Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10027004m.g Eutrema salsugineum HOM05D007829 ORTHO05D009903 1.2e-68 263.1 131 100.0
Sp7g20500 Schrenkiella parvula HOM05D007829 ORTHO05D009903 4.4e-60 234.6 131 86.3
CARHR229280 Cardamine hirsuta HOM05D007829 ORTHO05D009903 1.6e-57 226.1 131 84.0
BraA01t01318Z Brassica rapa HOM05D007829 ORTHO05D009903 2.3e-56 222.2 131 82.4
C01p16640 Brassica napus HOM05D007829 ORTHO05D009903 2.5e-55 218.8 131 80.9
BolC1t01611H Brassica oleracea HOM05D007829 ORTHO05D009903 2.5e-55 218.8 131 80.9
BcaC09g51100 Brassica carinata HOM05D007829 ORTHO05D009903 7.3e-55 217.2 131 80.2
Carub.0007s1893 Capsella rubella HOM05D007829 ORTHO05D009903 1.8e-53 212.6 131 79.4
A01p13730 Brassica napus HOM05D007829 ORTHO05D009903 1.2e-52 209.9 131 76.3
Aa31LG6G4470 Aethionema arabicum HOM05D007829 ORTHO05D009903 1.5e-52 209.5 146 71.2
THA.LOC104813576 Tarenaya hassleriana HOM05D007829 ORTHO05D009903 1.6e-49 199.5 130 70.0
AT4G22370 Arabidopsis thaliana HOM05D007829 ORTHO05D009903 3.5e-49 198.4 131 76.3
AL7G31240 Arabidopsis lyrata HOM05D007829 ORTHO05D009903 7.3e-47 190.7 131 73.3
Actinidia39272 Actinidia chinensis HOM05D007829 ORTHO05D009903 7.6e-28 127.5 122 52.5
Cpa.g.sc75.113 Carica papaya HOM05D007829 ORTHO05D009903 2.2e-27 125.9 118 47.5
Rhsim02G0099400 Rhododendron simsii HOM05D007829 ORTHO05D009903 2.2e-27 125.9 116 50.9
Prupe.4G010000 Prunus persica HOM05D007829 ORTHO05D009903 2.9e-27 125.6 113 50.4
Dinv07407 Davidia involucrata HOM05D007829 ORTHO05D009903 8.4e-27 124.0 135 46.7
Hma1.2p1_0657F.1_g197120 Hydrangea macrophylla HOM05D007829 ORTHO05D009903 1.1e-26 123.6 125 47.2
PGR004G1136 Punica granatum HOM05D007829 ORTHO05D009903 2.4e-26 122.5 124 50.8
arahy.Tifrunner.gnm1.ann1.G424KC Arachis hypogaea HOM05D007829 ORTHO05D009903 3.2e-26 122.1 125 48.8
CSS0014217 Camellia sinensis var. sinensis HOM05D007829 ORTHO05D009903 3.2e-26 122.1 125 49.6
MD10G1332100 Malus domestica HOM05D007829 ORTHO05D009903 3.2e-26 122.1 123 48.8
Migut.M01399 Erythranthe guttata HOM05D007829 ORTHO05D009903 4.2e-26 121.7 127 48.0
Sc05g0009620 Simmondsia chinensis HOM05D007829 ORTHO05D009903 4.2e-26 121.7 125 47.2
CiPaw.10G078200 Carya illinoinensis HOM05D007829 ORTHO05D009903 5.5e-26 121.3 124 46.0
Manes.08G071000 Manihot esculenta HOM05D007829 ORTHO05D009903 5.5e-26 121.3 115 47.0
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 7.1e-26 120.9 96 59.4
Eucgr.D01411 Eucalyptus grandis HOM05D007829 ORTHO05D009903 7.1e-26 120.9 120 50.8
Nn1g07397 Nelumbo nucifera HOM05D007829 ORTHO05D009903 2.1e-25 119.4 128 46.1
SGA_v2.0_scaffold4G01872 Striga asiatica HOM05D007829 ORTHO05D009903 2.7e-25 119.0 125 47.2
TAR629G0037 Trochodendron aralioides HOM05D007829 ORTHO05D009903 4.6e-25 118.2 112 49.1
Potri.016G013200 Populus trichocarpa HOM05D007829 ORTHO05D009903 7.9e-25 117.5 115 45.2
TWI38G1785 Tripterygium wilfordii HOM05D007829 ORTHO05D009903 1.0e-24 117.1 126 48.4
Oeu002768.1 Olea europaea HOM05D007829 ORTHO05D009903 1.3e-24 116.7 125 47.2
Cc00_g34400 Coffea canephora HOM05D007829 ORTHO05D009903 1.8e-24 116.3 151 43.7
Lj6g0010113 Lotus japonicus HOM05D007829 ORTHO05D009903 2.3e-24 115.9 124 44.4
PSO541G5076 Papaver somniferum HOM05D007829 ORTHO05D009903 6.7e-24 114.4 91 54.9
Ciclev10018278m.g Citrus clementina HOM05D007829 ORTHO05D009903 1.1e-23 113.6 78 64.1
Sabra16G0002200 Salix brachista HOM05D007829 ORTHO05D009903 2.5e-23 112.5 123 42.3
