Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 4.7e-85 317.8 156 100.0
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.8e-68 262.7 155 81.3
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 2.9e-66 255.4 157 79.6
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 2.1e-64 249.2 158 80.4
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 2.1e-64 249.2 158 80.4
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 4.6e-64 248.1 148 83.1
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 4.6e-64 248.1 148 83.1
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 4.6e-64 248.1 148 83.1
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 2.3e-63 245.7 158 79.7
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 3.0e-63 245.4 148 82.4
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 6.6e-63 244.2 148 81.8
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 1.4e-60 236.5 148 79.7
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 2.0e-59 232.6 152 77.6
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 8.4e-58 227.3 150 76.7
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.9e-57 226.1 150 78.0
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 3.2e-57 225.3 150 75.3
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 9.3e-57 223.8 147 76.2
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 7.9e-56 220.7 139 78.4
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 1.6e-45 186.4 158 60.8
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 2.8e-45 185.7 149 63.1
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 1.4e-44 183.3 158 60.1
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 3.1e-44 182.2 158 59.5
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 1.2e-43 180.3 153 58.2
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 7.6e-43 177.6 147 61.2
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 7.6e-43 177.6 154 59.1
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 3.8e-42 175.3 147 58.5
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 3.8e-42 175.3 143 60.8
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 4.9e-42 174.9 151 58.3
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 6.5e-42 174.5 151 61.6
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 6.5e-42 174.5 161 57.1
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 8.4e-42 174.1 143 60.1
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 8.4e-42 174.1 156 56.4
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 8.4e-42 174.1 154 57.8
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.1e-41 173.7 156 56.4
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 1.4e-41 173.3 157 59.2
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 1.4e-41 173.3 155 56.8
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 1.9e-41 172.9 131 65.6
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 4.2e-41 171.8 155 56.8
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 4.2e-41 171.8 129 63.6
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 1.2e-40 170.2 127 64.6
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 2.1e-40 169.5 132 64.4
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 2.7e-40 169.1 154 57.1
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 3.5e-40 168.7 158 55.1
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 3.5e-40 168.7 158 55.1
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 7.9e-40 167.5 161 54.7
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 1.0e-39 167.2 128 64.1
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 1.0e-39 167.2 155 57.4
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 1.0e-39 167.2 155 57.4
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 1.8e-39 166.4 148 56.8
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 3.9e-39 165.2 162 54.9
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 5.1e-39 164.9 131 61.8
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 3.3e-38 162.2 129 62.0
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 7.4e-38 161.0 142 55.6
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 6.9e-36 154.5 126 58.7
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 4.5e-35 151.8 149 54.4
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 1.8e-28 129.8 90 65.6
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 1.5e-27 126.7 143 46.2
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 5.9e-27 124.8 136 45.6
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 2.9e-26 122.5 150 44.7
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 8.5e-26 120.9 140 42.1
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 8.5e-26 120.9 132 44.7
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 4.2e-25 118.6 134 45.5
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 4.2e-25 118.6 141 41.8
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 9.4e-25 117.5 139 42.4
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 2.1e-24 116.3 133 45.9
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 2.1e-24 116.3 141 40.4
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 3.6e-24 115.5 81 66.7
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 3.6e-24 115.5 133 44.4
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 3.6e-24 115.5 133 44.4
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 4.7e-24 115.2 132 43.9
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 1.0e-23 114.0 161 37.9
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 1.4e-23 113.6 139 43.9
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 1.8e-23 113.2 133 44.4
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.8e-23 113.2 167 40.1
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 2.3e-23 112.8 137 41.6
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 2.3e-23 112.8 132 42.4
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 5.1e-23 111.7 172 36.0
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 6.7e-23 111.3 171 38.0
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 6.7e-23 111.3 172 37.8
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 1.1e-22 110.5 133 42.1
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 1.5e-22 110.2 132 45.5
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 1.5e-22 110.2 137 41.6
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 1.5e-22 110.2 140 42.1
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.5e-22 110.2 137 39.4
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.5e-22 110.2 137 39.4
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 2.0e-22 109.8 160 38.1
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 2.0e-22 109.8 130 42.3
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 2.6e-22 109.4 136 41.2
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 3.3e-22 109.0 131 44.3
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 3.3e-22 109.0 161 38.5
