Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10027896m.g Eutrema salsugineum HOM05D006599 ORTHO05D008304 5.4e-147 524.2 252 100.0
A04p11970 Brassica napus HOM05D006599 ORTHO05D008304 8.0e-135 483.8 252 90.1
C04p45620 Brassica napus HOM05D006599 ORTHO05D008304 8.0e-135 483.8 252 90.1
BolC4t26144H Brassica oleracea HOM05D006599 ORTHO05D008304 8.0e-135 483.8 252 90.1
BraA04t16862Z Brassica rapa HOM05D006599 ORTHO05D008304 8.0e-135 483.8 252 90.1
BcaC02g09687 Brassica carinata HOM05D006599 ORTHO05D008304 3.1e-134 481.9 252 89.7
Sp7g02740 Schrenkiella parvula HOM05D006599 ORTHO05D008304 1.2e-133 479.9 252 90.1
BcaB06g27283 Brassica carinata HOM05D006599 ORTHO05D008304 1.3e-132 476.5 252 88.9
AL7G51210 Arabidopsis lyrata HOM05D006599 ORTHO05D008304 1.1e-131 473.4 252 88.9
AT5G39250 Arabidopsis thaliana HOM05D006599 ORTHO05D008304 1.1e-131 473.4 253 88.9
Carub.0007s3667 Capsella rubella HOM05D006599 ORTHO05D008304 7.8e-130 467.2 252 86.9
CARHR263160 Cardamine hirsuta HOM05D006599 ORTHO05D008304 1.0e-129 466.8 252 86.1
Aa31LG9G16680 Aethionema arabicum HOM05D006599 ORTHO05D008304 6.6e-121 437.6 252 81.0
THA.LOC104823890 Tarenaya hassleriana HOM05D006599 ORTHO05D008304 1.6e-114 416.4 250 77.6
COL.COLO4_21402 Corchorus olitorius HOM05D006599 ORTHO05D008304 4.6e-106 388.3 252 71.4
Thecc.04G093300 Theobroma cacao HOM05D006599 ORTHO05D008304 1.3e-103 380.2 252 70.2
TWI34G0408 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 2.1e-103 379.4 252 68.3
Gohir.A11G072300 Gossypium hirsutum HOM05D006599 ORTHO05D008304 1.5e-101 373.2 252 69.0
Duzib147G0316 Durio zibethinus HOM05D006599 ORTHO05D008304 3.4e-101 372.1 252 68.7
CANSAT64G1926 Cannabis sativa HOM05D006599 ORTHO05D008304 4.5e-101 371.7 254 67.3
CSS0025230 Camellia sinensis var. sinensis HOM05D006599 ORTHO05D008304 5.8e-101 371.3 252 67.5
Gohir.D11G076400 Gossypium hirsutum HOM05D006599 ORTHO05D008304 5.8e-101 371.3 252 68.7
Gorai.007G082000 Gossypium raimondii HOM05D006599 ORTHO05D008304 5.8e-101 371.3 252 68.7
FvH4_6g47020 Fragaria vesca HOM05D006599 ORTHO05D008304 1.7e-100 369.8 252 66.7
FAN14G4927 Fragaria x ananassa HOM05D006599 ORTHO05D008304 1.7e-100 369.8 252 66.7
Nn3g17418 Nelumbo nucifera HOM05D006599 ORTHO05D008304 2.2e-100 369.4 248 68.1
Ca_04338_v3 Cicer arietinum L. HOM05D006599 ORTHO05D008304 2.9e-100 369.0 254 67.7
Nn4g23391 Nelumbo nucifera HOM05D006599 ORTHO05D008304 2.9e-100 369.0 252 67.1
QL02p067958 Quercus lobata HOM05D006599 ORTHO05D008304 2.9e-100 369.0 248 67.7
TWI32G0394 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 3.8e-100 368.6 249 67.5
TPR.G33427 Trifolium pratense HOM05D006599 ORTHO05D008304 4.9e-100 368.2 254 67.7
