Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10028069m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 3.5e-64 248.1 119 100.0
Thhalv10029056m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 5.6e-62 240.7 116 99.1
BolC2t10995H Brassica oleracea HOM05D003896 ORTHO05D004517 1.7e-18 96.3 80 58.8
Thhalv10001040m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 3.8e-18 95.1 43 95.3
BcaB02g06577 Brassica carinata HOM05D003896 ORTHO05D004517 2.5e-17 92.4 43 93.0
A02p31670 Brassica napus HOM05D003896 ORTHO05D004517 3.2e-17 92.0 43 90.7
C02p49010 Brassica napus HOM05D003896 ORTHO05D004517 3.2e-17 92.0 43 90.7
BraA02t08170Z Brassica rapa HOM05D003896 ORTHO05D004517 3.2e-17 92.0 43 90.7
C05p13240 Brassica napus HOM05D003896 ORTHO05D004517 4.2e-17 91.7 104 48.1
BolC5t30061H Brassica oleracea HOM05D003896 ORTHO05D004517 4.2e-17 91.7 104 48.1
C08p45150 Brassica napus HOM05D003896 ORTHO05D004517 2.1e-16 89.4 51 78.4
Sp1g13460 Schrenkiella parvula HOM05D003896 ORTHO05D004517 2.1e-16 89.4 51 78.4
TAR625G1245 Trochodendron aralioides HOM05D003896 ORTHO05D004517 3.6e-16 88.6 63 65.1
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 4.6e-16 88.2 43 90.7
A06p11120 Brassica napus HOM05D003896 ORTHO05D004517 4.6e-16 88.2 43 90.7
BolC8t52063H Brassica oleracea HOM05D003896 ORTHO05D004517 4.6e-16 88.2 51 76.5
AL1G27180 Arabidopsis lyrata HOM05D003896 ORTHO05D004517 1.0e-15 87.0 43 88.4
AT1G15120 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 1.0e-15 87.0 43 88.4
BcaB03g14560 Brassica carinata HOM05D003896 ORTHO05D004517 1.0e-15 87.0 43 88.4
BcaC05g25441 Brassica carinata HOM05D003896 ORTHO05D004517 1.0e-15 87.0 43 88.4
A09p61560 Brassica napus HOM05D003896 ORTHO05D004517 1.0e-15 87.0 43 88.4
BraA06t24292Z Brassica rapa HOM05D003896 ORTHO05D004517 1.0e-15 87.0 43 88.4
BraA09t41529Z Brassica rapa HOM05D003896 ORTHO05D004517 1.0e-15 87.0 43 88.4
Carub.0001s1488 Capsella rubella HOM05D003896 ORTHO05D004517 1.0e-15 87.0 43 88.4
CARHR015640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 1.0e-15 87.0 43 88.4
Thhalv10009667m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.4e-15 86.7 51 76.5
TAR381G0439 Trochodendron aralioides HOM05D003896 ORTHO05D004517 1.4e-15 86.7 52 78.8
Sabra05G0145900 Salix brachista HOM05D003896 ORTHO05D004517 1.8e-15 86.3 43 86.0
MD08G1223400 Malus domestica HOM05D003896 ORTHO05D004517 2.3e-15 85.9 67 61.2
AT2G01090 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 3.0e-15 85.5 46 80.4
Haze_10788 Corylus avellana HOM05D003896 ORTHO05D004517 3.0e-15 85.5 43 83.7
Actinidia38960 Actinidia chinensis HOM05D003896 ORTHO05D004517 3.9e-15 85.1 43 86.0
BcaC07g38769 Brassica carinata HOM05D003896 ORTHO05D004517 3.9e-15 85.1 43 86.0
A08p31730 Brassica napus HOM05D003896 ORTHO05D004517 3.9e-15 85.1 43 86.0
C08p17020 Brassica napus HOM05D003896 ORTHO05D004517 3.9e-15 85.1 43 86.0
BolC8t49327H Brassica oleracea HOM05D003896 ORTHO05D004517 3.9e-15 85.1 43 86.0
