Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10027828m.g Eutrema salsugineum HOM05D004896 ORTHO05D006447 2.9e-180 635.2 343 100.0
AL7G49080 Arabidopsis lyrata HOM05D004896 ORTHO05D006447 3.4e-160 568.5 331 89.7
Sp7g01200 Schrenkiella parvula HOM05D004896 ORTHO05D006447 2.9e-159 565.5 331 92.7
AT5G40660 Arabidopsis thaliana HOM05D004896 ORTHO05D006447 3.2e-158 562.0 331 87.3
BolC4t26350H Brassica oleracea HOM05D004896 ORTHO05D006447 1.6e-157 559.7 331 88.8
A04p13700 Brassica napus HOM05D004896 ORTHO05D006447 4.6e-157 558.1 331 88.5
BraA04t17030Z Brassica rapa HOM05D004896 ORTHO05D006447 4.6e-157 558.1 331 88.5
C04p47490 Brassica napus HOM05D004896 ORTHO05D006447 6.0e-157 557.8 331 88.5
BcaB06g27542 Brassica carinata HOM05D004896 ORTHO05D006447 1.7e-156 556.2 332 88.9
CARHR261290 Cardamine hirsuta HOM05D004896 ORTHO05D006447 5.1e-156 554.7 330 86.7
Carub.0007s3482 Capsella rubella HOM05D004896 ORTHO05D006447 3.1e-153 545.4 331 85.8
Aa31LG9G960 Aethionema arabicum HOM05D004896 ORTHO05D006447 2.0e-144 516.2 331 83.7
THA.LOC104825307 Tarenaya hassleriana HOM05D004896 ORTHO05D006447 1.9e-131 473.0 332 75.0
Cpa.g.sc130.54 Carica papaya HOM05D004896 ORTHO05D006447 4.9e-119 431.8 331 68.3
Ciclev10015882m.g Citrus clementina HOM05D004896 ORTHO05D006447 4.8e-114 415.2 337 65.9
CANSAT64G0177 Cannabis sativa HOM05D004896 ORTHO05D006447 1.8e-113 413.3 336 67.0
ClCG05G013000 Citrullus lanatus HOM05D004896 ORTHO05D006447 3.1e-113 412.5 336 66.7
MD09G1019000 Malus domestica HOM05D004896 ORTHO05D006447 4.0e-113 412.1 337 64.1
Manes.15G155100 Manihot esculenta HOM05D004896 ORTHO05D006447 6.9e-113 411.4 337 65.6
Prupe.3G298100 Prunus persica HOM05D004896 ORTHO05D006447 9.0e-113 411.0 335 67.2
Sed0025595 Sechium edule HOM05D004896 ORTHO05D006447 9.0e-113 411.0 334 65.6
Gohir.A05G342400 Gossypium hirsutum HOM05D004896 ORTHO05D006447 1.2e-112 410.6 334 66.2
Gorai.012G091200 Gossypium raimondii HOM05D004896 ORTHO05D006447 1.2e-112 410.6 334 66.2
CsaV3_3G027540 Cucumis sativus L. HOM05D004896 ORTHO05D006447 1.5e-112 410.2 337 65.3
FvH4_6g52290 Fragaria vesca HOM05D004896 ORTHO05D006447 1.5e-112 410.2 335 64.2
FAN05G4015 Fragaria x ananassa HOM05D004896 ORTHO05D006447 1.5e-112 410.2 335 64.8
COL.COLO4_29242 Corchorus olitorius HOM05D004896 ORTHO05D006447 2.0e-112 409.8 332 66.3
FAN14G4168 Fragaria x ananassa HOM05D004896 ORTHO05D006447 2.6e-112 409.5 335 64.2
Duzib264G0232 Durio zibethinus HOM05D004896 ORTHO05D006447 5.8e-112 408.3 336 66.4
GSVIVG01003974001 Vitis vinifera HOM05D004896 ORTHO05D006447 7.6e-112 407.9 337 63.5
