Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10026523m.g Eutrema salsugineum HOM05D007680 ORTHO05D009702 8.6e-70 266.9 140 100.0
Sp7g35810 Schrenkiella parvula HOM05D007680 ORTHO05D009702 8.1e-52 207.2 140 82.9
AT4G40045 Arabidopsis thaliana HOM05D007680 ORTHO05D009702 2.0e-50 202.6 143 81.1
CARHR246610 Cardamine hirsuta HOM05D007680 ORTHO05D009702 8.4e-49 197.2 141 78.7
A01p00970 Brassica napus HOM05D007680 ORTHO05D009702 1.7e-46 189.5 142 78.9
BraA01t00095Z Brassica rapa HOM05D007680 ORTHO05D009702 1.7e-46 189.5 142 78.9
Carub.0007s0203 Capsella rubella HOM05D007680 ORTHO05D009702 9.6e-45 183.7 141 74.5
AL7G12370 Arabidopsis lyrata HOM05D007680 ORTHO05D009702 7.1e-40 167.5 143 71.3
C01p01090 Brassica napus HOM05D007680 ORTHO05D009702 2.9e-33 145.6 140 65.0
THA.LOC104824894 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 3.8e-33 145.2 149 61.1
THA.LOC104824900 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 3.8e-33 145.2 149 61.1
BolC1t00107H Brassica oleracea HOM05D007680 ORTHO05D009702 4.9e-33 144.8 140 64.3
Duzib128G1419 Durio zibethinus HOM05D007680 ORTHO05D009702 3.0e-22 109.0 153 47.7
Thecc.10G109800 Theobroma cacao HOM05D007680 ORTHO05D009702 1.9e-21 106.3 149 50.3
Thecc.K0008600 Theobroma cacao HOM05D007680 ORTHO05D009702 1.9e-21 106.3 149 50.3
Gohir.A05G288200 Gossypium hirsutum HOM05D007680 ORTHO05D009702 1.6e-20 103.2 126 53.2
GSVIVG01034708001 Vitis vinifera HOM05D007680 ORTHO05D009702 4.8e-20 101.7 136 51.5
Ciclev10032885m.g Citrus clementina HOM05D007680 ORTHO05D009702 8.1e-20 100.9 80 71.2
TWI38G2267 Tripterygium wilfordii HOM05D007680 ORTHO05D009702 1.1e-19 100.5 72 76.4
COL.COLO4_33896 Corchorus olitorius HOM05D007680 ORTHO05D009702 3.1e-19 99.0 149 48.3
Gohir.D05G289400 Gossypium hirsutum HOM05D007680 ORTHO05D009702 3.1e-19 99.0 126 51.6
Gorai.009G304500 Gossypium raimondii HOM05D007680 ORTHO05D009702 1.2e-18 97.1 126 53.2
Cfa011226 Carpinus fangiana HOM05D007680 ORTHO05D009702 1.5e-18 96.7 171 45.6
Haze_02610 Corylus avellana HOM05D007680 ORTHO05D009702 2.0e-18 96.3 166 45.8
Hma1.2p1_0026F.1_g016760 Hydrangea macrophylla HOM05D007680 ORTHO05D009702 2.0e-18 96.3 147 46.9
Aqoxy2G01382 Aquilegia oxysepala HOM05D007680 ORTHO05D009702 2.6e-18 95.9 102 58.8
MBI17_g11658_MAGBIO Magnolia biondii HOM05D007680 ORTHO05D009702 2.6e-18 95.9 85 68.2
TAR636G0370 Trochodendron aralioides HOM05D007680 ORTHO05D009702 2.6e-18 95.9 66 78.8
Cpa.g.sc128.47 Carica papaya HOM05D007680 ORTHO05D009702 3.4e-18 95.5 145 46.9
