Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10028129m.g Eutrema salsugineum HOM05D002474 ORTHO05D006727 6.3e-274 946.8 475 100.0
Carub.0007s3579 Capsella rubella HOM05D002474 ORTHO05D006727 1.0e-231 806.6 477 84.9
AL7G50200 Arabidopsis lyrata HOM05D002474 ORTHO05D006727 1.7e-231 805.8 478 84.7
BraA04t16928Z Brassica rapa HOM05D002474 ORTHO05D006727 1.1e-230 803.1 479 85.8
CARHR262240 Cardamine hirsuta HOM05D002474 ORTHO05D006727 1.9e-230 802.4 475 84.8
AT5G39940 Arabidopsis thaliana HOM05D002474 ORTHO05D006727 3.3e-230 801.6 480 85.6
Aa31LG9G1670 Aethionema arabicum HOM05D002474 ORTHO05D006727 5.3e-220 767.7 476 80.5
C04p46420 Brassica napus HOM05D002474 ORTHO05D006727 5.5e-201 704.5 425 84.5
A04p12710 Brassica napus HOM05D002474 ORTHO05D006727 1.1e-196 690.3 425 83.3
THA.LOC104805441 Tarenaya hassleriana HOM05D002474 ORTHO05D006727 5.9e-195 684.5 472 72.5
BcaB06g27397 Brassica carinata HOM05D002474 ORTHO05D006727 5.7e-190 667.9 402 84.8
Nn4g23008 Nelumbo nucifera HOM05D002474 ORTHO05D006727 6.5e-170 601.3 452 67.0
Atru.chr8.2476 Acer truncatum HOM05D002474 ORTHO05D006727 2.1e-168 596.3 452 67.3
HanXRQChr17g0547501 Helianthus annuus HOM05D002474 ORTHO05D006727 4.0e-167 592.0 451 66.1
Thecc.09G254500 Theobroma cacao HOM05D002474 ORTHO05D006727 1.5e-166 590.1 450 65.1
Gorai.013G255100 Gossypium raimondii HOM05D002474 ORTHO05D006727 1.3e-165 587.0 425 68.2
QL02p080225 Quercus lobata HOM05D002474 ORTHO05D006727 1.7e-165 586.6 444 66.0
Eucgr.J02138 Eucalyptus grandis HOM05D002474 ORTHO05D006727 2.4e-164 582.8 421 68.4
Gohir.A13G220300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 1.2e-163 580.5 425 67.5
MELO3C021965.2 Cucumis melo HOM05D002474 ORTHO05D006727 2.0e-163 579.7 430 68.6
ECA246G0556 Erigeron canadensis HOM05D002474 ORTHO05D006727 2.0e-163 579.7 446 65.0
CsaV3_5G037800 Cucumis sativus L. HOM05D002474 ORTHO05D006727 1.0e-162 577.4 421 69.4
Ciclev10011620m.g Citrus clementina HOM05D002474 ORTHO05D006727 2.9e-162 575.9 414 70.5
Solyc02g067480.3 Solanum lycopersicum HOM05D002474 ORTHO05D006727 2.9e-162 575.9 444 65.3
Lsat_1_v5_gn_3_102300 Lactuca sativa HOM05D002474 ORTHO05D006727 1.5e-161 573.5 450 64.7
Sopen02g016630 Solanum pennellii HOM05D002474 ORTHO05D006727 1.9e-161 573.2 444 64.6
CSS0021046 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 5.5e-161 571.6 411 69.6
FvH4_6g49390 Fragaria vesca HOM05D002474 ORTHO05D006727 1.2e-160 570.5 453 62.7
PGSC0003DMG400006940 Solanum tuberosum HOM05D002474 ORTHO05D006727 1.6e-160 570.1 444 64.6
Sc11g0006920 Simmondsia chinensis HOM05D002474 ORTHO05D006727 2.1e-160 569.7 425 65.9
Hma1.2p1_0449F.1_g154950 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 2.7e-160 569.3 421 67.2
Phvul.004G025500 Phaseolus vulgaris HOM05D002474 ORTHO05D006727 3.6e-160 568.9 446 63.7
Migut.K01338 Erythranthe guttata HOM05D002474 ORTHO05D006727 1.0e-159 567.4 445 64.3
Potri.004G130000 Populus trichocarpa HOM05D002474 ORTHO05D006727 2.3e-159 566.2 448 64.3
