Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 4.9e-101 371.3 214 100.0
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 2.0e-86 322.8 230 85.2
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 2.6e-86 322.4 226 77.0
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 4.5e-86 321.6 215 81.4
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 3.8e-85 318.5 227 76.7
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 9.4e-84 313.9 216 82.4
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 1.0e-82 310.5 219 84.5
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 8.2e-72 274.2 214 80.4
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 1.2e-67 260.4 216 77.8
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 6.1e-67 258.1 129 93.8
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 8.3e-56 221.1 209 56.5
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.1e-52 210.7 218 57.8
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 1.5e-49 200.3 211 52.6
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 2.6e-49 199.5 215 67.0
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 4.9e-48 195.3 216 55.6
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 8.3e-48 194.5 220 54.1
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 4.7e-43 178.7 214 48.1
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 4.7e-43 178.7 213 46.0
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 3.0e-42 176.0 220 49.5
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 2.6e-41 172.9 218 44.0
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 3.4e-41 172.6 226 49.6
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 3.4e-41 172.6 218 46.3
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 3.4e-41 172.6 218 46.3
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 1.3e-40 170.6 217 46.1
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 1.7e-40 170.2 213 46.9
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 4.9e-40 168.7 215 47.0
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 6.4e-40 168.3 225 48.4
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 1.8e-39 166.8 222 45.0
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 1.8e-39 166.8 209 46.9
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 3.2e-39 166.0 220 46.4
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 3.2e-39 166.0 213 46.5
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 4.1e-39 165.6 218 52.3
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 4.1e-39 165.6 213 46.9
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 5.4e-39 165.2 138 59.4
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 5.4e-39 165.2 213 46.0
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 9.2e-39 164.5 219 46.6
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 2.0e-38 163.3 223 46.6
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 2.0e-38 163.3 138 58.0
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 2.7e-38 162.9 137 57.7
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 4.6e-38 162.2 128 60.9
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 5.9e-38 161.8 223 43.9
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 3.0e-37 159.5 212 42.9
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 5.0e-37 158.7 128 61.7
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 5.0e-37 158.7 217 44.2
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 6.6e-37 158.3 211 42.7
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 2.5e-36 156.4 128 60.9
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 2.5e-36 156.4 240 40.0
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 5.6e-36 155.2 230 40.9
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 9.5e-36 154.5 215 40.9
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 9.5e-36 154.5 213 44.1
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 1.2e-35 154.1 215 43.7
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 2.3e-34 149.8 217 46.5
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 2.0e-33 146.7 137 54.0
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 2.6e-33 146.4 213 40.8
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 3.4e-33 146.0 149 53.0
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 4.4e-33 145.6 215 41.9
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 1.7e-32 143.7 228 39.9
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 1.7e-32 143.7 134 54.5
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 2.9e-32 142.9 135 48.9
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 8.3e-32 141.4 125 56.8
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 1.1e-31 141.0 212 42.0
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 2.4e-31 139.8 138 49.3
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 2.4e-31 139.8 122 55.7
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 3.2e-31 139.4 135 53.3
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 4.1e-31 139.0 138 52.2
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 7.0e-31 138.3 122 53.3
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 1.2e-30 137.5 87 73.6
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 4.6e-30 135.6 233 41.6
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 6.0e-30 135.2 135 54.8
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 1.0e-29 134.4 135 51.1
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 1.0e-29 134.4 88 69.3
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 1.3e-29 134.0 130 53.8
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 1.7e-29 133.7 129 53.5
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 3.9e-29 132.5 107 58.9
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 3.9e-29 132.5 216 43.1
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 5.0e-29 132.1 216 43.1
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.1e-28 131.0 212 43.9
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 2.5e-28 129.8 135 49.6
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.3e-28 129.4 132 54.5
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 5.6e-28 128.6 94 61.7
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 5.6e-28 128.6 123 51.2
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.6e-28 128.6 117 55.6
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 5.6e-28 128.6 210 40.0
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 5.6e-28 128.6 137 51.8
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 9.5e-28 127.9 118 55.1
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 1.2e-27 127.5 135 48.1
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 1.2e-27 127.5 86 67.4
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 1.2e-27 127.5 99 59.6
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.8e-27 126.3 132 53.0
