Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 2.2e-54 215.3 104 100.0
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 2.7e-44 181.8 104 83.7
BraA01t01711Z Brassica rapa HOM05D004137 ORTHO05D004804 1.7e-43 179.1 106 81.1
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 5.6e-42 174.1 104 81.7
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 1.3e-41 172.9 104 83.7
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 2.8e-41 171.8 104 81.7
C01p22180 Brassica napus HOM05D004137 ORTHO05D004804 4.0e-40 167.9 106 75.5
BcaNung02428 Brassica carinata HOM05D004137 ORTHO05D004804 1.2e-39 166.4 108 75.0
BcaC09g50691 Brassica carinata HOM05D004137 ORTHO05D004804 1.5e-39 166.0 107 73.8
A01p17580 Brassica napus HOM05D004137 ORTHO05D004804 1.5e-39 166.0 107 76.6
BolC1t02148H Brassica oleracea HOM05D004137 ORTHO05D004804 2.6e-39 165.2 106 73.6
BcaC06g32758 Brassica carinata HOM05D004137 ORTHO05D004804 4.8e-33 144.4 95 74.7
BraA03t14731Z Brassica rapa HOM05D004137 ORTHO05D004804 6.2e-33 144.1 95 73.7
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 1.4e-32 142.9 97 73.2
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 1.4e-32 142.9 97 73.2
A03p56610 Brassica napus HOM05D004137 ORTHO05D004804 5.3e-32 141.0 97 71.1
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 3.3e-26 121.7 107 58.9
Aa31LG3G12400 Aethionema arabicum HOM05D004137 ORTHO05D004804 5.7e-26 120.9 111 56.8
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 4.1e-24 114.8 112 54.5
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 2.5e-21 105.5 68 72.1
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 2.7e-20 102.1 68 70.6
C02p15170 Brassica napus HOM05D004137 ORTHO05D004804 3.5e-20 101.7 104 51.9
BcaC03g14217 Brassica carinata HOM05D004137 ORTHO05D004804 1.0e-19 100.1 104 51.9
Carub.0008s1700 Capsella rubella HOM05D004137 ORTHO05D004804 1.8e-19 99.4 104 50.0
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 8.7e-19 97.1 106 44.3
BcaC04g20079 Brassica carinata HOM05D004137 ORTHO05D004804 1.5e-18 96.3 63 73.0
C09p48110 Brassica napus HOM05D004137 ORTHO05D004804 1.5e-18 96.3 63 73.0
BolC9t57661H Brassica oleracea HOM05D004137 ORTHO05D004804 1.5e-18 96.3 63 73.0
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 9.7e-18 93.6 64 70.3
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 9.7e-18 93.6 64 70.3
C03p15600 Brassica napus HOM05D004137 ORTHO05D004804 2.2e-17 92.4 104 49.0
CARHR270170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 3.7e-17 91.7 68 66.2
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 6.9e-16 87.4 69 53.6
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 3.4e-15 85.1 64 60.9
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 1.3e-14 83.2 62 61.3
BolC3t13997H Brassica oleracea HOM05D004137 ORTHO05D004804 1.7e-14 82.8 104 46.2
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 1.7e-14 82.8 67 59.7
BcaC08g43286 Brassica carinata HOM05D004137 ORTHO05D004804 3.8e-14 81.6 49 73.5
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 8.5e-14 80.5 67 59.7
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.4e-13 79.7 68 55.9
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.4e-13 79.7 68 55.9
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.4e-13 79.7 64 54.7
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 3.2e-13 78.6 68 55.9
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 3.2e-13 78.6 71 54.9
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 7.2e-13 77.4 64 57.8
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 9.4e-13 77.0 68 54.4
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 9.4e-13 77.0 64 54.7
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 2.1e-12 75.9 68 57.4
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 2.1e-12 75.9 63 57.1
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 2.1e-12 75.9 68 50.0
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 2.7e-12 75.5 68 48.5
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 4.6e-12 74.7 63 55.6
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 4.6e-12 74.7 68 55.9
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 6.1e-12 74.3 63 55.6
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 1.0e-11 73.6 69 50.7
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 1.8e-11 72.8 68 54.4
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 3.9e-11 71.6 65 53.8
