Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10026740m.g Eutrema salsugineum HOM05D002547 ORTHO05D002649 9.6e-25 115.9 55 100.0
Thhalv10026129m.g Eutrema salsugineum HOM05D002547 ORTHO05D002649 5.8e-22 106.7 54 90.7
Thhalv10025615m.g Eutrema salsugineum HOM05D002547 ORTHO05D002649 1.6e-19 98.6 54 88.9
CARHR220580 Cardamine hirsuta HOM05D002547 ORTHO05D002649 2.9e-13 77.8 51 66.7
Sp7g12440 Schrenkiella parvula HOM05D002547 ORTHO05D002649 2.9e-13 77.8 51 70.6
BraA07t29686Z Brassica rapa HOM05D002547 ORTHO05D002649 1.1e-12 75.9 51 66.7
C03p89580 Brassica napus HOM05D002547 ORTHO05D002649 1.4e-12 75.5 50 64.0
BcaC01g01224 Brassica carinata HOM05D002547 ORTHO05D002649 4.2e-12 73.9 50 62.0
A07p19820 Brassica napus HOM05D002547 ORTHO05D002649 4.2e-12 73.9 51 64.7
BolC3t21272H Brassica oleracea HOM05D002547 ORTHO05D002649 4.2e-12 73.9 50 62.0
A08p03200 Brassica napus HOM05D002547 ORTHO05D002649 9.3e-12 72.8 50 62.0
BraA08t32352Z Brassica rapa HOM05D002547 ORTHO05D002649 9.3e-12 72.8 50 62.0
BcaC08g44403 Brassica carinata HOM05D002547 ORTHO05D002649 2.1e-11 71.6 51 62.7
C06p18390 Brassica napus HOM05D002547 ORTHO05D002649 2.1e-11 71.6 51 62.7
BolC6t37052H Brassica oleracea HOM05D002547 ORTHO05D002649 6.1e-11 70.1 51 60.8
AT4G14365 Arabidopsis thaliana HOM05D002547 ORTHO05D002649 1.3e-10 68.9 51 62.7
Carub.0007s2789 Capsella rubella HOM05D002547 ORTHO05D002649 1.3e-10 68.9 51 64.7
MELO3C022999.2 Cucumis melo HOM05D002547 ORTHO05D002649 5.1e-10 67.0 51 56.9
BcaB02g10114 Brassica carinata HOM05D002547 ORTHO05D002649 6.7e-10 66.6 51 60.8
vmacro08479 Vaccinium macrocarpon HOM05D002547 ORTHO05D002649 8.7e-10 66.2 51 54.9
Aqoxy2G03657 Aquilegia oxysepala HOM05D002547 ORTHO05D002649 1.1e-09 65.9 51 54.9
MBI07_g16925_MAGBIO Magnolia biondii HOM05D002547 ORTHO05D002649 1.1e-09 65.9 51 52.9
Nn3g19668 Nelumbo nucifera HOM05D002547 ORTHO05D002649 1.1e-09 65.9 51 56.9
CSS0040189 Camellia sinensis var. sinensis HOM05D002547 ORTHO05D002649 1.5e-09 65.5 51 56.9
Actinidia04444 Actinidia chinensis HOM05D002547 ORTHO05D002649 1.9e-09 65.1 51 52.9
Eucgr.H03040 Eucalyptus grandis HOM05D002547 ORTHO05D002649 1.9e-09 65.1 51 52.9
Sed0022557 Sechium edule HOM05D002547 ORTHO05D002649 1.9e-09 65.1 51 56.9
BcaB06g26471 Brassica carinata HOM05D002547 ORTHO05D002649 2.5e-09 64.7 51 54.9
A07p09190 Brassica napus HOM05D002547 ORTHO05D002649 2.5e-09 64.7 51 54.9
C07p14180 Brassica napus HOM05D002547 ORTHO05D002649 2.5e-09 64.7 51 54.9
