Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 1.3e-35 152.5 78 100.0
BcaC09g50920 Brassica carinata HOM05D003086 ORTHO05D003347 1.3e-27 125.9 79 82.3
C01p19250 Brassica napus HOM05D003086 ORTHO05D003347 1.3e-27 125.9 79 82.3
BolC1t01850H Brassica oleracea HOM05D003086 ORTHO05D003347 1.3e-27 125.9 79 82.3
BraA01t01474Z Brassica rapa HOM05D003086 ORTHO05D003347 1.3e-27 125.9 79 82.3
BraA08t32861Z Brassica rapa HOM05D003086 ORTHO05D003347 1.3e-27 125.9 79 82.3
BcaNung01108 Brassica carinata HOM05D003086 ORTHO05D003347 2.5e-26 121.7 79 79.7
Thhalv10015091m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 1.2e-23 112.8 62 87.1
BcaNung06471 Brassica carinata HOM05D003086 ORTHO05D003347 4.4e-23 110.9 85 70.6
C07p53320 Brassica napus HOM05D003086 ORTHO05D003347 4.4e-23 110.9 85 70.6
BolC7t45826H Brassica oleracea HOM05D003086 ORTHO05D003347 4.4e-23 110.9 85 70.6
AT4G24026 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 2.2e-22 108.6 79 73.4
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 2.2e-22 108.6 84 71.4
BcaNung05697 Brassica carinata HOM05D003086 ORTHO05D003347 4.9e-22 107.5 85 69.4
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 4.9e-22 107.5 85 72.9
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 8.3e-22 106.7 75 73.3
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 2.4e-21 105.1 75 73.3
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 2.4e-21 105.1 75 72.0
AL7G29250 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 5.4e-21 104.0 80 72.5
Carub.0007s1706 Capsella rubella HOM05D003086 ORTHO05D003347 1.5e-18 95.9 82 65.9
Thhalv10029101m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 1.5e-18 95.9 75 70.7
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 5.5e-18 94.0 68 70.6
Aa31LG9G11270 Aethionema arabicum HOM05D003086 ORTHO05D003347 1.6e-17 92.4 75 66.7
BcaB05g23876 Brassica carinata HOM05D003086 ORTHO05D003347 3.6e-17 91.3 75 66.7
BcaB05g23875 Brassica carinata HOM05D003086 ORTHO05D003347 1.8e-16 89.0 75 65.3
A02p26470 Brassica napus HOM05D003086 ORTHO05D003347 2.3e-16 88.6 81 63.0
A03p54930 Brassica napus HOM05D003086 ORTHO05D003347 2.3e-16 88.6 86 61.6
BraA02t07650Z Brassica rapa HOM05D003086 ORTHO05D003347 2.3e-16 88.6 81 63.0
BraA03t14558Z Brassica rapa HOM05D003086 ORTHO05D003347 2.3e-16 88.6 86 61.6
Sp6g06680 Schrenkiella parvula HOM05D003086 ORTHO05D003347 2.3e-16 88.6 63 74.6
BcaB01g02737 Brassica carinata HOM05D003086 ORTHO05D003347 9.8e-15 83.2 85 60.0
BcaC01g04661 Brassica carinata HOM05D003086 ORTHO05D003347 9.8e-15 83.2 85 60.0
C03p35200 Brassica napus HOM05D003086 ORTHO05D003347 9.8e-15 83.2 85 60.0
BolC3t15831H Brassica oleracea HOM05D003086 ORTHO05D003347 9.8e-15 83.2 85 60.0
A03p29280 Brassica napus HOM05D003086 ORTHO05D003347 1.3e-14 82.8 86 59.3
BraA03t12124Z Brassica rapa HOM05D003086 ORTHO05D003347 1.3e-14 82.8 86 59.3
C09p35950 Brassica napus HOM05D003086 ORTHO05D003347 1.1e-13 79.7 81 61.7
BolC9t56428H Brassica oleracea HOM05D003086 ORTHO05D003347 1.1e-13 79.7 81 61.7
BcaC05g27913 Brassica carinata HOM05D003086 ORTHO05D003347 1.4e-13 79.3 75 62.7
C05p39210 Brassica napus HOM05D003086 ORTHO05D003347 1.4e-13 79.3 75 62.7
BolC5t32654H Brassica oleracea HOM05D003086 ORTHO05D003347 1.4e-13 79.3 75 62.7
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 1.2e-12 76.3 63 58.7
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 1.6e-12 75.9 75 53.3
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 2.0e-12 75.5 67 58.2
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 4.6e-12 74.3 72 54.2
Manes.02G005600 Manihot esculenta HOM05D003086 ORTHO05D003347 4.6e-12 74.3 78 52.6
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 4.6e-12 74.3 63 57.1
FAN04G2505 Fragaria x ananassa HOM05D003086 ORTHO05D003347 7.8e-12 73.6 67 58.2
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 1.0e-11 73.2 65 61.5
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 1.3e-11 72.8 71 49.3
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 3.9e-11 71.2 65 58.5
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 3.9e-11 71.2 65 58.5
A09p28400 Brassica napus HOM05D003086 ORTHO05D003347 5.0e-11 70.9 81 55.6
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 5.0e-11 70.9 68 54.4
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 5.0e-11 70.9 63 55.6