BraA08t35095Z Brassica rapa HOM05D003896 ORTHO05D004517 3.9e-15 85.1 43 86.0
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 3.9e-15 85.1 43 86.0
CANSAT11G1560 Cannabis sativa HOM05D003896 ORTHO05D004517 5.1e-15 84.7 43 86.0
ATR0772G203 Amborella trichopoda HOM05D003896 ORTHO05D004517 6.7e-15 84.3 43 83.7
THA.LOC109117087 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 6.7e-15 84.3 43 83.7
THA.LOC109116537 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 8.8e-15 84.0 43 86.0
Potri.002G069200 Populus trichocarpa HOM05D003896 ORTHO05D004517 1.1e-14 83.6 43 83.7
Actinidia00232 Actinidia chinensis HOM05D003896 ORTHO05D004517 2.0e-14 82.8 43 83.7
Prupe.1G560700 Prunus persica HOM05D003896 ORTHO05D004517 2.0e-14 82.8 43 86.0
PGR142G1796 Punica granatum HOM05D003896 ORTHO05D004517 2.0e-14 82.8 43 86.0
Aa31LG2G8780 Aethionema arabicum HOM05D003896 ORTHO05D004517 2.5e-14 82.4 43 83.7
CsaV3_3G018780 Cucumis sativus L. HOM05D003896 ORTHO05D004517 2.5e-14 82.4 58 67.2
Aqoxy2G00844 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 3.3e-14 82.0 41 85.4
BcaB03g13075 Brassica carinata HOM05D003896 ORTHO05D004517 3.3e-14 82.0 43 83.7
Atru.chr6.939 Acer truncatum HOM05D003896 ORTHO05D004517 4.3e-14 81.6 43 81.4
CiPaw.05G040300 Carya illinoinensis HOM05D003896 ORTHO05D004517 4.3e-14 81.6 43 83.7
Manes.18G091100 Manihot esculenta HOM05D003896 ORTHO05D004517 4.3e-14 81.6 43 81.4
Dinv19332 Davidia involucrata HOM05D003896 ORTHO05D004517 5.7e-14 81.3 77 58.4
CSS0003096 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 9.7e-14 80.5 43 81.4
CSS0009103 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 9.7e-14 80.5 43 81.4
CARHR143640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 9.7e-14 80.5 43 81.4
Medtr2g008070 Medicago truncatula HOM05D003896 ORTHO05D004517 9.7e-14 80.5 43 79.1
Manes.02G178600 Manihot esculenta HOM05D003896 ORTHO05D004517 1.3e-13 80.1 43 81.4
Nn5g28709 Nelumbo nucifera HOM05D003896 ORTHO05D004517 1.3e-13 80.1 43 81.4
Potri.002G069301 Populus trichocarpa HOM05D003896 ORTHO05D004517 1.3e-13 80.1 43 76.7
TWI23G0468 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 1.3e-13 80.1 43 81.4
Cpa.g.sc2.46 Carica papaya HOM05D003896 ORTHO05D004517 2.2e-13 79.3 43 79.1
MELO3C019495.2 Cucumis melo HOM05D003896 ORTHO05D004517 2.2e-13 79.3 43 79.1
Dinv24242 Davidia involucrata HOM05D003896 ORTHO05D004517 2.2e-13 79.3 43 81.4
Nn1g06112 Nelumbo nucifera HOM05D003896 ORTHO05D004517 2.2e-13 79.3 43 79.1
Sc02g0004100 Simmondsia chinensis HOM05D003896 ORTHO05D004517 2.2e-13 79.3 43 79.1
CDE04G2322 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 2.8e-13 79.0 43 79.1
MBI13_g20498_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 2.8e-13 79.0 43 79.1
MBI13_g29655_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 2.8e-13 79.0 43 79.1
Sed0019459 Sechium edule HOM05D003896 ORTHO05D004517 2.8e-13 79.0 43 79.1
