220561 Helianthus annuus HOM05D006489 ORTHO05D007556 1.6e-42 177.9 453 34.2
TAR627G0165 Trochodendron aralioides HOM05D006489 ORTHO05D007556 1.6e-42 177.9 482 34.6
Gorai.004G027700 Gossypium raimondii HOM05D006489 ORTHO05D007556 4.6e-42 176.4 471 34.6
Gohir.D08G030200 Gossypium hirsutum HOM05D006489 ORTHO05D007556 6.6e-41 172.6 470 34.9
COL.COLO4_19762 Corchorus olitorius HOM05D006489 ORTHO05D007556 1.1e-40 171.8 396 37.1
Duzib213G0414 Durio zibethinus HOM05D006489 ORTHO05D007556 1.1e-40 171.8 472 35.0
Peaxi162Scf00964g00023 Petunia axillaris HOM05D006489 ORTHO05D007556 5.6e-40 169.5 454 33.0
HanXRQChr03g0076541 Helianthus annuus HOM05D006489 ORTHO05D007556 2.8e-39 167.2 456 33.1
Potri.011G139200 Populus trichocarpa HOM05D006489 ORTHO05D007556 1.1e-38 165.2 490 33.5
Actinidia35341 Actinidia chinensis HOM05D006489 ORTHO05D007556 1.8e-38 164.5 478 31.8
Dinv22265 Davidia involucrata HOM05D006489 ORTHO05D007556 1.5e-37 161.4 486 32.7
ECA240G0124 Erigeron canadensis HOM05D006489 ORTHO05D007556 1.5e-37 161.4 488 31.6
CSS0036232 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 2.0e-37 161.0 412 36.4
CSS0017234 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 2.6e-37 160.6 415 37.6
CiPaw.12G129400 Carya illinoinensis HOM05D006489 ORTHO05D007556 1.7e-36 157.9 530 31.3
Prupe.4G212300 Prunus persica HOM05D006489 ORTHO05D007556 3.8e-36 156.8 529 30.6
vmacro09717 Vaccinium macrocarpon HOM05D006489 ORTHO05D007556 6.4e-36 156.0 459 32.7
Hma1.2p1_1162F.1_g262610 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 8.4e-36 155.6 475 35.2
Gohir.A08G019600 Gossypium hirsutum HOM05D006489 ORTHO05D007556 1.9e-35 154.5 464 33.4
Haze_09673 Corylus avellana HOM05D006489 ORTHO05D007556 3.2e-35 153.7 531 29.9
Lsat_1_v5_gn_9_94040 Lactuca sativa HOM05D006489 ORTHO05D007556 1.6e-34 151.4 463 32.6
Ca_06317_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 2.1e-34 151.0 513 31.0
PGSC0003DMG400022321 Solanum tuberosum HOM05D006489 ORTHO05D007556 2.3e-33 147.5 466 32.2
ATR0752G219 Amborella trichopoda HOM05D006489 ORTHO05D007556 3.9e-33 146.7 445 32.8
Aqoxy1G03602 Aquilegia oxysepala HOM05D006489 ORTHO05D007556 3.9e-33 146.7 485 30.1
TPR.G1166 Trifolium pratense HOM05D006489 ORTHO05D007556 1.1e-32 145.2 497 32.4
Ca_25386_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 1.5e-32 144.8 492 31.1
RcHm_v2.0_Chr5g0039401 Rosa chinensis HOM05D006489 ORTHO05D007556 1.5e-32 144.8 380 34.7
PGR083G1541 Punica granatum HOM05D006489 ORTHO05D007556 4.3e-32 143.3 441 33.3
Sopen07g032750 Solanum pennellii HOM05D006489 ORTHO05D007556 4.3e-32 143.3 468 32.1
Cfa020351 Carpinus fangiana HOM05D006489 ORTHO05D007556 5.6e-32 142.9 552 29.3