TAR629G1306 Trochodendron aralioides HOM05D004896 ORTHO05D006447 1.3e-111 407.1 271 75.3
PGR142G1575 Punica granatum HOM05D004896 ORTHO05D006447 1.7e-111 406.8 339 66.1
TWI56G0223 Tripterygium wilfordii HOM05D004896 ORTHO05D006447 2.2e-111 406.4 311 68.8
Eucgr.I01701 Eucalyptus grandis HOM05D004896 ORTHO05D006447 3.8e-111 405.6 269 75.8
FAN02G3298 Fragaria x ananassa HOM05D004896 ORTHO05D006447 3.8e-111 405.6 334 63.8
FAN09G1675 Fragaria x ananassa HOM05D004896 ORTHO05D006447 3.8e-111 405.6 333 62.8
Thecc.04G026600 Theobroma cacao HOM05D004896 ORTHO05D006447 1.1e-110 404.1 336 64.9
Phvul.008G145713 Phaseolus vulgaris HOM05D004896 ORTHO05D006447 2.5e-110 402.9 267 75.3
QL02p073334 Quercus lobata HOM05D004896 ORTHO05D006447 3.2e-110 402.5 321 65.1
Psat3g168560 Pisum sativum HOM05D004896 ORTHO05D006447 5.5e-110 401.7 267 76.0
arahy.Tifrunner.gnm1.ann1.10VWGS Arachis hypogaea HOM05D004896 ORTHO05D006447 9.3e-110 401.0 267 75.3
arahy.Tifrunner.gnm1.ann1.5ILH08 Arachis hypogaea HOM05D004896 ORTHO05D006447 9.3e-110 401.0 267 75.3
Actinidia18427 Actinidia chinensis HOM05D004896 ORTHO05D006447 1.2e-109 400.6 340 64.4
Rhsim08G0046600 Rhododendron simsii HOM05D004896 ORTHO05D006447 1.6e-109 400.2 276 73.2
Aqoxy1G02023 Aquilegia oxysepala HOM05D004896 ORTHO05D006447 2.1e-109 399.8 279 73.1
Hma1.2p1_1484F.1_g286400 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 2.1e-109 399.8 301 68.8
RcHm_v2.0_Chr2g0173821 Rosa chinensis HOM05D004896 ORTHO05D006447 2.1e-109 399.8 338 63.0
Sopen02g038330 Solanum pennellii HOM05D004896 ORTHO05D006447 3.5e-109 399.1 338 63.3
MBI19_g04325_MAGBIO Magnolia biondii HOM05D004896 ORTHO05D006447 4.6e-109 398.7 274 72.6
Solyc02g093690.3 Solanum lycopersicum HOM05D004896 ORTHO05D006447 4.6e-109 398.7 338 63.6
Nn5g27187 Nelumbo nucifera HOM05D004896 ORTHO05D006447 6.0e-109 398.3 279 72.8
VMungo1080G0372 Vigna mungo HOM05D004896 ORTHO05D006447 7.9e-109 397.9 314 67.2
Hma1.2p1_1407F.1_g281400 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 1.3e-108 397.1 301 68.4
PGSC0003DMG400012644 Solanum tuberosum HOM05D004896 ORTHO05D006447 1.8e-108 396.7 339 62.5
Ca_03861_v3 Cicer arietinum L. HOM05D004896 ORTHO05D006447 2.3e-108 396.4 267 74.2
CSS0017957 Camellia sinensis var. sinensis HOM05D004896 ORTHO05D006447 3.0e-108 396.0 331 62.2
Lj7A604T65 Lonicera japonica HOM05D004896 ORTHO05D006447 3.0e-108 396.0 268 73.5
Glyma.16G066000 Glycine max HOM05D004896 ORTHO05D006447 3.9e-108 395.6 308 67.2
SGA_v2.0_scaffold135G34930 Striga asiatica HOM05D004896 ORTHO05D006447 6.7e-108 394.8 338 60.9
MSTRG.3120 Avicennia marina HOM05D004896 ORTHO05D006447 8.7e-108 394.4 331 61.3