TWI14G0008 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 2.8e-13 79.0 43 79.1
AUR62035137 Chenopodium quinoa HOM05D003896 ORTHO05D004517 3.7e-13 78.6 44 79.5
AUR62042907 Chenopodium quinoa HOM05D003896 ORTHO05D004517 3.7e-13 78.6 44 79.5
QL11p018723 Quercus lobata HOM05D003896 ORTHO05D004517 3.7e-13 78.6 43 81.4
EL10Ac1g01528 Beta vulgaris HOM05D003896 ORTHO05D004517 4.8e-13 78.2 44 77.3
FAN13G2961 Fragaria x ananassa HOM05D003896 ORTHO05D004517 4.8e-13 78.2 43 79.1
Eucgr.I02701 Eucalyptus grandis HOM05D003896 ORTHO05D004517 6.3e-13 77.8 43 79.1
FAN04G1676 Fragaria x ananassa HOM05D003896 ORTHO05D004517 6.3e-13 77.8 59 64.4
RcHm_v2.0_Chr7g0225181 Rosa chinensis HOM05D003896 ORTHO05D004517 6.3e-13 77.8 43 76.7
Thecc.02G044000 Theobroma cacao HOM05D003896 ORTHO05D004517 8.2e-13 77.4 41 82.9
arahy.Tifrunner.gnm1.ann1.D7TB4J Arachis hypogaea HOM05D003896 ORTHO05D004517 1.1e-12 77.0 43 74.4
arahy.Tifrunner.gnm1.ann1.EN81KK Arachis hypogaea HOM05D003896 ORTHO05D004517 1.1e-12 77.0 43 74.4
FvH4_5g30500 Fragaria vesca HOM05D003896 ORTHO05D004517 1.1e-12 77.0 43 79.1
FAN08G0225 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.1e-12 77.0 43 79.1
FAN18G4256 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.1e-12 77.0 43 79.1
Lj6g0000311 Lotus japonicus HOM05D003896 ORTHO05D004517 1.1e-12 77.0 43 79.1
CDE04G0116 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 1.4e-12 76.6 43 76.7
Sed0011383 Sechium edule HOM05D003896 ORTHO05D004517 1.4e-12 76.6 43 76.7
Glyma.08G181800 Glycine max HOM05D003896 ORTHO05D004517 1.8e-12 76.3 43 76.7
TAR628G1659 Trochodendron aralioides HOM05D003896 ORTHO05D004517 1.8e-12 76.3 43 76.7
Aqoxy5G02118 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 2.4e-12 75.9 43 79.1
arahy.Tifrunner.gnm1.ann1.Q4HF2T Arachis hypogaea HOM05D003896 ORTHO05D004517 2.4e-12 75.9 43 79.1
CiPaw.06G150500 Carya illinoinensis HOM05D003896 ORTHO05D004517 4.1e-12 75.1 43 76.7
Dinv05188 Davidia involucrata HOM05D003896 ORTHO05D004517 4.1e-12 75.1 43 72.1
FAN03G2302 Fragaria x ananassa HOM05D003896 ORTHO05D004517 4.1e-12 75.1 43 72.1
Glyma.15G050500 Glycine max HOM05D003896 ORTHO05D004517 4.1e-12 75.1 43 74.4
MD05G1023300 Malus domestica HOM05D003896 ORTHO05D004517 4.1e-12 75.1 43 69.8
Nitab4.5_0000078g0350 Nicotiana tabacum HOM05D003896 ORTHO05D004517 4.1e-12 75.1 43 74.4
Nitab4.5_0004027g0040 Nicotiana tabacum HOM05D003896 ORTHO05D004517 4.1e-12 75.1 43 74.4
Phvul.006G209400 Phaseolus vulgaris HOM05D003896 ORTHO05D004517 4.1e-12 75.1 43 74.4
Psat1g218920 Pisum sativum HOM05D003896 ORTHO05D004517 4.1e-12 75.1 43 72.1
TWI34G0745 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 4.1e-12 75.1 43 69.8
vmacro22914 Vaccinium macrocarpon HOM05D003896 ORTHO05D004517 4.1e-12 75.1 41 78.0
VMungo0540G0553 Vigna mungo HOM05D000025 ORTHO05D000136 4.1e-12 75.1 43 74.4
arahy.Tifrunner.gnm1.ann1.MYBE61 Arachis hypogaea HOM05D003896 ORTHO05D004517 5.3e-12 74.7 43 76.7