BolC7t41914H Brassica oleracea HOM05D002547 ORTHO05D002649 2.5e-09 64.7 51 54.9
BraA07t28714Z Brassica rapa HOM05D002547 ORTHO05D002649 2.5e-09 64.7 51 54.9
SHI00710 Sapria himalayana HOM05D002547 ORTHO05D002649 2.5e-09 64.7 51 51.0
DCAR_027320 Daucus carota HOM05D002547 ORTHO05D002649 3.3e-09 64.3 51 54.9
AL7G41860 Arabidopsis lyrata HOM05D002547 ORTHO05D002649 4.3e-09 63.9 51 58.8
CsaV3_2G012750 Cucumis sativus L. HOM05D002547 ORTHO05D002649 4.3e-09 63.9 51 52.9
Gohir.A10G111700 Gossypium hirsutum HOM05D002547 ORTHO05D002649 4.3e-09 63.9 51 54.9
Gohir.D10G156800 Gossypium hirsutum HOM05D002547 ORTHO05D002649 4.3e-09 63.9 51 54.9
Gorai.011G174600 Gossypium raimondii HOM05D002547 ORTHO05D002649 4.3e-09 63.9 51 54.9
Lalb_Chr21g0312051 Lupinus albus HOM05D002547 ORTHO05D002649 4.3e-09 63.9 51 52.9
QL06p018143 Quercus lobata HOM05D002547 ORTHO05D002649 4.3e-09 63.9 51 54.9
arahy.Tifrunner.gnm1.ann1.CN7ZZH Arachis hypogaea HOM05D002547 ORTHO05D002649 5.7e-09 63.5 51 51.0
arahy.Tifrunner.gnm1.ann1.KT8NWR Arachis hypogaea HOM05D002547 ORTHO05D002649 5.7e-09 63.5 51 51.0
A01p31700 Brassica napus HOM05D002547 ORTHO05D002649 5.7e-09 63.5 51 54.9
BraA01t03298Z Brassica rapa HOM05D002547 ORTHO05D002649 5.7e-09 63.5 51 54.9
Lalb_Chr06g0169051 Lupinus albus HOM05D002547 ORTHO05D002649 5.7e-09 63.5 51 51.0
Sabra08G0127700 Salix brachista HOM05D002547 ORTHO05D002649 5.7e-09 63.5 51 52.9
TAR365G0526 Trochodendron aralioides HOM05D002547 ORTHO05D002649 5.7e-09 63.5 51 51.0
HPP92_008602 Vanilla planifolia HOM05D002547 ORTHO05D002649 5.7e-09 63.5 51 56.9
BcaC09g49278 Brassica carinata HOM05D002547 ORTHO05D002649 7.4e-09 63.2 51 54.9
C01p40620 Brassica napus HOM05D002547 ORTHO05D002649 7.4e-09 63.2 51 54.9
Carub.0003s2638 Capsella rubella HOM05D002547 ORTHO05D002649 7.4e-09 63.2 51 52.9
ClCG06G007010 Citrullus lanatus HOM05D002547 ORTHO05D002649 7.4e-09 63.2 51 52.9
Thhalv10020731m.g Eutrema salsugineum HOM05D002547 ORTHO05D002649 7.4e-09 63.2 51 52.9
SEGI_11041 Sequoiadendron giganteum HOM05D002547 ORTHO05D002649 7.4e-09 63.2 51 54.9
THA.LOC104804754 Tarenaya hassleriana HOM05D002547 ORTHO05D002649 7.4e-09 63.2 51 51.0
Nitab4.5_0003591g0010 Nicotiana tabacum HOM05D002547 ORTHO05D002649 9.7e-09 62.8 51 52.9
Pp3c23_11570 Physcomitrium patens HOM05D002547 ORTHO05D002649 9.7e-09 62.8 52 55.8
Solyc09g090160.3 Solanum lycopersicum HOM05D002547 ORTHO05D002649 9.7e-09 62.8 51 51.0
Sopen09g033080 Solanum pennellii HOM05D002547 ORTHO05D002649 9.7e-09 62.8 51 51.0
SGA_v2.0_scaffold67G22739 Striga asiatica HOM05D002547 ORTHO05D002649 9.7e-09 62.8 51 51.0