CAN.G1128.5 Capsicum annuum HOM05D002474 ORTHO05D006727 5.2e-159 565.1 444 63.5
TPR.G4252 Trifolium pratense HOM05D002474 ORTHO05D006727 8.8e-159 564.3 422 64.5
RcHm_v2.0_Chr2g0169251 Rosa chinensis HOM05D002474 ORTHO05D006727 1.5e-158 563.5 442 63.1
Nitab4.5_0006062g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 3.4e-158 562.4 448 63.4
Psat1g077640 Pisum sativum HOM05D002474 ORTHO05D006727 7.5e-158 561.2 427 63.7
GSVIVG01032597001 Vitis vinifera HOM05D002474 ORTHO05D006727 7.5e-158 561.2 418 66.7
Zm00001eb033100 Zea mays HOM05D002474 ORTHO05D006727 9.8e-158 560.8 502 58.6
Medtr6g011270 Medicago truncatula HOM05D002474 ORTHO05D006727 1.3e-157 560.5 422 64.2
PSO478G4089 Papaver somniferum HOM05D002474 ORTHO05D006727 2.4e-156 556.2 416 67.1
Aqoxy3G00804 Aquilegia oxysepala HOM05D002474 ORTHO05D006727 4.1e-156 555.4 413 66.3
Gohir.D13G224300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 4.1e-156 555.4 434 65.2
Nitab4.5_0002699g0040 Nicotiana tabacum HOM05D002474 ORTHO05D006727 9.1e-156 554.3 440 63.4
CiPaw.04G020500 Carya illinoinensis HOM05D002474 ORTHO05D006727 2.0e-155 553.1 448 64.3
Ca_04259_v3 Cicer arietinum L. HOM05D002474 ORTHO05D006727 2.9e-154 549.3 413 63.7
arahy.Tifrunner.gnm1.ann1.B2F8E8 Arachis hypogaea HOM05D002474 ORTHO05D006727 5.0e-154 548.5 457 60.8
Oeu033341.3 Olea europaea HOM05D002474 ORTHO05D006727 1.1e-153 547.4 477 59.7
Os12g0638800 Oryza sativa ssp. japonica HOM05D002474 ORTHO05D006727 3.2e-153 545.8 430 63.3
unitig_748.g8621 Utricularia gibba HOM05D002474 ORTHO05D006727 3.2e-153 545.8 426 62.7
CDE08G1502 Ceratophyllum demersum HOM05D002474 ORTHO05D006727 4.2e-153 545.4 432 62.7
RhsimUnG0054500 Rhododendron simsii HOM05D002474 ORTHO05D006727 7.2e-153 544.7 464 62.5
PSO161G0033 Papaver somniferum HOM05D002474 ORTHO05D006727 1.2e-152 543.9 416 66.3
Lj2g0026556 Lotus japonicus HOM05D002474 ORTHO05D006727 1.6e-152 543.5 418 63.9
Lalb_Chr06g0175531 Lupinus albus HOM05D002474 ORTHO05D006727 2.8e-152 542.7 448 59.8
Cfa007503 Carpinus fangiana HOM05D002474 ORTHO05D006727 6.8e-151 538.1 475 60.8
COL.COLO4_24935 Corchorus olitorius HOM05D002474 ORTHO05D006727 1.5e-150 537.0 415 64.8
Duzib168G1861 Durio zibethinus HOM05D002474 ORTHO05D006727 5.7e-150 535.0 384 68.5
Haze_14590 Corylus avellana HOM05D002474 ORTHO05D006727 7.5e-150 534.6 447 64.0
Cpa.g.sc14.49 Carica papaya HOM05D002474 ORTHO05D006727 1.3e-149 533.9 446 62.6
TWI60G0106 Tripterygium wilfordii HOM05D002474 ORTHO05D006727 1.1e-148 530.8 445 61.8
TAR629G1594 Trochodendron aralioides HOM05D002474 ORTHO05D006727 1.4e-148 530.4 413 65.1
CANSAT64G2711 Cannabis sativa HOM05D002474 ORTHO05D006727 2.4e-148 529.6 424 61.8
Hund13252 Selenicereus undatus HOM05D002474 ORTHO05D006727 5.4e-148 528.5 493 56.2
Nitab4.5_0023901g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 9.2e-148 527.7 403 65.3
ATR0609G116 Amborella trichopoda HOM05D002474 ORTHO05D006727 2.0e-147 526.6 410 63.4