Hma1.2p1_0383F.1_g140290 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 8.7e-108 394.4 301 68.4
CAN.G473.48 Capsicum annuum HOM05D004896 ORTHO05D006447 1.5e-107 393.7 332 63.3
vmacro18309 Vaccinium macrocarpon HOM05D004896 ORTHO05D006447 1.9e-107 393.3 249 77.9
Lsat_1_v5_gn_0_30781 Lactuca sativa HOM05D004896 ORTHO05D006447 4.3e-107 392.1 278 70.5
Cfa007299 Carpinus fangiana HOM05D004896 ORTHO05D006447 9.7e-107 391.0 339 61.9
Lj1g0027814 Lotus japonicus HOM05D004896 ORTHO05D006447 9.7e-107 391.0 267 74.2
HanXRQChr17g0549471 Helianthus annuus HOM05D004896 ORTHO05D006447 1.3e-106 390.6 272 71.3
Nitab4.5_0001031g0180 Nicotiana tabacum HOM05D004896 ORTHO05D006447 3.7e-106 389.0 336 64.3
Migut.H00045 Erythranthe guttata HOM05D004896 ORTHO05D006447 4.8e-106 388.7 332 62.3
Ah.12g059440 Amaranthus hybridus HOM05D004896 ORTHO05D006447 6.3e-106 388.3 252 74.6
ATR0099G063 Amborella trichopoda HOM05D004896 ORTHO05D006447 6.3e-106 388.3 252 74.2
Ca_01399_v3 Cicer arietinum L. HOM05D004896 ORTHO05D006447 6.3e-106 388.3 267 73.0
Lalb_Chr14g0362991 Lupinus albus HOM05D004896 ORTHO05D006447 1.4e-105 387.1 273 70.7
Nitab4.5_0002158g0160 Nicotiana tabacum HOM05D004896 ORTHO05D006447 1.8e-105 386.7 336 61.6
DCAR_021752 Daucus carota HOM05D004896 ORTHO05D006447 2.4e-105 386.3 272 71.7
ECA246G3787 Erigeron canadensis HOM05D004896 ORTHO05D006447 3.1e-105 386.0 280 69.3
Gohir.D04G080440 Gossypium hirsutum HOM05D004896 ORTHO05D006447 3.1e-105 386.0 318 65.1
Medtr0018s0290 Medicago truncatula HOM05D004896 ORTHO05D006447 9.0e-105 384.4 267 72.3
EL10Ac5g10496 Beta vulgaris HOM05D004896 ORTHO05D006447 2.0e-104 383.3 254 73.6
AUR62030697 Chenopodium quinoa HOM05D004896 ORTHO05D006447 4.5e-104 382.1 251 75.3
EL10Ac9g21007 Beta vulgaris HOM05D004896 ORTHO05D006447 1.0e-103 380.9 254 73.2
AUR62036338 Chenopodium quinoa HOM05D004896 ORTHO05D006447 1.7e-103 380.2 251 75.3
Cc07_g00300 Coffea canephora HOM05D004896 ORTHO05D006447 1.7e-103 380.2 251 74.1
TPR.G1112 Trifolium pratense HOM05D004896 ORTHO05D006447 2.9e-103 379.4 267 71.5
Hund14985 Selenicereus undatus HOM05D004896 ORTHO05D006447 6.5e-103 378.3 272 71.0
Potri.001G338200 Populus trichocarpa HOM05D004896 ORTHO05D006447 8.5e-103 377.9 333 63.1
CiPaw.03G049000 Carya illinoinensis HOM05D004896 ORTHO05D006447 1.4e-102 377.1 272 71.0
Haze_14796 Corylus avellana HOM05D004896 ORTHO05D006447 1.4e-102 377.1 326 62.3
Dinv33394 Davidia involucrata HOM05D004896 ORTHO05D006447 1.4e-102 377.1 296 65.5
Zm00001eb329190 Zea mays HOM05D004896 ORTHO05D006447 2.1e-101 373.2 270 69.6
FvH4_6g52310 Fragaria vesca HOM05D004896 ORTHO05D006447 3.6e-101 372.5 249 73.1