Os11g0162200 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 5.3e-12 74.7 43 69.8
Peaxi162Scf00067g02527 Petunia axillaris HOM05D003896 ORTHO05D004517 5.3e-12 74.7 43 76.7
FvH4_7g02900 Fragaria vesca HOM05D003896 ORTHO05D004517 6.9e-12 74.3 43 72.1
FAN06G4594 Fragaria x ananassa HOM05D003896 ORTHO05D004517 6.9e-12 74.3 43 72.1
Solyc09g074870.4 Solanum lycopersicum HOM05D003896 ORTHO05D004517 6.9e-12 74.3 43 74.4
Sopen09g029690 Solanum pennellii HOM05D003896 ORTHO05D004517 6.9e-12 74.3 43 74.4
AagrBONN_evm.TU.Sc2ySwM_228.2620 Anthoceros agrestis HOM05D003896 ORTHO05D004517 9.1e-12 73.9 43 69.8
Dinv01060 Davidia involucrata HOM05D003896 ORTHO05D004517 9.1e-12 73.9 43 74.4
Prupe.8G028000 Prunus persica HOM05D003896 ORTHO05D004517 1.2e-11 73.6 43 69.8
Atru.chr13.2169 Acer truncatum HOM05D003896 ORTHO05D004517 1.5e-11 73.2 43 65.1
FAN07G2777 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.5e-11 73.2 43 72.1
FAN17G0735 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.5e-11 73.2 43 72.1
TPR.G19749 Trifolium pratense HOM05D003896 ORTHO05D004517 1.5e-11 73.2 43 69.8
Ciclev10002923m.g Citrus clementina HOM05D003896 ORTHO05D004517 2.0e-11 72.8 43 67.4
Manes.18G073709 Manihot esculenta HOM05D003896 ORTHO05D004517 2.6e-11 72.4 43 67.4
Manes.18G090900 Manihot esculenta HOM05D003896 ORTHO05D004517 2.6e-11 72.4 43 67.4
Potri.005G190901 Populus trichocarpa HOM05D003896 ORTHO05D004517 2.6e-11 72.4 43 67.4
Gohir.D01G001100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 4.5e-11 71.6 43 72.1
Gorai.002G001600 Gossypium raimondii HOM05D003896 ORTHO05D004517 4.5e-11 71.6 43 72.1
Duzib052G0314 Durio zibethinus HOM05D003896 ORTHO05D004517 5.9e-11 71.2 43 69.8
Gohir.A12G033300 Gossypium hirsutum HOM05D003896 ORTHO05D004517 5.9e-11 71.2 43 72.1
Gohir.D12G039500 Gossypium hirsutum HOM05D003896 ORTHO05D004517 5.9e-11 71.2 43 72.1
Gorai.008G041200 Gossypium raimondii HOM05D003896 ORTHO05D004517 5.9e-11 71.2 43 72.1
Duzib248G1617 Durio zibethinus HOM05D003896 ORTHO05D004517 7.7e-11 70.9 43 72.1
Nitab4.5_0005474g0030 Nicotiana tabacum HOM05D003896 ORTHO05D004517 7.7e-11 70.9 43 67.4
Duzib132G0061 Durio zibethinus HOM05D003896 ORTHO05D004517 1.0e-10 70.5 43 72.1
Zm00001eb202390 Zea mays HOM05D003896 ORTHO05D004517 1.0e-10 70.5 43 65.1
Migut.B00649 Erythranthe guttata HOM05D003896 ORTHO05D004517 1.3e-10 70.1 43 67.4
FAN12G2386 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.3e-10 70.1 43 69.8
Lsat_1_v5_gn_7_79760 Lactuca sativa HOM05D003896 ORTHO05D004517 1.3e-10 70.1 43 67.4
Oeu012724.1 Olea europaea HOM05D003896 ORTHO05D004517 1.7e-10 69.7 43 69.8
ECA236G2466 Erigeron canadensis HOM05D003896 ORTHO05D004517 2.2e-10 69.3 43 67.4
HanXRQChr11g0337591 Helianthus annuus HOM05D003896 ORTHO05D004517 2.2e-10 69.3 43 67.4
Hma1.2p1_1800F.1_g302950 Hydrangea macrophylla HOM05D003896 ORTHO05D004517 2.2e-10 69.3 43 67.4
Mapoly0020s0072 Marchantia polymorpha HOM05D003896 ORTHO05D004517 2.2e-10 69.3 41 65.9