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 3.3e-22 109.0 132 41.7
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 3.3e-22 109.0 128 42.2
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 4.4e-22 108.6 136 41.2
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 4.4e-22 108.6 131 43.5
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 5.7e-22 108.2 124 48.4
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 5.7e-22 108.2 138 42.8
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 5.7e-22 108.2 159 34.6
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 7.4e-22 107.8 165 38.2
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 7.4e-22 107.8 140 39.3
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 7.4e-22 107.8 166 39.8
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 7.4e-22 107.8 131 43.5
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 7.4e-22 107.8 135 45.2
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 9.7e-22 107.5 162 39.5
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 9.7e-22 107.5 140 43.6
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 9.7e-22 107.5 135 45.2
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 1.3e-21 107.1 158 38.0
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 1.3e-21 107.1 168 38.7
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 1.7e-21 106.7 137 40.9
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 1.7e-21 106.7 150 37.3
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 2.2e-21 106.3 124 43.5
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 2.2e-21 106.3 136 41.9
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 3.7e-21 105.5 138 42.0
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 3.7e-21 105.5 146 41.8
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 3.7e-21 105.5 129 41.9
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 6.3e-21 104.8 129 39.5
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 8.2e-21 104.4 136 40.4
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 1.1e-20 104.0 128 40.6
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 1.1e-20 104.0 126 43.7
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 1.1e-20 104.0 155 36.1
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.4e-20 103.6 128 43.8
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 1.8e-20 103.2 173 34.1
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 2.4e-20 102.8 133 41.4
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 3.1e-20 102.4 144 40.3
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 4.1e-20 102.1 149 35.6
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 7.0e-20 101.3 168 35.7
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 7.0e-20 101.3 136 39.0
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 7.0e-20 101.3 141 40.4
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 7.0e-20 101.3 124 42.7
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 7.0e-20 101.3 158 36.7
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 7.0e-20 101.3 146 35.6
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 9.1e-20 100.9 140 40.0
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 1.2e-19 100.5 133 38.3
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 1.2e-19 100.5 129 41.1
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 1.5e-19 100.1 143 40.6
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 1.5e-19 100.1 139 39.6
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 2.6e-19 99.4 158 36.1
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 3.5e-19 99.0 130 41.5
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 4.5e-19 98.6 163 34.4
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 4.5e-19 98.6 130 41.5
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 5.9e-19 98.2 136 38.2
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 7.7e-19 97.8 185 35.7
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 1.0e-18 97.4 140 36.4
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 1.3e-18 97.1 129 39.5
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 1.3e-18 97.1 135 38.5
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 1.3e-18 97.1 144 37.5
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 1.7e-18 96.7 136 41.2
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 1.7e-18 96.7 136 41.2
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 1.7e-18 96.7 138 40.6
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 2.2e-18 96.3 139 40.3
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 2.2e-18 96.3 140 36.4
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 2.9e-18 95.9 136 39.7
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 3.8e-18 95.5 92 46.7
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 6.5e-18 94.7 142 35.2
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 6.5e-18 94.7 133 39.8
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 1.1e-17 94.0 133 39.8
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 1.1e-17 94.0 139 38.8
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 1.4e-17 93.6 136 40.4
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 1.9e-17 93.2 130 37.7
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 2.5e-17 92.8 132 37.1
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 2.5e-17 92.8 123 41.5
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 3.2e-17 92.4 136 38.2
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 3.2e-17 92.4 146 34.9
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 3.2e-17 92.4 127 38.6
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 4.2e-17 92.0 136 36.0
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 1.6e-16 90.1 150 38.7
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 2.1e-16 89.7 149 37.6
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 2.7e-16 89.4 149 37.6
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 6.1e-16 88.2 131 34.4
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 3.9e-15 85.5 130 38.5
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 3.9e-15 85.5 136 37.5
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 6.7e-15 84.7 92 44.6
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 1.3e-13 80.5 154 29.2
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 2.2e-13 79.7 128 34.4
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 2.8e-13 79.3 87 42.5
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 3.7e-13 79.0 150 38.0
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 3.7e-13 79.0 140 34.3
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 2.2e-10 69.7 152 32.2
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 5.0e-10 68.6 92 35.9
BcaC03g16979 Brassica carinata HOM05D003761 ORTHO05D039658 1.0e-07 60.8 65 44.6
C02p48790 Brassica napus HOM05D003761 ORTHO05D039658 2.3e-07 59.7 63 44.4


User provided reference genes

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