CSS0036459 Camellia sinensis var. sinensis HOM05D004896 ORTHO05D006447 6.1e-101 371.7 383 53.8
PSO675G8471 Papaver somniferum HOM05D004896 ORTHO05D006447 7.9e-101 371.3 323 61.0
unitig_0.g536 Utricularia gibba HOM05D004896 ORTHO05D006447 1.4e-100 370.5 273 66.7
PSO541G0959 Papaver somniferum HOM05D004896 ORTHO05D006447 6.7e-100 368.2 322 60.6
CiPaw.04G032200 Carya illinoinensis HOM05D004896 ORTHO05D006447 2.5e-99 366.3 329 59.9
HPP92_020467 Vanilla planifolia HOM05D004896 ORTHO05D006447 5.7e-99 365.2 276 67.0
Os07g0644000 Oryza sativa ssp. japonica HOM05D004896 ORTHO05D006447 1.7e-98 363.6 254 70.5
CDE07G0249 Ceratophyllum demersum HOM05D004896 ORTHO05D006447 3.7e-98 362.5 299 62.5
MELO3C014823.2 Cucumis melo HOM05D004896 ORTHO05D006447 1.3e-95 354.0 283 67.5
Sabra16G0218900 Salix brachista HOM05D004896 ORTHO05D006447 2.2e-95 353.2 408 50.5
HPP92_026167 Vanilla planifolia HOM05D004896 ORTHO05D006447 5.0e-95 352.1 248 70.6
Atru.chr6.2473 Acer truncatum HOM05D004896 ORTHO05D006447 3.9e-92 342.4 305 62.0
Sc03g0007130 Simmondsia chinensis HOM05D004896 ORTHO05D006447 4.4e-91 339.0 239 71.1
SHI03827 Sapria himalayana HOM05D004896 ORTHO05D006447 8.2e-90 334.7 261 64.8
RcHm_v2.0_Chr2g0174241 Rosa chinensis HOM05D004896 ORTHO05D006447 2.0e-88 330.1 272 63.6
SEGI_10618 Sequoiadendron giganteum HOM05D004896 ORTHO05D006447 1.0e-87 327.8 268 62.7
FAN14G0298 Fragaria x ananassa HOM05D004896 ORTHO05D006447 1.4e-86 323.9 345 53.3
Peaxi162Scf00420g00251 Petunia axillaris HOM05D004896 ORTHO05D006447 8.0e-85 318.2 271 61.3
Oeu064389.1 Olea europaea HOM05D004896 ORTHO05D006447 1.0e-79 301.2 310 53.9
Atru.chr3.2666 Acer truncatum HOM05D004896 ORTHO05D006447 1.7e-74 283.9 233 64.4
Sed0012039 Sechium edule HOM05D004896 ORTHO05D006447 1.8e-73 280.4 275 58.2
SGA_v2.0_scaffold18G08247 Striga asiatica HOM05D004896 ORTHO05D006447 4.7e-69 265.8 276 54.7
Pp3c2_19250 Physcomitrium patens HOM05D004896 ORTHO05D006447 9.8e-59 231.5 254 47.2
SMO200G0187 Selaginella moellendorffii HOM05D004896 ORTHO05D006447 8.3e-58 228.4 238 50.0
MD17G1019600 Malus domestica HOM05D004896 ORTHO05D006447 5.0e-55 219.2 217 55.8
Mapoly0004s0068 Marchantia polymorpha HOM05D004896 ORTHO05D006447 5.0e-55 219.2 236 50.4
Hma1.2p1_1484F.1_g286430 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 5.2e-52 209.1 178 61.8
Actinidia16947 Actinidia chinensis HOM05D004896 ORTHO05D006447 1.5e-51 207.6 207 57.5
Nitab4.5_0002158g0260 Nicotiana tabacum HOM05D002474 ORTHO05D007142 1.7e-50 204.1 209 55.0
EL10Ac5g11826 Beta vulgaris HOM05D004896 ORTHO05D006447 2.4e-49 200.3 150 65.3