Thecc.04G256300 Theobroma cacao HOM05D002547 ORTHO05D002649 9.7e-09 62.8 51 52.9
TAR633G0638 Trochodendron aralioides HOM05D002547 ORTHO05D002649 9.7e-09 62.8 51 52.9
Aa31LG8G9820 Aethionema arabicum HOM05D002547 ORTHO05D002649 1.3e-08 62.4 51 52.9
Duzib151G0140 Durio zibethinus HOM05D002547 ORTHO05D002649 1.3e-08 62.4 51 54.9
Sabra10G0036600 Salix brachista HOM05D002547 ORTHO05D002649 1.3e-08 62.4 51 52.9
Sp3g20940 Schrenkiella parvula HOM05D002547 ORTHO05D002649 1.3e-08 62.4 51 52.9
Cfa022964 Carpinus fangiana HOM05D002547 ORTHO05D002649 1.6e-08 62.0 51 51.0
Ciclev10004847m.g Citrus clementina HOM05D002547 ORTHO05D002649 1.6e-08 62.0 51 49.0
SMO358G0400 Selaginella moellendorffii HOM05D002547 ORTHO05D002649 1.6e-08 62.0 52 53.8
GSVIVG01027825001 Vitis vinifera HOM05D002547 ORTHO05D002649 1.6e-08 62.0 51 52.9
Ca_09864_v3 Cicer arietinum L. HOM05D002547 ORTHO05D002649 2.2e-08 61.6 51 51.0
Manes.15G041400 Manihot esculenta HOM05D002547 ORTHO05D002649 2.2e-08 61.6 51 51.0
Nn1g02785 Nelumbo nucifera HOM05D002547 ORTHO05D002649 2.2e-08 61.6 51 51.0
Potri.008G167600 Populus trichocarpa HOM05D002547 ORTHO05D002649 2.2e-08 61.6 51 51.0
AT3G23280 Arabidopsis thaliana HOM05D002547 ORTHO05D002649 2.8e-08 61.2 51 51.0
Dinv27056 Davidia involucrata HOM05D002547 ORTHO05D002649 2.8e-08 61.2 51 49.0
ECA240G4098 Erigeron canadensis HOM05D002547 ORTHO05D002649 2.8e-08 61.2 51 54.9
Atru.chr4.2051 Acer truncatum HOM05D002547 ORTHO05D002649 3.7e-08 60.8 51 52.9
Aa31LG9G2960 Aethionema arabicum HOM05D002547 ORTHO05D002649 3.7e-08 60.8 51 56.9
Cc03_g05610 Coffea canephora HOM05D002547 ORTHO05D002649 3.7e-08 60.8 51 51.0
Hma1.2p1_0992F.1_g245230 Hydrangea macrophylla HOM05D002547 ORTHO05D002649 3.7e-08 60.8 51 51.0
Lsat_1_v5_gn_3_118301 Lactuca sativa HOM05D002547 ORTHO05D002649 3.7e-08 60.8 51 52.9
Manes.03G163701 Manihot esculenta HOM05D002547 ORTHO05D002649 3.7e-08 60.8 51 51.0
Peaxi162Scf01265g00123 Petunia axillaris HOM05D002547 ORTHO05D002649 3.7e-08 60.8 51 51.0
Potri.010G070800 Populus trichocarpa HOM05D002547 ORTHO05D002649 3.7e-08 60.8 51 52.9
Prupe.1G040200 Prunus persica HOM05D002547 ORTHO05D002649 3.7e-08 60.8 51 51.0
PGSC0003DMG400017222 Solanum tuberosum HOM05D002547 ORTHO05D002649 3.7e-08 60.8 51 49.0
Zm00001eb306280 Zea mays HOM05D002547 ORTHO05D002649 3.7e-08 60.8 51 45.1
MSTRG.24679 Avicennia marina HOM05D002547 ORTHO05D002649 4.8e-08 60.5 51 47.1
CARHR099240 Cardamine hirsuta HOM05D002547 ORTHO05D002649 4.8e-08 60.5 51 49.0