GSVIVG01034509001 Vitis vinifera HOM05D003896 ORTHO05D004517 2.9e-10 68.9 43 65.1
PGSC0003DMG400011391 Solanum tuberosum HOM05D003896 ORTHO05D004517 3.8e-10 68.6 43 65.1
unitig_578.g15948 Utricularia gibba HOM05D003896 ORTHO05D004517 3.8e-10 68.6 43 69.8
Pp3c19_20470 Physcomitrium patens HOM05D003896 ORTHO05D004517 5.0e-10 68.2 43 60.5
Solyc09g150155.1 Solanum lycopersicum HOM05D003896 ORTHO05D004517 6.5e-10 67.8 43 65.1
CAN.G339.36 Capsicum annuum HOM05D000541 ORTHO05D000137 8.5e-10 67.4 43 67.4
HanXRQChr11g0337581 Helianthus annuus HOM05D003896 ORTHO05D004517 8.5e-10 67.4 43 67.4
CBR_g10999 Chara braunii HOM05D003896 ORTHO05D004517 1.1e-09 67.0 43 65.1
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 1.1e-09 67.0 43 65.1
Lsat_1_v5_gn_9_116680 Lactuca sativa HOM05D003896 ORTHO05D004517 1.1e-09 67.0 43 65.1
CAN.G339.37 Capsicum annuum HOM05D003896 ORTHO05D004517 1.4e-09 66.6 43 62.8
Pp3c26_10210 Physcomitrium patens HOM05D003896 ORTHO05D004517 1.4e-09 66.6 42 66.7
Pp3c26_10390 Physcomitrium patens HOM05D003896 ORTHO05D004517 1.4e-09 66.6 42 66.7
Gohir.A01G001400 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.9e-09 66.2 43 65.1
ClCG05G009840 Citrullus lanatus HOM05D003896 ORTHO05D004517 2.5e-09 65.9 67 50.7
CBR_g10998 Chara braunii HOM05D016306 ORTHO05D018315 3.2e-09 65.5 43 60.5
SMO117G0126 Selaginella moellendorffii HOM05D003896 ORTHO05D004517 3.2e-09 65.5 46 58.7
Sc26g0002640 Simmondsia chinensis HOM05D003896 ORTHO05D004517 3.2e-09 65.5 43 65.1
C02p49050 Brassica napus HOM05D003896 ORTHO05D004517 7.2e-09 64.3 47 68.1
Migut.N01017 Erythranthe guttata HOM05D003896 ORTHO05D004517 7.2e-09 64.3 43 60.5
FAN22G1408 Fragaria x ananassa HOM05D003896 ORTHO05D004517 9.4e-09 63.9 39 71.8
SalBow6G5306 Salvia bowleyana HOM05D003896 ORTHO05D004517 9.4e-09 63.9 43 60.5
Zm00001eb139450 Zea mays HOM05D003896 ORTHO05D004517 9.4e-09 63.9 44 61.4
Nitab4.5_0013344g0010 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.0e-07 60.5 35 62.9
PSO210G7830 Papaver somniferum HOM05D003896 ORTHO05D004517 2.3e-07 59.3 41 63.4
PSO238G0030 Papaver somniferum HOM05D003896 ORTHO05D004517 2.3e-07 59.3 41 63.4
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 3.0e-07 58.9 43 58.1
PRCOL_00005271 Prasinoderma coloniale HOM05D003896 ORTHO05D004517 3.0e-07 58.9 41 56.1
Peaxi162Scf00152g01234 Petunia axillaris HOM05D003896 ORTHO05D004517 5.1e-07 58.2 72 44.4
Zm00001eb181710 Zea mays HOM05D003896 ORTHO05D004517 5.1e-07 58.2 40 65.0
Zm00001eb243140 Zea mays HOM05D003896 ORTHO05D004517 5.1e-07 58.2 40 62.5
COL.COLO4_17923 Corchorus olitorius HOM05D003896 ORTHO05D004517 2.0e-06 56.2 55 52.7
Thecc.08G150500 Theobroma cacao HOM05D003896 ORTHO05D004517 2.0e-06 56.2 43 53.5
Os02g0541700 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 5.7e-06 54.7 40 62.5
Duzib116G0919 Durio zibethinus HOM05D003896 ORTHO05D004517 9.7e-06 53.9 41 53.7


User provided reference genes

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