AagrBONN_evm.TU.Sc2ySwM_362.2811 Anthoceros agrestis HOM05D004896 ORTHO05D006447 3.2e-49 199.9 274 41.2
Hma1.2p1_1484F.1_g286403 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 2.7e-48 196.8 126 77.8
Hma1.2p1_1484F.1_g286440 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 2.7e-48 196.8 126 77.8
Atru.chr4.450 Acer truncatum HOM05D004896 ORTHO05D006447 3.5e-48 196.4 204 57.8
CBR_g4059 Chara braunii HOM05D004896 ORTHO05D006447 2.3e-47 193.7 247 42.5
Duzib147G0160 Durio zibethinus HOM05D004896 ORTHO05D006447 7.3e-46 188.7 124 77.4
AUR62030692 Chenopodium quinoa HOM05D004896 ORTHO05D006447 6.8e-44 182.2 109 80.7
Cc06_g20980 Coffea canephora HOM05D004896 ORTHO05D006447 1.7e-42 177.6 170 56.5
PRCOL_00001693 Prasinoderma coloniale HOM05D004896 ORTHO05D006447 7.1e-41 172.2 236 40.3
MCO13G572 Micromonas commoda HOM05D004896 ORTHO05D006447 1.1e-38 164.9 253 38.7
BcaC04g20647 Brassica carinata HOM05D004896 ORTHO05D006447 2.1e-32 144.1 77 90.9
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 2.1e-32 144.1 77 90.9
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 2.1e-32 144.1 77 90.9
MBI19_g02443_MAGBIO Magnolia biondii HOM05D004896 ORTHO05D006447 5.1e-31 139.4 90 74.4
Glyma.19G080702 Glycine max HOM05D004896 ORTHO05D006447 1.4e-28 131.3 100 65.0
Atru.chr7.121 Acer truncatum HOM05D005216 ORTHO05D006453 7.6e-27 125.6 89 71.9
BraA05t20477Z Brassica rapa HOM05D004896 ORTHO05D024046 1.7e-26 124.4 81 75.3
Atru.chr11.190 Acer truncatum HOM05D004896 ORTHO05D006447 2.2e-26 124.0 88 70.5
Atru.chr2.3725 Acer truncatum HOM05D004896 ORTHO05D006447 1.3e-23 114.8 66 83.3
Cre17.g726250 Chlamydomonas reinhardtii HOM05D004896 ORTHO05D006447 5.1e-23 112.8 221 33.5
Atru.chr1.36 Acer truncatum HOM05D004896 ORTHO05D006447 1.1e-22 111.7 65 81.5
CDE12G0511 Ceratophyllum demersum HOM05D004896 ORTHO05D006447 1.5e-22 111.3 102 59.8
Atru.chr2.563 Acer truncatum HOM05D004866 ORTHO05D005716 2.5e-22 110.5 65 81.5
BcaB01g05885 Brassica carinata HOM05D004896 ORTHO05D024046 1.4e-17 94.7 80 61.2
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 1.4e-17 94.7 52 88.5
A05p15620 Brassica napus HOM05D004896 ORTHO05D024046 2.7e-16 90.5 60 75.0
Atru.chr1.2050 Acer truncatum HOM05D004896 ORTHO05D006447 6.0e-16 89.4 64 70.3
BcaC01g04583 Brassica carinata HOM05D004896 ORTHO05D006447 1.9e-14 84.3 47 87.2
Ah.07g205180 Amaranthus hybridus HOM05D004896 ORTHO05D060504 4.8e-13 79.7 154 34.4
TAR628G1566 Trochodendron aralioides HOM05D004896 ORTHO05D006447 6.4e-10 69.3 47 68.1
Actinidia35788 Actinidia chinensis HOM05D004896 ORTHO05D006447 4.6e-08 63.2 45 73.3


User provided reference genes

Program Settings