FAN21G0022 Fragaria x ananassa HOM05D006489 ORTHO05D007556 5.6e-32 142.9 384 34.9
Manes.03G129000 Manihot esculenta HOM05D006489 ORTHO05D007556 7.3e-32 142.5 465 31.6
Solyc07g064570.3 Solanum lycopersicum HOM05D006489 ORTHO05D007556 9.6e-32 142.1 486 32.1
Hma1.2p1_1162F.1_g262600 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 1.6e-31 141.4 383 36.3
FAN25G3282 Fragaria x ananassa HOM05D006489 ORTHO05D007556 3.6e-31 140.2 419 32.9
Sed0018772 Sechium edule HOM05D006489 ORTHO05D007556 1.4e-30 138.3 524 28.6
VMungo0647G1504 Vigna mungo HOM05D006489 ORTHO05D007556 1.4e-30 138.3 553 29.7
Atru.chr2.3342 Acer truncatum HOM05D006489 ORTHO05D007556 4.0e-30 136.7 284 37.0
MBI02_g07154_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 5.3e-30 136.3 425 30.8
CAN.G337.129 Capsicum annuum HOM05D006489 ORTHO05D007556 6.9e-30 136.0 402 33.1
Nn1g03547 Nelumbo nucifera HOM05D006489 ORTHO05D007556 6.9e-30 136.0 497 30.8
Oeu062694.1 Olea europaea HOM05D006489 ORTHO05D007556 3.4e-29 133.7 460 30.9
Glyma.02G290600 Glycine max HOM05D006489 ORTHO05D007556 4.5e-29 133.3 551 28.5
LjContig00272g0011286 Lotus japonicus HOM05D006489 ORTHO05D007556 5.8e-29 132.9 517 28.8
CANSAT11G2482 Cannabis sativa HOM05D006489 ORTHO05D007556 7.6e-29 132.5 543 31.5
FvH4_3g22630 Fragaria vesca HOM05D006489 ORTHO05D007556 9.9e-29 132.1 387 34.1
Psat2g011040 Pisum sativum HOM05D006489 ORTHO05D007556 3.8e-28 130.2 517 30.4
Cc09_g09720 Coffea canephora HOM05D006489 ORTHO05D007556 4.9e-28 129.8 473 29.4
Nitab4.5_0001913g0140 Nicotiana tabacum HOM05D006489 ORTHO05D007556 6.4e-28 129.4 425 33.4
Migut.M01768 Erythranthe guttata HOM05D006489 ORTHO05D007556 8.4e-28 129.0 457 31.5
TPR.G36685 Trifolium pratense HOM05D006489 ORTHO05D007556 1.1e-27 128.6 530 27.5
MELO3C013233.2 Cucumis melo HOM05D006489 ORTHO05D007556 1.9e-27 127.9 518 29.7
GSVIVG01037644001 Vitis vinifera HOM05D006489 ORTHO05D007556 1.9e-27 127.9 461 28.6
DCAR_022559 Daucus carota HOM05D006489 ORTHO05D007556 2.4e-27 127.5 469 28.6
MBI18_g45561_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 7.1e-27 125.9 494 29.1
Sc03g0008610 Simmondsia chinensis HOM05D006489 ORTHO05D007556 1.2e-26 125.2 361 32.4
Nitab4.5_0011175g0010 Nicotiana tabacum HOM05D006489 ORTHO05D007556 1.6e-26 124.8 434 31.8
Atru.BG.151.p Acer truncatum HOM05D006489 ORTHO05D007556 2.1e-26 124.4 334 32.3
Phvul.008G267300 Phaseolus vulgaris HOM05D006489 ORTHO05D007556 1.3e-25 121.7 546 27.5
RhsimUnG0250900 Rhododendron simsii HOM05D006489 ORTHO05D007556 1.3e-25 121.7 348 33.0
Thecc.07G037900 Theobroma cacao HOM05D006489 ORTHO05D007556 1.3e-25 121.7 371 34.2
Medtr5g092580 Medicago truncatula HOM05D006489 ORTHO05D007556 2.3e-25 120.9 591 26.4