Migut.G00512 Erythranthe guttata HOM05D002547 ORTHO05D002649 4.8e-08 60.5 51 47.1
FvH4_4g03720 Fragaria vesca HOM05D002547 ORTHO05D002649 4.8e-08 60.5 51 51.0
FAN12G1556 Fragaria x ananassa HOM05D002547 ORTHO05D002649 4.8e-08 60.5 51 51.0
FAN17G1768 Fragaria x ananassa HOM05D002547 ORTHO05D002649 4.8e-08 60.5 51 51.0
MBI10_g20268_MAGBIO Magnolia biondii HOM05D002547 ORTHO05D002649 4.8e-08 60.5 51 49.0
Medtr1g476030 Medicago truncatula HOM05D002547 ORTHO05D002649 4.8e-08 60.5 51 49.0
CiPaw.01G183700 Carya illinoinensis HOM05D002547 ORTHO05D002649 6.3e-08 60.1 51 47.1
COL.COLO4_15884 Corchorus olitorius HOM05D002547 ORTHO05D000256 6.3e-08 60.1 51 51.0
PSO210G4323 Papaver somniferum HOM05D002547 ORTHO05D002649 6.3e-08 60.1 51 49.0
Potri.010G070750 Populus trichocarpa HOM05D002547 ORTHO05D002649 6.3e-08 60.1 51 51.0
BcaB04g20456 Brassica carinata HOM05D002547 ORTHO05D002649 8.2e-08 59.7 53 49.1
CSS0001322 Camellia sinensis var. sinensis HOM05D002547 ORTHO05D002649 8.2e-08 59.7 51 49.0
Lj5g0007229 Lotus japonicus HOM05D002547 ORTHO05D002649 8.2e-08 59.7 51 51.0
Rhsim04G0180500 Rhododendron simsii HOM05D002547 ORTHO05D002649 8.2e-08 59.7 51 49.0
Dinv29853 Davidia involucrata HOM05D002547 ORTHO05D002649 1.1e-07 59.3 51 52.9
Hund03046 Selenicereus undatus HOM05D002547 ORTHO05D002649 1.1e-07 59.3 51 52.9
Ah.04g155710 Amaranthus hybridus HOM05D002547 ORTHO05D002649 1.4e-07 58.9 51 51.0
ATR0736G123 Amborella trichopoda HOM05D002547 ORTHO05D002649 1.4e-07 58.9 51 49.0
Lj6C635T4 Lonicera japonica HOM05D002547 ORTHO05D002649 1.4e-07 58.9 51 47.1
PSO832G1311 Papaver somniferum HOM05D002547 ORTHO05D002649 1.4e-07 58.9 51 47.1
TWI53G1948 Tripterygium wilfordii HOM05D002547 ORTHO05D002649 1.4e-07 58.9 51 45.1
AL3G37930 Arabidopsis lyrata HOM05D002547 ORTHO05D002649 1.8e-07 58.5 51 49.0
MELO3C006418.2 Cucumis melo HOM05D002547 ORTHO05D002649 1.8e-07 58.5 51 49.0
MD13G1214800 Malus domestica HOM05D002547 ORTHO05D002649 1.8e-07 58.5 51 45.1
THA.LOC104808626 Tarenaya hassleriana HOM05D002547 ORTHO05D002649 1.8e-07 58.5 51 49.0
MSTRG.4140 Avicennia marina HOM05D002547 ORTHO05D002649 2.4e-07 58.2 51 51.0
CANSAT78G1529 Cannabis sativa HOM05D002547 ORTHO05D002649 2.4e-07 58.2 51 52.9
AUR62002144 Chenopodium quinoa HOM05D002547 ORTHO05D002649 2.4e-07 58.2 51 51.0
HanXRQChr03g0091461 Helianthus annuus HOM05D002547 ORTHO05D002649 2.4e-07 58.2 51 51.0
Lj3C693G7 Lonicera japonica HOM05D002547 ORTHO05D002649 2.4e-07 58.2 51 49.0