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 6.6e-11 70.5 56 64.3
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 8.6e-11 70.1 58 62.1
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 1.1e-10 69.7 62 62.9
BraA09t38405Z Brassica rapa HOM05D003086 ORTHO05D003347 1.1e-10 69.7 74 55.4
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 1.1e-10 69.7 68 58.8
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 1.5e-10 69.3 66 57.6
Manes.01G053400 Manihot esculenta HOM05D003086 ORTHO05D003347 1.5e-10 69.3 82 46.3
RcHm_v2.0_Chr7g0186341 Rosa chinensis HOM05D003086 ORTHO05D003347 1.5e-10 69.3 65 56.9
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 1.9e-10 68.9 59 57.6
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 3.3e-10 68.2 66 59.1
Gohir.A08G111400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 3.3e-10 68.2 57 59.6
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 4.3e-10 67.8 63 58.7
Sabra01G0063400 Salix brachista HOM05D003086 ORTHO05D003347 4.3e-10 67.8 69 55.1
Gohir.D08G124400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.6e-10 67.4 57 59.6
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 5.6e-10 67.4 59 57.6
Aa31LG2G1580 Aethionema arabicum HOM05D000001 ORTHO05D000003 7.3e-10 67.0 65 55.4
FvH4_5g11470 Fragaria vesca HOM05D003086 ORTHO05D003347 9.5e-10 66.6 65 56.9
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 9.5e-10 66.6 60 58.3
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 1.2e-09 66.2 59 59.3
CARHR046350 Cardamine hirsuta HOM05D003086 ORTHO05D003347 1.6e-09 65.9 62 58.1
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 1.6e-09 65.9 65 53.8
Migut.N01532 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.6e-09 65.9 55 56.4
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 1.6e-09 65.9 58 60.3
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 1.6e-09 65.9 59 55.9
AT1G64584 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 2.8e-09 65.1 79 51.9
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.8e-09 65.1 66 56.1
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 3.6e-09 64.7 52 63.5
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 3.6e-09 64.7 64 51.6
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 3.6e-09 64.7 67 50.7
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 3.6e-09 64.7 59 59.3
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 3.6e-09 64.7 59 57.6
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 6.2e-09 63.9 63 57.1
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 8.0e-09 63.5 67 55.2
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 8.0e-09 63.5 62 53.2
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 1.0e-08 63.2 55 56.4
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 1.4e-08 62.8 63 55.6
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 1.8e-08 62.4 51 60.8
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 1.8e-08 62.4 64 50.0
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.8e-08 62.4 55 54.5
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.8e-08 62.4 59 54.2
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.8e-08 62.4 59 54.2
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.8e-08 62.4 59 54.2
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 1.8e-08 62.4 61 49.2
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 2.3e-08 62.0 56 57.1
CANSAT21G0721 Cannabis sativa HOM05D003086 ORTHO05D003347 2.3e-08 62.0 66 54.5
Ciclev10023176m.g Citrus clementina HOM05D003086 ORTHO05D003347 2.3e-08 62.0 68 54.4
Ciclev10033638m.g Citrus clementina HOM05D003086 ORTHO05D003347 2.3e-08 62.0 68 54.4
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 2.3e-08 62.0 62 53.2
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 2.3e-08 62.0 54 59.3
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 3.1e-08 61.6 51 60.8
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 3.1e-08 61.6 51 60.8
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 3.1e-08 61.6 57 50.9
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 3.1e-08 61.6 54 59.3
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 3.1e-08 61.6 59 55.9
QL02p028382 Quercus lobata HOM05D003086 ORTHO05D003347 4.0e-08 61.2 68 45.6
Sed0015662 Sechium edule HOM05D003086 ORTHO05D003347 4.0e-08 61.2 48 62.5