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 3.6e-27 125.9 135 51.9
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 3.6e-27 125.9 206 38.8
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.6e-27 125.9 132 53.8
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 3.6e-27 125.9 101 55.4
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 4.7e-27 125.6 251 35.5
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 4.7e-27 125.6 251 35.5
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 4.7e-27 125.6 210 46.7
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 6.2e-27 125.2 132 53.0
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 8.1e-27 124.8 228 36.4
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 3.1e-26 122.9 113 54.0
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.0e-26 122.5 135 52.6
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 4.0e-26 122.5 136 50.7
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.2e-26 122.1 135 51.9
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 5.2e-26 122.1 136 50.0
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 1.2e-25 120.9 141 45.4
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 1.5e-25 120.6 158 46.8
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.5e-25 120.6 135 51.9
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 2.0e-25 120.2 214 36.9
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 2.6e-25 119.8 137 45.3
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 5.8e-25 118.6 122 51.6
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 1.3e-24 117.5 213 37.1
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.7e-24 117.1 135 50.4
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 2.9e-24 116.3 213 36.6
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 4.9e-24 115.5 120 51.7
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 1.4e-23 114.0 137 45.3
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 1.9e-23 113.6 131 47.3
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 1.9e-23 113.6 131 47.3
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 5.4e-23 112.1 216 35.6
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 9.2e-23 111.3 127 48.0
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 1.2e-22 110.9 135 45.9
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 1.2e-22 110.9 128 53.9
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 1.2e-22 110.9 129 46.5
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 3.5e-22 109.4 222 36.5
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 6.0e-22 108.6 135 44.4
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 2.3e-21 106.7 84 57.1
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 2.3e-21 106.7 84 57.1
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 2.3e-21 106.7 84 57.1
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 2.3e-21 106.7 135 43.7
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 6.6e-21 105.1 134 44.0
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 1.5e-20 104.0 136 46.3
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 1.9e-20 103.6 136 45.6
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 5.6e-20 102.1 137 45.3
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 5.6e-20 102.1 84 56.0
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 5.6e-20 102.1 84 56.0
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 7.3e-20 101.7 137 44.5
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 7.3e-20 101.7 137 44.5
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 9.5e-20 101.3 135 44.4
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 2.1e-19 100.1 137 46.0
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 2.1e-19 100.1 137 46.0
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 3.6e-19 99.4 135 42.2
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 3.6e-19 99.4 135 42.2
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 3.6e-19 99.4 132 45.5
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 6.2e-19 98.6 139 46.8
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 1.4e-18 97.4 139 41.0
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 1.4e-18 97.4 139 41.0
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 2.3e-18 96.7 87 55.2
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 3.1e-18 96.3 137 43.1
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 3.1e-18 96.3 137 43.1
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 4.0e-18 95.9 135 43.0
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 4.4e-17 92.4 211 30.8
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.3e-16 90.9 126 42.9
Carub.0005s0566 Capsella rubella HOM05D013829 ORTHO05D015952 8.4e-16 88.2 215 36.7
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 4.1e-15 85.9 192 40.6
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 2.1e-14 83.6 122 42.6
Lsat_1_v5_gn_4_184741 Lactuca sativa HOM05D004407 ORTHO05D005074 2.1e-14 83.6 217 41.0
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 2.7e-14 83.2 108 37.0
Sp2g16550 Schrenkiella parvula HOM05D013829 ORTHO05D015952 1.7e-13 80.5 214 36.4
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 1.7e-13 80.5 84 47.6
A06p41240 Brassica napus HOM05D013829 ORTHO05D015952 2.3e-13 80.1 219 34.7
C07p36420 Brassica napus HOM05D013829 ORTHO05D015952 2.3e-13 80.1 218 33.5
BraA06t27048Z Brassica rapa HOM05D013829 ORTHO05D015952 2.3e-13 80.1 219 34.7
BcaC06g33826 Brassica carinata HOM05D013829 ORTHO05D015952 5.1e-13 79.0 215 36.7
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 6.6e-13 78.6 131 38.9
CARHR148680 Cardamine hirsuta HOM05D013829 ORTHO05D015952 1.5e-12 77.4 124 43.5
AL5G16690 Arabidopsis lyrata HOM05D013829 ORTHO05D015952 2.5e-12 76.6 214 32.7
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 2.5e-12 76.6 60 60.0
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 3.3e-12 76.3 71 50.7
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 7.3e-12 75.1 132 38.6
SEGI_17639 Sequoiadendron giganteum HOM05D050174 ORTHO05D005074 3.1e-10 69.7 109 38.5
CANSAT64G1789 Cannabis sativa HOM05D004407 ORTHO05D005074 6.9e-10 68.6 131 41.2
BolC7t44160H Brassica oleracea HOM05D013829 ORTHO05D015952 1.5e-09 67.4 221 31.7
Medtr4g061650 Medicago truncatula HOM05D004407 ORTHO05D005074 5.8e-09 65.5 53 62.3
AL4G40040 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 9.9e-09 64.7 86 40.7
BcaNung05649 Brassica carinata HOM05D013829 ORTHO05D015952 9.9e-09 64.7 120 41.7
AT3G27355 Arabidopsis thaliana HOM05D013829 ORTHO05D015952 1.7e-08 63.9 116 38.8
AT5G24640 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.7e-08 63.9 132 34.1
Nitab4.5_0000040g0600 Nicotiana tabacum HOM05D004407 ORTHO05D005074 1.9e-07 60.5 133 33.1
BcaB06g27546 Brassica carinata HOM05D002760 ORTHO05D003169 2.4e-07 60.1 28 92.9


User provided reference genes

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