MELO3C013909.2 Cucumis melo HOM05D006599 ORTHO05D008304 6.4e-100 367.9 249 68.7
Psat3g201440 Pisum sativum HOM05D006599 ORTHO05D008304 1.4e-99 366.7 254 66.1
Atru.chr8.423 Acer truncatum HOM05D006599 ORTHO05D008304 1.9e-99 366.3 252 65.9
FAN09G1977 Fragaria x ananassa HOM05D006599 ORTHO05D008304 3.2e-99 365.5 252 65.9
ClCG07G007400 Citrullus lanatus HOM05D006599 ORTHO05D008304 5.4e-99 364.8 249 67.5
TAR629G1530 Trochodendron aralioides HOM05D006599 ORTHO05D008304 5.4e-99 364.8 246 67.1
Manes.02G054000 Manihot esculenta HOM05D006599 ORTHO05D008304 9.3e-99 364.0 252 65.9
arahy.Tifrunner.gnm1.ann1.CT2P3Y Arachis hypogaea HOM05D006599 ORTHO05D008304 1.2e-98 363.6 254 67.7
arahy.Tifrunner.gnm1.ann1.24WTBT Arachis hypogaea HOM05D006599 ORTHO05D008304 2.1e-98 362.8 254 67.3
FAN02G1129 Fragaria x ananassa HOM05D006599 ORTHO05D008304 2.1e-98 362.8 252 65.9
Potri.004G119500 Populus trichocarpa HOM05D006599 ORTHO05D008304 2.1e-98 362.8 252 66.7
Lalb_Chr17g0337021 Lupinus albus HOM05D006599 ORTHO05D008304 4.6e-98 361.7 254 67.7
Rhsim08G0074600 Rhododendron simsii HOM05D006599 ORTHO05D008304 7.9e-98 360.9 252 64.7
Cfa007654 Carpinus fangiana HOM05D006599 ORTHO05D008304 1.0e-97 360.5 252 65.5
CsaV3_3G002390 Cucumis sativus L. HOM05D006599 ORTHO05D008304 1.3e-97 360.1 249 66.3
RcHm_v2.0_Chr2g0166081 Rosa chinensis HOM05D006599 ORTHO05D008304 2.3e-97 359.4 252 65.5
Sabra04G0069000 Salix brachista HOM05D006599 ORTHO05D008304 3.0e-97 359.0 252 65.9
GSVIVG01032932001 Vitis vinifera HOM05D006599 ORTHO05D008304 3.0e-97 359.0 252 66.3
Sed0027615 Sechium edule HOM05D006599 ORTHO05D008304 6.7e-97 357.8 249 66.7
Hma1.2p1_0481F.1_g162060 Hydrangea macrophylla HOM05D006599 ORTHO05D008304 1.5e-96 356.7 253 66.4
Prupe.3G256500 Prunus persica HOM05D006599 ORTHO05D008304 1.5e-96 356.7 252 65.9
Glyma.18G265500 Glycine max HOM05D006599 ORTHO05D008304 1.9e-96 356.3 254 66.9
Lj1g0001712 Lotus japonicus HOM05D006599 ORTHO05D008304 1.9e-96 356.3 254 66.1
Medtr7g013160 Medicago truncatula HOM05D006599 ORTHO05D008304 5.6e-96 354.8 254 65.7
Nitab4.5_0000565g0260 Nicotiana tabacum HOM05D006599 ORTHO05D008304 9.6e-96 354.0 253 66.0
CiPaw.03G089500 Carya illinoinensis HOM05D006599 ORTHO05D008304 1.3e-95 353.6 252 64.7
Nitab4.5_0010051g0050 Nicotiana tabacum HOM05D006599 ORTHO05D008304 1.3e-95 353.6 253 65.6
Potri.017G092800 Populus trichocarpa HOM05D006599 ORTHO05D008304 1.6e-95 353.2 248 66.1
HanXRQChr17g0546571 Helianthus annuus HOM05D006599 ORTHO05D008304 8.1e-95 350.9 252 65.1
Gohir.D09G009200 Gossypium hirsutum HOM05D006599 ORTHO05D008304 1.4e-94 350.1 252 65.1
VMungo1383G0637 Vigna mungo HOM05D006599 ORTHO05D008304 1.4e-94 350.1 254 65.0