MD16G1219900 Malus domestica HOM05D002547 ORTHO05D002649 2.4e-07 58.2 51 51.0
Rhsim01G0262700 Rhododendron simsii HOM05D002547 ORTHO05D002649 2.4e-07 58.2 51 52.9
SalBow3G2693 Salvia bowleyana HOM05D002547 ORTHO05D002649 2.4e-07 58.2 51 47.1
TPR.G1502 Trifolium pratense HOM05D002547 ORTHO05D002649 2.4e-07 58.2 51 49.0
EL10Ac3g04997 Beta vulgaris HOM05D002547 ORTHO05D002649 3.1e-07 57.8 51 49.0
BcaB04g20457 Brassica carinata HOM05D002547 ORTHO05D002649 3.1e-07 57.8 51 49.0
Haze_11390 Corylus avellana HOM05D002547 ORTHO05D002649 3.1e-07 57.8 51 47.1
Mapoly0139s0018 Marchantia polymorpha HOM05D002547 ORTHO05D002649 3.1e-07 57.8 52 50.0
PGSC0003DMG401010896 Solanum tuberosum HOM05D002547 ORTHO05D002649 3.1e-07 57.8 51 49.0
Aa31LG9G4840 Aethionema arabicum HOM05D002547 ORTHO05D002649 4.1e-07 57.4 51 52.9
AagrBONN_evm.TU.Sc2ySwM_368.3253 Anthoceros agrestis HOM05D002547 ORTHO05D002649 4.1e-07 57.4 46 54.3
A07p09210 Brassica napus HOM05D002547 ORTHO05D002649 4.1e-07 57.4 51 49.0
C07p14220 Brassica napus HOM05D002547 ORTHO05D002649 4.1e-07 57.4 51 49.0
BolC7t41916H Brassica oleracea HOM05D002547 ORTHO05D002649 4.1e-07 57.4 51 49.0
BraA07t28717Z Brassica rapa HOM05D002547 ORTHO05D002649 4.1e-07 57.4 51 49.0
ClCG05G004300 Citrullus lanatus HOM05D002547 ORTHO05D002649 4.1e-07 57.4 51 47.1
CsaV3_3G012040 Cucumis sativus L. HOM05D002547 ORTHO05D002649 4.1e-07 57.4 51 47.1
QL09p039271 Quercus lobata HOM05D002547 ORTHO05D002649 4.1e-07 57.4 51 51.0
Cfa002436 Carpinus fangiana HOM05D002547 ORTHO05D002649 5.3e-07 57.0 51 49.0
AUR62015562 Chenopodium quinoa HOM05D002547 ORTHO05D002649 5.3e-07 57.0 51 49.0
Glyma.20G209400 Glycine max HOM05D002547 ORTHO05D002649 5.3e-07 57.0 51 47.1
Sed0027434 Sechium edule HOM05D002547 ORTHO05D002649 5.3e-07 57.0 51 49.0
Oeu059152.2 Olea europaea HOM05D002547 ORTHO05D002649 6.9e-07 56.6 51 47.1
Psat6g116360 Pisum sativum HOM05D002547 ORTHO05D002649 6.9e-07 56.6 51 47.1
MSTRG.9887 Avicennia marina HOM05D002547 ORTHO05D002649 9.0e-07 56.2 51 47.1
CiPaw.03G265300 Carya illinoinensis HOM05D002547 ORTHO05D002649 9.0e-07 56.2 51 49.0
Glyma.10G181100 Glycine max HOM05D002547 ORTHO05D002649 9.0e-07 56.2 51 47.1
MBI07_g16924_MAGBIO Magnolia biondii HOM05D002547 ORTHO05D002649 9.0e-07 56.2 51 43.1
VMungo0720G2161 Vigna mungo HOM05D002547 ORTHO05D002649 9.0e-07 56.2 51 47.1
CiPaw.02G111500 Carya illinoinensis HOM05D002547 ORTHO05D002649 1.2e-06 55.8 51 49.0
HanXRQChr13g0421991 Helianthus annuus HOM05D002547 ORTHO05D002649 1.2e-06 55.8 51 51.0