arahy.Tifrunner.gnm1.ann1.VK4BH4 Arachis hypogaea HOM05D007680 ORTHO05D009702 7.6e-18 94.4 72 72.2
QL04p041248 Quercus lobata HOM05D007680 ORTHO05D009702 7.6e-18 94.4 65 75.4
Atru.chr12.970 Acer truncatum HOM05D007680 ORTHO05D009702 1.0e-17 94.0 77 68.8
Actinidia31090 Actinidia chinensis HOM05D007680 ORTHO05D009702 1.0e-17 94.0 74 74.3
Psat6g094320 Pisum sativum HOM05D007680 ORTHO05D009702 1.7e-17 93.2 66 75.8
PGR044G0006 Punica granatum HOM05D007680 ORTHO05D009702 1.7e-17 93.2 101 62.4
TAR636G2061 Trochodendron aralioides HOM05D007680 ORTHO05D009702 2.2e-17 92.8 66 77.3
CSS0013494 Camellia sinensis var. sinensis HOM05D007680 ORTHO05D009702 2.9e-17 92.4 83 67.5
TAR636G3254 Trochodendron aralioides HOM05D007680 ORTHO05D009702 2.9e-17 92.4 66 77.3
ATR0820G188 Amborella trichopoda HOM05D007680 ORTHO05D009702 3.8e-17 92.0 148 43.9
Migut.F01656 Erythranthe guttata HOM05D007680 ORTHO05D009702 4.9e-17 91.7 149 48.3
Potri.008G025700 Populus trichocarpa HOM05D007680 ORTHO05D009702 4.9e-17 91.7 66 80.3
CiPaw.14G028600 Carya illinoinensis HOM05D007680 ORTHO05D009702 6.5e-17 91.3 122 52.5
MELO3C012366.2 Cucumis melo HOM05D007680 ORTHO05D009702 1.4e-16 90.1 99 60.6
Potri.010G234900 Populus trichocarpa HOM05D007680 ORTHO05D009702 1.4e-16 90.1 67 76.1
vmacro10277 Vaccinium macrocarpon HOM05D007680 ORTHO05D009702 1.4e-16 90.1 114 54.4
Lalb_Chr01g0010321 Lupinus albus HOM05D007680 ORTHO05D009702 1.9e-16 89.7 66 72.7
Phvul.007G245300 Phaseolus vulgaris HOM05D007680 ORTHO05D009702 1.9e-16 89.7 148 41.2
CDE08G1572 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 2.5e-16 89.4 100 58.0
PSO384G1244 Papaver somniferum HOM05D007680 ORTHO05D009702 2.5e-16 89.4 111 51.4
TPR.G305 Trifolium pratense HOM05D007680 ORTHO05D009702 2.5e-16 89.4 66 74.2
TPR.G7612 Trifolium pratense HOM05D007680 ORTHO05D009702 2.5e-16 89.4 66 74.2
VMungo0720G1600 Vigna mungo HOM05D007680 ORTHO05D009702 2.5e-16 89.4 77 66.2
ClCG05G021580 Citrullus lanatus HOM05D007680 ORTHO05D009702 3.2e-16 89.0 111 54.1
CsaV3_5G035650 Cucumis sativus L. HOM05D007680 ORTHO05D009702 5.5e-16 88.2 99 59.6
RcHm_v2.0_Chr1g0333251 Rosa chinensis HOM05D007680 ORTHO05D009702 5.5e-16 88.2 74 68.9
Sed0005690 Sechium edule HOM05D007680 ORTHO05D009702 5.5e-16 88.2 99 58.6
CDE02G0611 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 7.1e-16 87.8 107 53.3
FAN03G2755 Fragaria x ananassa HOM05D007680 ORTHO05D009702 7.1e-16 87.8 114 54.4
HanXRQChr08g0217901 Helianthus annuus HOM05D007680 ORTHO05D009702 1.2e-15 87.0 127 47.2