Gorai.006G010900 Gossypium raimondii HOM05D006599 ORTHO05D008304 2.4e-94 349.4 252 65.1
Phvul.008G034600 Phaseolus vulgaris HOM05D006599 ORTHO05D008304 3.1e-94 349.0 254 65.0
Sabra17G0081900 Salix brachista HOM05D006599 ORTHO05D008304 3.1e-94 349.0 248 64.5
Peaxi162Scf00166g00058 Petunia axillaris HOM05D006599 ORTHO05D008304 9.0e-94 347.4 253 64.4
MSTRG.23889 Avicennia marina HOM05D006599 ORTHO05D008304 1.2e-93 347.1 252 63.1
Gohir.A09G010100 Gossypium hirsutum HOM05D006599 ORTHO05D008304 2.0e-93 346.3 252 64.3
Oeu047780.1 Olea europaea HOM05D006599 ORTHO05D008304 2.0e-93 346.3 252 65.1
CAN.G206.218 Capsicum annuum HOM05D006599 ORTHO05D008304 3.4e-93 345.5 253 64.0
Sc14g0006220 Simmondsia chinensis HOM05D006599 ORTHO05D008304 3.4e-93 345.5 252 62.7
Cc07_g04100 Coffea canephora HOM05D006599 ORTHO05D008304 5.8e-93 344.7 249 64.3
PGR083G1582 Punica granatum HOM05D006599 ORTHO05D008304 1.3e-92 343.6 252 63.5
Solyc02g088730.2 Solanum lycopersicum HOM05D006599 ORTHO05D008304 1.7e-92 343.2 253 63.6
DCAR_025424 Daucus carota HOM05D006599 ORTHO05D008304 4.9e-92 341.7 252 63.5
Sopen02g033440 Solanum pennellii HOM05D006599 ORTHO05D008304 4.9e-92 341.7 253 63.2
PGSC0003DMG400001449 Solanum tuberosum HOM05D006599 ORTHO05D008304 1.1e-91 340.5 253 62.5
Migut.H00636 Erythranthe guttata HOM05D006599 ORTHO05D008304 5.5e-91 338.2 252 60.3
Aqoxy3G00501 Aquilegia oxysepala HOM05D006599 ORTHO05D008304 9.3e-91 337.4 248 62.5
MD09G1064500 Malus domestica HOM05D006599 ORTHO05D008304 1.2e-90 337.0 252 63.1
Eucgr.J01379 Eucalyptus grandis HOM05D006599 ORTHO05D008304 2.1e-90 336.3 249 61.0
Oeu035439.1 Olea europaea HOM05D006599 ORTHO05D008304 2.1e-90 336.3 252 63.9
Lsat_1_v5_gn_3_98261 Lactuca sativa HOM05D006599 ORTHO05D008304 1.0e-89 334.0 251 60.6
PSO017G0459 Papaver somniferum HOM05D006599 ORTHO05D008304 1.8e-89 333.2 252 61.9
AUR62029230 Chenopodium quinoa HOM05D006599 ORTHO05D008304 5.1e-89 331.6 247 61.9
HanXRQChr17g0551751 Helianthus annuus HOM05D006599 ORTHO05D008304 1.5e-88 330.1 252 60.7
AUR62022778 Chenopodium quinoa HOM05D006599 ORTHO05D008304 3.3e-88 328.9 247 61.1
PSO478G2235 Papaver somniferum HOM05D006599 ORTHO05D008304 3.3e-88 328.9 254 62.2
ECA232G1145 Erigeron canadensis HOM05D006599 ORTHO05D008304 1.6e-87 326.6 252 60.3
Thecc.04G093200 Theobroma cacao HOM05D006599 ORTHO05D008304 3.7e-87 325.5 252 62.7
Glyma.08G243300 Glycine max HOM05D006599 ORTHO05D008304 6.2e-87 324.7 264 61.0
Ciclev10012597m.g Citrus clementina HOM05D006599 ORTHO05D008304 8.2e-87 324.3 252 62.7
SGA_v2.0_scaffold52G19170 Striga asiatica HOM05D006599 ORTHO05D008304 3.1e-86 322.4 253 58.5
