Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 3.2e-124 448.4 218 100.0
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 2.8e-107 392.1 218 85.8
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 8.0e-107 390.6 218 85.3
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 8.0e-107 390.6 218 85.8
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 1.0e-106 390.2 218 85.8
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 4.0e-106 388.3 218 85.3
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 4.0e-106 388.3 218 85.3
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 1.2e-105 386.7 218 84.9
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 1.5e-105 386.3 218 85.3
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 2.2e-104 382.5 209 86.6
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 2.0e-102 375.9 218 81.2
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 7.8e-102 374.0 218 80.7
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 1.0e-101 373.6 218 80.7
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 1.1e-95 353.6 209 78.5
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 1.2e-94 350.1 213 74.6
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 3.6e-91 338.6 217 71.4
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 1.2e-89 333.6 217 71.9
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 1.5e-89 333.2 216 70.8
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 7.5e-89 330.9 213 70.0
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 2.2e-88 329.3 216 69.9
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 2.9e-88 328.9 216 69.0
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 2.9e-88 328.9 216 69.0
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 1.1e-87 327.0 216 69.4
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 4.1e-87 325.1 216 68.1
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 5.4e-87 324.7 218 67.9
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 7.1e-87 324.3 218 67.9
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 2.7e-86 322.4 216 68.1
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 3.5e-86 322.0 216 69.0
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 4.6e-86 321.6 217 66.8
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 7.8e-86 320.9 216 66.7
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 7.8e-86 320.9 216 68.1
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 3.0e-85 318.9 218 66.5
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 5.1e-85 318.2 218 66.1
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 8.6e-85 317.4 218 66.1
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 8.6e-85 317.4 213 69.0
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 1.1e-84 317.0 218 66.1
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 1.1e-84 317.0 206 69.9
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 1.1e-84 317.0 217 67.3
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 3.3e-84 315.5 217 68.2
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 3.3e-84 315.5 216 67.1
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 5.6e-84 314.7 217 65.4
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 1.2e-83 313.5 217 67.7
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 6.2e-83 311.2 215 66.5
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 6.2e-83 311.2 216 67.6
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 8.1e-83 310.8 218 66.5
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 1.1e-82 310.5 216 66.7
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 1.4e-82 310.1 212 67.0
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 1.4e-82 310.1 216 66.2
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 1.8e-82 309.7 206 66.0
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 4.0e-82 308.5 216 63.9
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 5.2e-82 308.1 216 64.8
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 6.8e-82 307.8 216 68.5
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 6.8e-82 307.8 211 67.3
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 8.9e-82 307.4 208 68.3
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 1.2e-81 307.0 211 66.8
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 1.5e-81 306.6 216 68.1
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.5e-81 306.6 213 66.7
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 2.0e-81 306.2 216 66.7
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 3.4e-81 305.4 216 67.1
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 3.4e-81 305.4 213 66.7
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 3.4e-81 305.4 206 64.6
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 4.4e-81 305.1 216 63.0
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 7.6e-81 304.3 213 66.2
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 2.9e-80 302.4 211 65.9
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 2.9e-80 302.4 206 64.1
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 4.9e-80 301.6 219 65.8
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 4.9e-80 301.6 213 66.2
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 4.9e-80 301.6 213 66.2
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 4.9e-80 301.6 214 66.4
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 6.4e-80 301.2 213 65.3
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 8.4e-80 300.8 220 65.9
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 1.9e-79 299.7 214 65.9
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 2.4e-79 299.3 217 62.7
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 7.1e-79 297.7 206 64.1
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 7.1e-79 297.7 207 63.8
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.6e-78 296.6 216 63.4
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 1.6e-78 296.6 208 66.8
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 3.5e-78 295.4 216 63.9
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 4.6e-78 295.0 216 63.0
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 6.0e-78 294.7 217 64.5
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 6.0e-78 294.7 216 63.9
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 6.0e-78 294.7 218 64.7
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.3e-77 293.5 227 61.7
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 6.6e-77 291.2 208 64.4
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 1.1e-76 290.4 218 61.9
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 1.1e-76 290.4 208 64.4
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.9e-76 289.7 248 57.7
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 1.6e-75 286.6 213 64.3
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 2.1e-75 286.2 219 62.6
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 1.1e-74 283.9 207 62.8
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 2.4e-74 282.7 216 60.6
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 1.5e-73 280.0 216 60.6
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 3.4e-73 278.9 216 58.3
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 5.8e-73 278.1 213 60.6
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.3e-72 276.9 199 64.3
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.4e-71 273.5 216 59.3
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 3.2e-71 272.3 191 64.9
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 1.0e-69 267.3 213 59.6
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 3.0e-69 265.8 207 56.5
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 1.1e-68 263.8 217 55.3
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 7.3e-68 261.2 205 59.5
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 6.2e-67 258.1 207 55.1
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 5.3e-66 255.0 208 53.8
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 2.6e-65 252.7 193 60.6
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.2e-64 249.6 202 59.4
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 4.9e-64 248.4 174 64.9
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 1.2e-62 243.8 204 55.4
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 6.0e-62 241.5 170 66.5
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 1.0e-61 240.7 205 53.2
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.3e-61 240.4 194 59.8
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 3.9e-61 238.8 206 51.9
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 9.0e-58 227.6 146 69.9
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 1.2e-54 217.2 210 51.0
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 3.5e-54 215.7 144 66.7
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 6.0e-54 214.9 194 50.0
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 6.0e-54 214.9 199 52.3
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 6.7e-53 211.5 210 50.5
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 7.4e-52 208.0 144 64.6
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 1.6e-51 206.8 140 68.6
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 8.1e-51 204.5 210 49.0
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.2e-49 200.7 240 47.5
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 5.5e-47 191.8 126 69.8
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 7.1e-47 191.4 171 50.9
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 1.3e-45 187.2 208 43.8
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 8.7e-45 184.5 199 47.7
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 8.5e-40 167.9 163 50.3
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.3e-37 160.6 205 43.4
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 5.0e-32 142.1 110 58.2
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 3.6e-30 136.0 110 57.3
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 3.9e-29 132.5 211 35.1
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 8.2e-27 124.8 68 85.3
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 1.8e-26 123.6 75 70.7
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 3.2e-23 112.8 200 33.5
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 7.9e-22 108.2 218 31.7
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 1.4e-21 107.5 203 35.0
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 5.7e-20 102.1 203 30.0
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 9.7e-20 101.3 139 41.0
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 1.7e-19 100.5 77 58.4
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 4.8e-19 99.0 72 62.5
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 7.0e-18 95.1 116 44.8
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 7.0e-18 95.1 116 44.8
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 4.5e-17 92.4 116 43.1
BcaC01g05772 Brassica carinata HOM05D004605 ORTHO05D032242 1.4e-13 80.9 84 52.4
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.4e-13 80.9 56 62.5
Cre12.g553650 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D143570 2.3e-13 80.1 180 28.9
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 2.3e-13 80.1 208 27.9
BolC3t14636H Brassica oleracea HOM05D004605 ORTHO05D032242 4.0e-13 79.3 84 51.2
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 8.8e-13 78.2 55 65.5
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 5.7e-12 75.5 50 68.0
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 9.1e-10 68.2 109 37.6
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 1.6e-09 67.4 47 61.7
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 1.5e-07 60.8 40 62.5


User provided reference genes

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