Nn2g14013 Nelumbo nucifera HOM05D007680 ORTHO05D009702 1.2e-15 87.0 152 44.7
SalBow6G1777 Salvia bowleyana HOM05D007680 ORTHO05D009702 2.1e-15 86.3 123 49.6
PGSC0003DMG400027341 Solanum tuberosum HOM05D007680 ORTHO05D009702 2.1e-15 86.3 116 50.0
FAN06G0858 Fragaria x ananassa HOM05D007680 ORTHO05D009702 3.5e-15 85.5 114 52.6
Oeu060261.1 Olea europaea HOM05D007680 ORTHO05D009702 3.5e-15 85.5 147 44.9
Lj2C27T21 Lonicera japonica HOM05D007680 ORTHO05D009702 4.6e-15 85.1 67 74.6
Dinv30655 Davidia involucrata HOM05D007680 ORTHO05D009702 6.0e-15 84.7 100 52.0
Glyma.02G165700 Glycine max HOM05D007680 ORTHO05D009702 6.0e-15 84.7 64 71.9
Ah.10g034230 Amaranthus hybridus HOM05D007680 ORTHO05D009702 1.3e-14 83.6 114 50.9
EL10Ac2g03857 Beta vulgaris HOM05D007680 ORTHO05D009702 1.3e-14 83.6 98 55.1
Sopen11g003400 Solanum pennellii HOM05D007680 ORTHO05D009702 1.3e-14 83.6 117 48.7
Manes.05G202400 Manihot esculenta HOM05D007680 ORTHO05D009702 1.8e-14 83.2 142 45.1
Sc20g0001300 Simmondsia chinensis HOM05D007680 ORTHO05D009702 5.1e-14 81.6 69 69.6
MD07G1087200 Malus domestica HOM05D007680 ORTHO05D009702 8.7e-14 80.9 168 41.7
Medtr1g050700 Medicago truncatula HOM05D007680 ORTHO05D009702 1.1e-13 80.5 111 49.5
Lalb_Chr19g0129271 Lupinus albus HOM05D007680 ORTHO05D009702 2.5e-13 79.3 72 61.1
Prupe.2G086600 Prunus persica HOM05D007680 ORTHO05D009702 3.3e-13 79.0 116 49.1
SEGI_03872 Sequoiadendron giganteum HOM05D007680 ORTHO05D009702 7.4e-13 77.8 77 59.7
Lj6g0009049 Lotus japonicus HOM05D007680 ORTHO05D009702 6.3e-12 74.7 61 65.6
unitig_899.g15034 Utricularia gibba HOM05D007680 ORTHO05D009702 6.3e-12 74.7 97 55.7
Sabra10G0182100 Salix brachista HOM05D007680 ORTHO05D009702 3.1e-11 72.4 50 72.0
Zm00001eb411120 Zea mays HOM05D007680 ORTHO05D009702 2.6e-10 69.3 63 61.9
Lsat_1_v5_gn_2_102521 Lactuca sativa HOM05D007680 ORTHO05D009702 5.9e-10 68.2 101 45.5
Os12g0206700 Oryza sativa ssp. japonica HOM05D007680 ORTHO05D009702 7.6e-10 67.8 63 58.7
arahy.Tifrunner.gnm1.ann1.UIS3VC Arachis hypogaea HOM05D007680 ORTHO05D009702 3.8e-09 65.5 91 49.5
Hund17353 Selenicereus undatus HOM05D007680 ORTHO05D009702 8.5e-09 64.3 76 50.0
Zm00001eb004510 Zea mays HOM05D007680 ORTHO05D009702 5.5e-08 61.6 98 45.9
Glyma.10G104651 Glycine max HOM05D007680 ORTHO05D009702 7.2e-08 61.2 61 55.7
MD07G1069500 Malus domestica HOM05D007680 ORTHO05D009702 1.8e-06 56.6 121 38.8
AUR62043943 Chenopodium quinoa HOM05D000002 ORTHO05D000001 2.3e-06 56.2 45 62.2


User provided reference genes

Program Settings