unitig_744.g23984 Utricularia gibba HOM05D006599 ORTHO05D008304 1.3e-81 307.0 252 56.7
Manes.01G097300 Manihot esculenta HOM05D006599 ORTHO05D008304 3.9e-81 305.4 230 61.3
ATR0064G081 Amborella trichopoda HOM05D006599 ORTHO05D008304 5.1e-81 305.1 248 57.7
CDE10G0620 Ceratophyllum demersum HOM05D006599 ORTHO05D008304 7.4e-80 301.2 239 56.1
Peaxi162Scf00451g00012 Petunia axillaris HOM05D006599 ORTHO05D008304 8.2e-79 297.7 241 59.8
Haze_14439 Corylus avellana HOM05D006599 ORTHO05D008304 5.0e-76 288.5 203 63.1
HPP92_009527 Vanilla planifolia HOM05D006599 ORTHO05D008304 2.1e-74 283.1 252 55.2
HPP92_009554 Vanilla planifolia HOM05D006599 ORTHO05D008304 6.1e-74 281.6 249 55.8
Os03g0423000 Oryza sativa ssp. japonica HOM05D006599 ORTHO05D008304 6.7e-73 278.1 251 52.2
Zm00001eb020180 Zea mays HOM05D006599 ORTHO05D008304 4.3e-72 275.4 252 52.0
SHI25645 Sapria himalayana HOM05D006599 ORTHO05D008304 2.4e-70 269.6 247 53.0
Pp3c13_10960 Physcomitrium patens HOM05D006599 ORTHO05D008304 9.1e-62 241.1 252 47.6
Mapoly0038s0100 Marchantia polymorpha HOM05D006599 ORTHO05D008304 7.7e-61 238.0 251 45.8
SMO347G0158 Selaginella moellendorffii HOM05D006599 ORTHO05D008304 5.5e-59 231.9 269 45.4
FAN05G2816 Fragaria x ananassa HOM05D006599 ORTHO05D008304 4.8e-55 218.8 151 61.6
Dinv34953 Davidia involucrata HOM05D006599 ORTHO05D008304 8.8e-49 198.0 136 69.1
Peaxi162Scf00451g00005 Petunia axillaris HOM05D006599 ORTHO05D008304 2.0e-48 196.8 285 42.5
Lsat_1_v5_gn_7_2780 Lactuca sativa HOM05D006599 ORTHO05D008304 5.0e-44 182.2 261 44.1
Lj4E117T1 Lonicera japonica HOM05D006599 ORTHO05D008304 1.8e-41 173.7 111 67.6
Dinv33823 Davidia involucrata HOM05D006599 ORTHO05D008304 1.4e-38 164.1 101 77.2
Lalb_Chr10g0093051 Lupinus albus HOM05D006599 ORTHO05D008304 2.6e-32 143.3 97 70.1
EL10Ac9g22551 Beta vulgaris HOM05D006599 ORTHO05D008304 7.8e-21 105.1 72 56.9
PGSC0003DMG400031200 Solanum tuberosum HOM05D006599 ORTHO05D008304 2.1e-18 97.1 89 56.2
Peaxi162Scf00270g00422 Petunia axillaris HOM05D006599 ORTHO05D008304 4.7e-18 95.9 155 39.4
Lalb_Chr10g0093041 Lupinus albus HOM05D006599 ORTHO05D008304 4.4e-16 89.4 54 63.0
MD17G1057800 Malus domestica HOM05D006599 ORTHO05D008304 6.4e-15 85.5 49 67.3
TPR.G10380 Trifolium pratense HOM05D006599 ORTHO05D008304 1.1e-14 84.7 45 82.2
Mapoly0033s0082 Marchantia polymorpha HOM05D027965 ORTHO05D048753 8.3e-07 58.5 121 33.1
Eucgr.K01581 Eucalyptus grandis HOM05D007529 ORTHO05D007451 1.1e-06 58.2 120 34.2
PGR142G2784 Punica granatum HOM05D007529 ORTHO05D007451 1.4e-06 57.8 116 33.6
Manes.09G016732 Manihot esculenta HOM05D007529 ORTHO05D007451 7.1e-06 55.5 111 33.3


User provided reference genes

Program Settings