BcaB01g04405 Brassica carinata HOM05D004137 ORTHO05D004804 5.1e-11 71.2 60 60.0
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 6.7e-11 70.9 69 47.8
Aa31LG3G710 Aethionema arabicum HOM05D004137 ORTHO05D004804 8.8e-11 70.5 45 73.3
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 1.5e-10 69.7 63 54.0
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 1.5e-10 69.7 76 47.4
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 2.5e-10 68.9 63 54.0
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 3.3e-10 68.6 94 37.2
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 3.3e-10 68.6 94 37.2
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 3.3e-10 68.6 62 56.5
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 3.3e-10 68.6 63 57.1
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 4.3e-10 68.2 94 37.2
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 4.3e-10 68.2 63 54.0
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 5.7e-10 67.8 86 44.2
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 5.7e-10 67.8 63 57.1
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 9.7e-10 67.0 116 31.9
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 9.7e-10 67.0 101 39.6
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 9.7e-10 67.0 62 54.8
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 9.7e-10 67.0 69 47.8
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 1.3e-09 66.6 68 42.6
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 1.3e-09 66.6 68 42.6
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 1.3e-09 66.6 63 55.6
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 1.3e-09 66.6 63 55.6
A03p13340 Brassica napus HOM05D004137 ORTHO05D004804 1.7e-09 66.2 50 68.0
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 2.2e-09 65.9 68 39.7
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 2.8e-09 65.5 63 55.6
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 3.7e-09 65.1 68 41.2
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 3.7e-09 65.1 63 54.0
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 6.3e-09 64.3 94 38.3
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 1.1e-08 63.5 68 36.8
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 1.1e-08 63.5 68 36.8
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 1.4e-08 63.2 73 37.0
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 1.4e-08 63.2 63 52.4
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 1.4e-08 63.2 68 48.5
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 1.8e-08 62.8 78 46.2
BolC3t21580H Brassica oleracea HOM05D004137 ORTHO05D004804 1.8e-08 62.8 73 35.6
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 1.8e-08 62.8 68 38.2
BcaC01g01518 Brassica carinata HOM05D004137 ORTHO05D004804 3.1e-08 62.0 73 35.6
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 4.1e-08 61.6 60 51.7
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 6.9e-08 60.8 68 38.2
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 6.9e-08 60.8 68 47.1
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 1.2e-07 60.1 73 35.6
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 1.2e-07 60.1 73 35.6
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 1.2e-07 60.1 63 50.8
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 1.2e-07 60.1 63 54.0
C03p92680 Brassica napus HOM05D004137 ORTHO05D004804 1.5e-07 59.7 73 34.2
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 2.6e-07 58.9 62 40.3
arahy.Tifrunner.gnm1.ann1.K19UZV Arachis hypogaea HOM05D004137 ORTHO05D004804 3.4e-07 58.5 53 50.9
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 5.9e-07 57.8 63 47.6
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 1.0e-06 57.0 68 36.8
ClCG02G024390 Citrullus lanatus HOM05D004137 ORTHO05D004804 1.0e-06 57.0 62 50.0
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 1.0e-06 57.0 62 46.8
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 1.7e-06 56.2 99 34.3
Lj4g0013694 Lotus japonicus HOM05D004137 ORTHO05D004804 2.2e-06 55.8 62 43.5
Aa31LG10G1170 Aethionema arabicum HOM05D004137 ORTHO05D004804 6.5e-06 54.3 68 38.2
CARHR088170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 6.5e-06 54.3 48 43.8
Thhalv10022151m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 6.5e-06 54.3 57 43.9
Potri.013G057832 Populus trichocarpa HOM05D004137 ORTHO05D004804 6.5e-06 54.3 83 37.3


User provided reference genes

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