TWI60G1451 Tripterygium wilfordii HOM05D003086 ORTHO05D003347 4.0e-08 61.2 57 63.2
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 5.2e-08 60.8 67 50.7
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 1.2e-07 59.7 57 52.6
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 1.2e-07 59.7 56 60.7
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 1.5e-07 59.3 50 62.0
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 1.5e-07 59.3 62 50.0
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.5e-07 59.3 59 54.2
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 2.0e-07 58.9 66 51.5
EL10Ac3g05245 Beta vulgaris HOM05D003086 ORTHO05D003347 2.0e-07 58.9 56 57.1
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 2.0e-07 58.9 57 54.4
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 2.0e-07 58.9 54 53.7
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 2.0e-07 58.9 65 50.8
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 3.4e-07 58.2 73 46.6
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 3.4e-07 58.2 64 50.0
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 3.4e-07 58.2 57 52.6
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 3.4e-07 58.2 57 52.6
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 3.4e-07 58.2 57 52.6
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 4.4e-07 57.8 54 57.4
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 4.4e-07 57.8 54 50.0
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 5.8e-07 57.4 57 54.4
DCAR_022130 Daucus carota HOM05D003086 ORTHO05D003347 7.5e-07 57.0 81 40.7
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 7.5e-07 57.0 57 50.9
HPP92_013003 Vanilla planifolia HOM05D003086 ORTHO05D003347 7.5e-07 57.0 68 48.5
Ah.13g070480 Amaranthus hybridus HOM05D003086 ORTHO05D003347 9.8e-07 56.6 56 53.6
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 1.3e-06 56.2 57 52.6
Phvul.010G115200 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 1.3e-06 56.2 59 50.8
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 1.3e-06 56.2 46 56.5
Actinidia18664 Actinidia chinensis HOM05D003086 ORTHO05D003347 1.7e-06 55.8 49 59.2
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 1.7e-06 55.8 57 52.6
CDE02G0840 Ceratophyllum demersum HOM05D003086 ORTHO05D003347 1.7e-06 55.8 47 57.4
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 1.7e-06 55.8 54 53.7
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.7e-06 55.8 51 51.0
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 1.7e-06 55.8 53 54.7
MD14G1134500 Malus domestica HOM05D003086 ORTHO05D003347 1.7e-06 55.8 42 69.0
SalBow3G3175 Salvia bowleyana HOM05D003086 ORTHO05D003347 1.7e-06 55.8 54 50.0
Duzib084G0307 Durio zibethinus HOM05D003086 ORTHO05D003347 2.2e-06 55.5 44 61.4
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.2e-06 55.5 48 52.1
Potri.003G143800 Populus trichocarpa HOM05D003086 ORTHO05D003347 2.2e-06 55.5 51 60.8
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 2.9e-06 55.1 66 43.9
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 2.9e-06 55.1 42 61.9
CSS0003230 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 3.7e-06 54.7 52 51.9
CSS0024306 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 3.7e-06 54.7 52 51.9
ClCG01G001890 Citrullus lanatus HOM05D003086 ORTHO05D003347 3.7e-06 54.7 67 47.8
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 4.9e-06 54.3 60 45.0
Os10g0502100 Oryza sativa ssp. japonica HOM05D003086 ORTHO05D003347 4.9e-06 54.3 55 50.9
Lalb_Chr05g0223911 Lupinus albus HOM05D003086 ORTHO05D003347 6.4e-06 53.9 59 55.9
Psat7g022720 Pisum sativum HOM05D003086 ORTHO05D003347 6.4e-06 53.9 43 65.1
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 6.4e-06 53.9 45 57.8
AUR62006063 Chenopodium quinoa HOM05D003086 ORTHO05D003347 8.3e-06 53.5 35 68.6
AUR62035564 Chenopodium quinoa HOM05D003086 ORTHO05D003347 8.3e-06 53.5 35 68.6
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 8.3e-06 53.5 45 51.1
SHI06941 Sapria himalayana HOM05D003472 ORTHO05D004200 8.3e-06 53.5 61 47.5
Sopen03g022700 Solanum pennellii HOM05D003086 ORTHO05D003347 8.3e-06 53.5 57 50.9
PGSC0003DMG400018543 Solanum tuberosum HOM05D003086 ORTHO05D003347 8.3e-06 53.5 57 50.9


User provided reference genes

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