Phvul.007G108300 Phaseolus vulgaris HOM05D002547 ORTHO05D002649 1.2e-06 55.8 51 47.1
QL09p039258 Quercus lobata HOM05D002547 ORTHO05D002649 1.2e-06 55.8 51 51.0
Lj2A1150T38 Lonicera japonica HOM05D002547 ORTHO05D002649 1.5e-06 55.5 51 47.1
Oeu011506.1 Olea europaea HOM05D002547 ORTHO05D002649 1.5e-06 55.5 51 43.1
Manes.13G034900 Manihot esculenta HOM05D002547 ORTHO05D002649 2.0e-06 55.1 51 45.1
SMO356G0496 Selaginella moellendorffii HOM05D002547 ORTHO05D002649 2.0e-06 55.1 52 50.0
PGR004G2720 Punica granatum HOM05D002547 ORTHO05D002649 2.6e-06 54.7 51 45.1
Sc13g0005750 Simmondsia chinensis HOM05D002547 ORTHO05D002649 2.6e-06 54.7 51 47.1
ECA240G2110 Erigeron canadensis HOM05D002547 ORTHO05D002649 3.4e-06 54.3 52 42.3
PSO675G0825 Papaver somniferum HOM05D002547 ORTHO05D002649 3.4e-06 54.3 51 45.1
PSO675G4716 Papaver somniferum HOM05D002547 ORTHO05D002649 3.4e-06 54.3 51 45.1
Pp3c24_10150 Physcomitrium patens HOM05D002547 ORTHO05D002649 3.4e-06 54.3 46 54.3
QL09p039216 Quercus lobata HOM05D002547 ORTHO05D002649 3.4e-06 54.3 51 47.1
COL.COLO4_03874 Corchorus olitorius HOM05D002547 ORTHO05D002649 4.5e-06 53.9 51 43.1
COL.COLO4_04034 Corchorus olitorius HOM05D002547 ORTHO05D002649 4.5e-06 53.9 51 43.1
DCAR_030746 Daucus carota HOM05D002547 ORTHO05D002649 4.5e-06 53.9 51 45.1
Duzib138G1857 Durio zibethinus HOM05D002547 ORTHO05D002649 4.5e-06 53.9 51 39.2
Gohir.A11G131300 Gossypium hirsutum HOM05D002547 ORTHO05D002649 4.5e-06 53.9 51 43.1
TWI09G0763 Tripterygium wilfordii HOM05D002547 ORTHO05D002649 4.5e-06 53.9 51 41.2
BcaB06g26468 Brassica carinata HOM05D002547 ORTHO05D002649 5.9e-06 53.5 51 47.1
CAN.G1492.3 Capsicum annuum HOM05D002547 ORTHO05D002649 5.9e-06 53.5 51 47.1
Cpa.g.sc44.48 Carica papaya HOM05D002547 ORTHO05D002649 5.9e-06 53.5 51 45.1
CDE08G0895 Ceratophyllum demersum HOM05D002547 ORTHO05D002649 7.7e-06 53.1 51 47.1
Nitab4.5_0000326g0080 Nicotiana tabacum HOM05D002547 ORTHO05D002649 7.7e-06 53.1 51 47.1
Pp3c13_4370 Physcomitrium patens HOM05D002547 ORTHO05D002649 7.7e-06 53.1 52 46.2
CARHR099250 Cardamine hirsuta HOM05D002547 ORTHO05D002649 1.0e-05 52.8 51 41.2
AUR62024689 Chenopodium quinoa HOM05D002547 ORTHO05D002649 1.0e-05 52.8 51 45.1
Gorai.007G146700 Gossypium raimondii HOM05D002547 ORTHO05D002649 1.0e-05 52.8 51 43.1
Nitab4.5_0001327g0060 Nicotiana tabacum HOM05D002547 ORTHO05D002649 1.0e-05 52.8 51 47.1
RcHm_v2.0_Chr4g0393331 Rosa chinensis HOM05D002547 ORTHO05D002649 1.0e-05 52.8 51 43.1


User provided reference genes

Program Settings