FAN02G0112 Fragaria x ananassa HOM05D002474 ORTHO05D006727 7.8e-147 524.6 453 59.4
PGR083G0251 Punica granatum HOM05D002474 ORTHO05D006727 8.6e-146 521.2 416 63.9
Ah.12g065360 Amaranthus hybridus HOM05D002474 ORTHO05D006727 2.5e-145 519.6 421 63.4
SGA_v2.0_scaffold224G42953 Striga asiatica HOM05D002474 ORTHO05D006727 2.5e-145 519.6 437 60.6
VMungo0464G0136 Vigna mungo HOM05D002474 ORTHO05D006727 2.0e-142 510.0 484 55.4
FAN14G2185 Fragaria x ananassa HOM05D002474 ORTHO05D006727 2.9e-141 506.1 485 55.5
Sabra04G0087600 Salix brachista HOM05D002474 ORTHO05D006727 2.9e-141 506.1 494 56.7
arahy.Tifrunner.gnm1.ann1.DRNA5E Arachis hypogaea HOM05D002474 ORTHO05D006727 1.1e-140 504.2 459 57.3
Peaxi162Scf00059g00319 Petunia axillaris HOM05D002474 ORTHO05D006727 4.6e-139 498.8 425 60.7
Glyma.19G019000 Glycine max HOM05D002474 ORTHO05D006727 5.9e-139 498.4 445 58.2
AUR62031654 Chenopodium quinoa HOM05D002474 ORTHO05D006727 1.3e-138 497.3 426 59.9
EL10Ac2g02929 Beta vulgaris HOM05D002474 ORTHO05D006727 1.1e-137 494.2 424 59.0
Rhsim10G0032000 Rhododendron simsii HOM05D002474 ORTHO05D006727 2.3e-135 486.5 411 62.3
Sed0010242 Sechium edule HOM05D002474 ORTHO05D006727 4.9e-133 478.8 371 65.0
ClCG09G018440 Citrullus lanatus HOM05D002474 ORTHO05D006727 8.3e-133 478.0 568 48.8
AagrBONN_evm.TU.Sc2ySwM_369.199 Anthoceros agrestis HOM05D002474 ORTHO05D006727 3.2e-132 476.1 458 53.1
FAN05G2709 Fragaria x ananassa HOM05D002474 ORTHO05D006727 2.7e-131 473.0 442 56.8
FAN09G4837 Fragaria x ananassa HOM05D002474 ORTHO05D006727 6.0e-131 471.9 485 53.0
Pp3c23_2270 Physcomitrium patens HOM05D002474 ORTHO05D006727 1.0e-130 471.1 426 55.9
DCAR_011168 Daucus carota HOM05D002474 ORTHO05D006727 1.4e-127 460.7 353 64.9
Dinv33713 Davidia involucrata HOM05D002474 ORTHO05D006727 1.8e-127 460.3 341 67.2
CSS0037906 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 1.5e-126 457.2 341 68.0
Mapoly0035s0063 Marchantia polymorpha HOM05D002474 ORTHO05D006727 7.1e-124 448.4 414 54.1
vmacro05750 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 2.7e-115 419.9 436 53.4
AUR62018296 Chenopodium quinoa HOM05D002474 ORTHO05D006727 6.0e-115 418.7 436 53.7
HanXRQChr16g0519921 Helianthus annuus HOM05D002474 ORTHO05D006727 1.3e-114 417.5 324 65.4
SMO137G0254 Selaginella moellendorffii HOM05D002474 ORTHO05D006727 4.3e-113 412.5 467 47.1
SalBow1G0883 Salvia bowleyana HOM05D002474 ORTHO05D006727 1.1e-108 397.9 454 51.5
Prupe.3G272800 Prunus persica HOM05D002474 ORTHO05D006727 9.3e-108 394.8 341 59.5
Hma1.2p1_0449F.1_g154940 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 9.6e-105 384.8 316 61.1
HPP92_014139 Vanilla planifolia HOM05D002474 ORTHO05D006727 4.8e-104 382.5 414 48.8
BolC4t26228H Brassica oleracea HOM05D002474 ORTHO05D006727 1.7e-93 347.4 212 83.5
Manes.S095220 Manihot esculenta HOM05D002474 ORTHO05D006727 5.8e-86 322.4 275 61.1
QL02p080121 Quercus lobata HOM05D002474 ORTHO05D006727 1.8e-79 300.8 186 76.3