Hund23251 Selenicereus undatus HOM05D006489 ORTHO05D007556 3.0e-25 120.6 427 30.7
CDE02G1695 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 3.9e-25 120.2 494 28.7
ClCG05G014300 Citrullus lanatus HOM05D006489 ORTHO05D007556 2.5e-24 117.5 508 27.4
Eucgr.F00766 Eucalyptus grandis HOM05D006489 ORTHO05D007556 4.3e-24 116.7 331 32.0
CsaV3_7G021220 Cucumis sativus L. HOM05D006489 ORTHO05D007556 5.6e-24 116.3 372 31.5
MD03G1201600 Malus domestica HOM05D006489 ORTHO05D007556 7.4e-24 115.9 531 28.1
arahy.Tifrunner.gnm1.ann1.I0Q6ZZ Arachis hypogaea HOM05D006489 ORTHO05D007556 9.6e-24 115.5 552 27.5
AUR62015766 Chenopodium quinoa HOM05D006489 ORTHO05D007556 1.3e-23 115.2 556 28.1
CDE05G3553 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 1.6e-23 114.8 494 27.7
SGA_v2.0_scaffold80G25948 Striga asiatica HOM05D006489 ORTHO05D007556 2.1e-23 114.4 458 28.2
HPP92_013323 Vanilla planifolia HOM05D006489 ORTHO05D007556 6.9e-22 109.4 437 27.5
Lalb_Chr17g0348451 Lupinus albus HOM05D006489 ORTHO05D007556 5.8e-21 106.3 374 29.1
Medtr6g033325 Medicago truncatula HOM05D006489 ORTHO05D007556 7.6e-21 105.9 551 26.3
EL10Ac4g07823 Beta vulgaris HOM05D006489 ORTHO05D007556 2.9e-20 104.0 529 27.6
Lalb_Chr10g0106941 Lupinus albus HOM05D006489 ORTHO05D007556 8.4e-20 102.4 363 28.9
PSO675G7358 Papaver somniferum HOM05D006489 ORTHO05D007556 8.4e-20 102.4 282 30.1
Psat1g097920 Pisum sativum HOM05D006489 ORTHO05D007556 1.9e-19 101.3 328 32.9
Glyma.14G024100 Glycine max HOM05D006489 ORTHO05D007556 5.5e-19 99.8 329 29.2
arahy.Tifrunner.gnm1.ann1.X6VDEX Arachis hypogaea HOM05D006489 ORTHO05D007556 1.6e-18 98.2 557 26.8
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 2.7e-18 97.4 420 28.3
PSO541G0970 Papaver somniferum HOM05D006489 ORTHO05D007556 1.3e-17 95.1 437 27.0
Sed0021471 Sechium edule HOM05D006489 ORTHO05D007556 1.3e-17 95.1 384 27.3
AUR62020449 Chenopodium quinoa HOM05D006489 ORTHO05D007556 3.0e-17 94.0 536 26.1
Lj1A872T56 Lonicera japonica HOM05D006489 ORTHO05D007556 3.0e-17 94.0 330 27.9
FAN16G1490 Fragaria x ananassa HOM05D006489 ORTHO05D007556 3.3e-16 90.5 284 33.8
Os04g0625100 Oryza sativa ssp. japonica HOM05D006489 ORTHO05D007556 2.1e-15 87.8 412 26.5
Zm00001eb431300 Zea mays HOM05D006489 ORTHO05D007556 6.2e-15 86.3 412 25.5
ECA236G1547 Erigeron canadensis HOM05D006489 ORTHO05D007556 4.5e-13 80.1 196 31.6
HanXRQChr11g0337701 Helianthus annuus HOM05D006489 ORTHO05D007556 1.3e-12 78.6 195 32.3
Lsat_1_v5_gn_7_108561 Lactuca sativa HOM05D006489 ORTHO05D007556 4.9e-12 76.6 200 30.5
SEGI_05401 Sequoiadendron giganteum HOM05D006489 ORTHO05D007556 1.8e-09 68.2 413 25.9


User provided reference genes

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