Sabra16G0015800 Salix brachista HOM05D007829 ORTHO05D009903 2.5e-23 112.5 123 42.3
Aqoxy2G02687 Aquilegia oxysepala HOM05D007829 ORTHO05D009903 4.3e-23 111.7 95 49.5
PSO675G8147 Papaver somniferum HOM05D007829 ORTHO05D009903 5.6e-23 111.3 130 43.8
Gohir.A10G009200 Gossypium hirsutum HOM05D007829 ORTHO05D009903 7.4e-23 110.9 91 49.5
Thecc.06G233800 Theobroma cacao HOM05D007829 ORTHO05D009903 9.6e-23 110.5 123 43.9
Gorai.011G009700 Gossypium raimondii HOM05D007829 ORTHO05D009903 1.1e-21 107.1 122 40.2
Phvul.006G143000 Phaseolus vulgaris HOM05D007829 ORTHO05D009903 1.1e-21 107.1 124 40.3
Gohir.D10G008900 Gossypium hirsutum HOM05D007829 ORTHO05D009903 1.4e-21 106.7 122 39.3
Psat1g175960 Pisum sativum HOM05D007829 ORTHO05D009903 1.4e-21 106.7 127 41.7
COL.COLO4_31889 Corchorus olitorius HOM05D007829 ORTHO05D009903 5.3e-21 104.8 118 40.7
VMungo0540G1426 Vigna mungo HOM05D007829 ORTHO05D009903 9.0e-21 104.0 125 40.8
TPR.G13103 Trifolium pratense HOM05D007829 ORTHO05D009903 1.2e-20 103.6 127 41.7
TAR627G0564 Trochodendron aralioides HOM05D007829 ORTHO05D009903 4.5e-20 101.7 129 41.1
TAR627G1193 Trochodendron aralioides HOM05D007829 ORTHO05D009903 4.5e-20 101.7 129 41.1
Medtr2g025760 Medicago truncatula HOM05D007829 ORTHO05D009903 1.0e-19 100.5 128 41.4
FvH4_3g00940 Fragaria vesca HOM05D007829 ORTHO05D009903 2.2e-19 99.4 116 41.4
FAN21G3309 Fragaria x ananassa HOM05D007829 ORTHO05D009903 1.4e-18 96.7 118 39.8
Glyma.09G010400 Glycine max HOM05D007829 ORTHO05D009903 1.9e-18 96.3 125 38.4
Glyma.15G114900 Glycine max HOM05D007829 ORTHO05D009903 4.2e-18 95.1 125 37.6
RcHm_v2.0_Chr5g0001461 Rosa chinensis HOM05D007829 ORTHO05D009903 4.2e-18 95.1 124 43.5
CANSAT56G1477 Cannabis sativa HOM05D007829 ORTHO05D009903 5.5e-18 94.7 95 42.1
Lalb_Chr15g0088001 Lupinus albus HOM05D007829 ORTHO05D009903 3.5e-17 92.0 114 40.4
FAN25G0937 Fragaria x ananassa HOM05D007829 ORTHO05D009903 6.7e-16 87.8 136 36.0
Solyc11g012300.1 Solanum lycopersicum HOM05D007829 ORTHO05D009903 1.5e-15 86.7 117 37.6
Sopen11g007080 Solanum pennellii HOM05D007829 ORTHO05D009903 1.5e-15 86.7 117 37.6
PGSC0003DMG400013350 Solanum tuberosum HOM05D007829 ORTHO05D009903 1.9e-15 86.3 88 46.6
unitig_5.g30996 Utricularia gibba HOM05D000093 ORTHO05D001309 5.7e-15 84.7 116 41.4
CDE11G1237 Ceratophyllum demersum HOM05D007829 ORTHO05D009903 7.4e-15 84.3 81 46.9
QL05p069622 Quercus lobata HOM05D007829 ORTHO05D009903 4.1e-13 78.6 126 37.3
Duzib235G0645 Durio zibethinus HOM05D007829 ORTHO05D009903 5.9e-12 74.7 61 50.8
ATR0712G049 Amborella trichopoda HOM05D007829 ORTHO05D009903 2.9e-11 72.4 78 38.5
MBI19_g06149_MAGBIO Magnolia biondii HOM05D007829 ORTHO05D009903 3.8e-11 72.0 61 50.8
ClCG01G021470 Citrullus lanatus HOM05D007829 ORTHO05D009903 2.5e-10 69.3 62 43.5
Peaxi162Scf00352g00215 Petunia axillaris HOM05D007829 ORTHO05D009903 1.6e-09 66.6 63 42.9
Sed0017863 Sechium edule HOM05D007829 ORTHO05D009903 4.6e-09 65.1 80 37.5
CsaV3_6G048490 Cucumis sativus L. HOM05D007829 ORTHO05D009903 1.8e-08 63.2 70 32.9
Sed0022750 Sechium edule HOM05D007829 ORTHO05D009903 3.9e-08 62.0 63 39.7
SalBow8G1028 Salvia bowleyana HOM05D007829 ORTHO05D009903 1.1e-07 60.5 122 35.2
Solyc11g012310.1 Solanum lycopersicum HOM05D007829 ORTHO05D009903 1.1e-07 60.5 79 40.5
SEGI_16879 Sequoiadendron giganteum HOM05D002745 ORTHO05D002945 1.6e-06 56.6 96 34.4
CSS0032449 Camellia sinensis var. sinensis HOM05D002745 ORTHO05D002945 8.2e-06 54.3 72 40.3


User provided reference genes

Program Settings