Cc07_g02920 Coffea canephora HOM05D002474 ORTHO05D006727 2.6e-78 297.0 255 60.8
SpUN0485_0010 Schrenkiella parvula HOM05D002474 ORTHO05D006727 8.8e-74 282.0 150 90.7
Cc07_g02930 Coffea canephora HOM05D002474 ORTHO05D006727 1.3e-72 278.1 185 70.3
QL02p080117 Quercus lobata HOM05D002474 ORTHO05D006727 5.3e-71 272.7 238 60.1
CBR_g50657 Chara braunii HOM05D002474 ORTHO05D006727 6.9e-71 272.3 299 48.2
Hund13251 Selenicereus undatus HOM05D002474 ORTHO05D006727 5.0e-61 239.6 167 68.3
Rhsim10G0031600 Rhododendron simsii HOM05D002474 ORTHO05D006727 3.6e-59 233.4 237 55.7
Sp7g01810 Schrenkiella parvula HOM05D002474 ORTHO05D006727 5.2e-58 229.6 187 66.3
Lj7A402G46 Lonicera japonica HOM05D002474 ORTHO05D006727 2.8e-48 197.2 304 43.4
C09p60950 Brassica napus HOM05D002474 ORTHO05D006727 4.2e-44 183.3 111 82.0
BolC9t56457H Brassica oleracea HOM05D002474 ORTHO05D006727 3.1e-39 167.2 103 81.6
CBR_g59258 Chara braunii HOM05D002474 ORTHO05D006727 5.4e-39 166.4 122 62.3
C09p36190 Brassica napus HOM05D002474 ORTHO05D006727 1.2e-35 155.2 96 81.2
Lj7A402G47 Lonicera japonica HOM05D002474 ORTHO05D006727 8.0e-35 152.5 96 72.9
Lsat_1_v5_gn_6_77521 Lactuca sativa HOM05D002474 ORTHO05D006727 5.2e-34 149.8 253 37.2
SEGI_13584 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 2.2e-32 144.4 150 50.0
SEGI_37465 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 7.0e-31 139.4 83 71.1
HanXRQChr09g0265421 Helianthus annuus HOM05D002474 ORTHO05D006727 1.0e-29 135.6 121 60.3
Actinidia35021 Actinidia chinensis HOM05D002474 ORTHO05D006727 1.5e-28 131.7 283 35.7
BcaC04g18910 Brassica carinata HOM05D002474 ORTHO05D006727 7.3e-28 129.4 109 65.1
MCO07G529 Micromonas commoda HOM05D002474 ORTHO05D006727 9.8e-25 119.0 479 26.9
Lsat_1_v5_gn_2_107941 Lactuca sativa HOM05D002474 ORTHO05D005260 1.9e-23 114.8 134 45.5
MBI04_g20672_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 1.5e-17 95.1 219 33.3
PRCOL_00006911 Prasinoderma coloniale HOM05D002474 ORTHO05D006727 9.8e-17 92.4 506 24.7
MBI04_g20673_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 9.2e-15 85.9 81 48.1
FAN10G3970 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.2e-14 85.5 56 71.4
FAN10G3068 Fragaria x ananassa HOM05D002474 ORTHO05D006727 8.6e-13 79.3 52 73.1
Rhsim10G0031800 Rhododendron simsii HOM05D002474 ORTHO05D006727 4.3e-12 77.0 46 71.7
Cre09.g389400 Chlamydomonas reinhardtii HOM05D002474 ORTHO05D006727 4.7e-11 73.6 128 38.3
Peaxi162Scf00036g01918 Petunia axillaris HOM05D002474 ORTHO05D006727 5.8e-09 66.6 53 54.7
Glyma.13G065601 Glycine max HOM05D002474 ORTHO05D006727 9.9e-09 65.9 49 65.3
Peaxi162Scf00781g00210 Petunia axillaris HOM05D002474 ORTHO05D006727 9.9e-09 65.9 56 51.8
vmacro05749 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 3.2e-07 60.8 31 87.1
vmacro03926 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 4.1e-07 60.5 50 62.0


User provided reference genes

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